RNA id: XM_021581700.2


Basic Information

Item Value
RNA id XM_021581700.2
length 921
RNA type mRNA
GC content 0.36
exon number 1
gene id LOC110503334
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 13895285 ~ 13896205 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGAAAACTCTACTCACTTTAAGGTGTTTAGGCTTGCTGCATACGGTGATATCGGACAAATGAAGTATTTCTACTTTGCTGTAGtaactgttttatattttgtcaTCATTCTTGCCAATGCTTTACTTATTGGAGTTATCTGCATTGAAAGAAGCCTTCATGAACCCATGTATCTGTTTCTATGTGCTTTGTTTGTTAATCAGTTGTATGGGAGCACTGGTTTGTTTCCTGCTCTCATGTTTTACTTGCTGTCTGACACACATGATATTTCCCTTCTTTATTGTTATCTCCAGATTTATGTGTTGTACACATATGCTATAACAGAATTTAATAATTTATCAGTTATGTCATATGACAGGTACATTTGTATTTGTTATCCTCTACAGTATAACAATATTATGACACCTAAAATAGTTTTTGGCTTAATTCTGCTGTCCTGGTTGTATTCTTTTTCCCTCAATGCCATCGTTATCTCCCTGAGTTTGCGACTGCAATTTTGTGGTAACGTTCTAGACAGACTGTATTGTGACAACTACTCAGTCGTCAAGCTTGCCTGTTCAAATACTATGCTGAATAACATATGGGGTCTTGTTGGCACTGTGCTTTCAATTTCTTGTACTATATGTCCTACCATATACTCATATGTAAAAATTCTACAAATTTGTTTAAAGTCTTCTAAAGAGACAAAACAGAAAGCATTTAACACCTGTATGCCACATATAGCCTCTTTGCTGAACTTCTCCTCTGGCTGCTTATTTGTGATTCTGCAAGGCAGATATGATACTGCACATCTTCCACCTATACTTCGCtctattttatttgtttattttctaaTATGTCCACCACTTTTCAATCCTATTATGTATGGCATTAGGATGGTTAATATCAGGCAGGCTTGTAAAAAGGTATTGAGGCTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2178216 lncRNA downstream 23267 13871593 ~ 13872018 (-) True G1904486
TU2178152 lncRNA downstream 109088 13781341 ~ 13786197 (-) True G1904423
TU2178123 lncRNA downstream 153766 13741198 ~ 13741519 (-) True G1904398
TU2178120 lncRNA downstream 154731 13734759 ~ 13740554 (-) True G1904396
TU2178117 lncRNA downstream 165020 13730028 ~ 13730265 (-) True G1904393
TU2178598 lncRNA upstream 115953 14012158 ~ 14012456 (-) True G1904829
TU2178606 lncRNA upstream 132566 14028771 ~ 14029064 (-) True G1904836
TU2178608 lncRNA upstream 134763 14030968 ~ 14031172 (-) True G1904838
TU2178611 lncRNA upstream 136953 14033158 ~ 14033476 (-) True G1904841
TU2178622 lncRNA upstream 152238 14048443 ~ 14048751 (-) True G1904852
XM_021581699.2 mRNA downstream 6846 13887519 ~ 13888439 (-) True LOC110503333
XM_021581696.2 mRNA downstream 82692 13811652 ~ 13812593 (-) True LOC110503330
NM_001160674.1 mRNA downstream 175838 13717967 ~ 13719447 (-) False rabx5
XM_036961191.1 mRNA downstream 188143 13702362 ~ 13707142 (-) True LOC110503800
XM_021582337.2 mRNA downstream 188144 13702362 ~ 13707141 (-) False LOC110503800
XM_036961074.1 mRNA upstream 6834 13903039 ~ 13903959 (-) True LOC118943997
XM_021581701.2 mRNA upstream 17152 13913357 ~ 13914277 (-) True LOC110503335
XM_021581702.2 mRNA upstream 29766 13925971 ~ 13926900 (-) True LOC110503336
XM_021581703.2 mRNA upstream 41641 13937846 ~ 13938796 (-) True LOC110503337
XM_036961075.1 mRNA upstream 44110 13940315 ~ 13949671 (-) True LOC110503338
TU2178133 other downstream 136641 13757828 ~ 13758644 (-) True G1904408
TU2178084 other downstream 175834 13716650 ~ 13719451 (-) True rabx5
TU2177124 other downstream 1171288 12717450 ~ 12723997 (-) False LOC110503775
TU2177125 other downstream 1176506 12717450 ~ 12718779 (-) True LOC110503775
TU2176356 other downstream 1914823 11979811 ~ 11980462 (-) True LOC110503324
TU2178616 other upstream 146765 14042970 ~ 14043449 (-) True G1904846
TU2178650 other upstream 193517 14089722 ~ 14142728 (-) True G1904877
TU2178696 other upstream 283858 14180063 ~ 14214520 (-) True G1904919
TU2179185 other upstream 723458 14619663 ~ 14621372 (-) False G1905348
TU2179186 other upstream 723458 14619663 ~ 14621372 (-) True G1905348