RNA id: XM_021582343.2


Basic Information

Item Value
RNA id XM_021582343.2
length 1464
RNA type mRNA
GC content 0.44
exon number 4
gene id aamdc
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 14015443 ~ 14019214 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagtagatgtcctgactgatttgccaaaactatagttaacaatacatttgtggagtggttgaaaaatgagttttaatgactcaagctaagtgtaagtaaacttctgacttcaactgtatattcactTTTATTACTCTAAATACACGTGGAACTGCATGAAAATCATGCATGTCACACATTGGCCCCATTTATTAATTGAAAGACCCAGAACTGTTATTTTTACATGTGGTGCATGCAGAATTGAGAAGTCATTTTTTAGTCCAGAAATATACTTTCTGGGCCCGGAAGCCAGCTTGTGATGCATGTTTTTGTGGATAaacagaaaatatatatatatatttttattatcaAATACGTTTGCAGCATCATTGTTTCCCCTTTCGACAGTGTACACATTGGCTGACATTAGTGACGTAACAGGAGGAATGGGAACCTAAAGGCAGTCTAATAGCCGTTTGGGGGAACGGGAGTGACTCACACACAACTTAAAAGTACACgtagaaatacatttttaaaaataaagtaaatgGTTATTGGATGAACTCGGTGGGACAAACAGCCATTGCTTCAAACGTTCAGTTACAATTCACCTTAACCAGTCCACATTTTGTCATCGCCACGTTCAGCAGGAGAGACAACGTTCTTACGTTCATATAGAAATGTATGATATAGAACCAATATACTTCTCTGGTATGTAGAGTAAGTAATCACATCAGCTAATTGAATATCTATCCGCAACGTTCCACAACGCTGAGGTATCAGCTACTTAACCTAACGATCCGGAACACACCCCTTTACGAAAGTAGCACAGGCTGCCTACGAGGCAACGAACTGCAGCCGAGACACAACATCTGACCTATGTCGTCGCCAGAGATCGCTTCCCTGTCCTGGGGACACATGAAGGTGAAGGGCTGCTCCTCTTCCTATAAGGACTGTAAGGTGTGGCCCGGGGGTAGCCGCGCAtgggactggagagagactgggacggatCATCACCCTGGAGTGCAGCCTGCAGATCTGGAGGAGGTGCTTCAGAAGGGTGTGGCGACTCTGGTCATCGGGCGGGGCATGAATGAGGCGCTGCAGGTCCCGTCCTCAACTGTGGACTTcgtgagacagagaggagtggagCTGATAGTTCTGCAGACAGAGAAGGCCATCACAGAATACAACAACCTGGTTGGCCAGGGAGCCAAGGTGGGTGGCATCTTCCACTCTACCTGCTGATGACATCATACTACAGGTGGCCAGTAGGAGAACTCTGAAAGCCTGGTGCGATTCAACATGTCATATTCATTACAGCACAtcatagcaaaatgttttgcaatggacAAGTCcatgtagtccctccctgtttggtgCCTGATGAACACAAACCTGGGGTGCATTAGCGAAGTGAAACATTCAGAACACCGTAATGAAGAGCTAAAATGACTTGCTGTGAATAAAGGCTTGTTTTTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2178598 lncRNA downstream 2987 14012158 ~ 14012456 (-) True G1904829
TU2178216 lncRNA downstream 143425 13871593 ~ 13872018 (-) True G1904486
TU2178152 lncRNA downstream 229246 13781341 ~ 13786197 (-) True G1904423
TU2178123 lncRNA downstream 273924 13741198 ~ 13741519 (-) True G1904398
TU2178120 lncRNA downstream 274889 13734759 ~ 13740554 (-) True G1904396
TU2178606 lncRNA upstream 9557 14028771 ~ 14029064 (-) True G1904836
TU2178608 lncRNA upstream 11754 14030968 ~ 14031172 (-) True G1904838
TU2178611 lncRNA upstream 13944 14033158 ~ 14033476 (-) True G1904841
TU2178622 lncRNA upstream 29229 14048443 ~ 14048751 (-) True G1904852
TU2178640 lncRNA upstream 52577 14071791 ~ 14074378 (-) True LOC110503343
XM_021582341.2 mRNA downstream 13714 13996252 ~ 14001729 (-) True rps3
XR_005039443.1 mRNA downstream 15766 13999529 ~ 13999677 (-) True LOC118944122
XR_005039441.1 mRNA downstream 16503 13998794 ~ 13998940 (-) True LOC118944120
XR_005039442.1 mRNA downstream 17248 13998047 ~ 13998195 (-) True LOC118944121
XR_005039444.1 mRNA downstream 18697 13996600 ~ 13996746 (-) True LOC118944123
XM_021582344.2 mRNA upstream 2766 14021980 ~ 14026047 (-) True LOC110503806
XM_036961699.1 mRNA upstream 52572 14071786 ~ 14401583 (-) False LOC110503343
XM_036961700.1 mRNA upstream 52572 14071786 ~ 14401583 (-) False LOC110503343
XM_036961701.1 mRNA upstream 52572 14071786 ~ 14401583 (-) False LOC110503343
XM_036961698.1 mRNA upstream 52572 14071786 ~ 14401799 (-) False LOC110503343
TU2178133 other downstream 256799 13757828 ~ 13758644 (-) True G1904408
TU2178084 other downstream 295992 13716650 ~ 13719451 (-) True rabx5
TU2177124 other downstream 1291446 12717450 ~ 12723997 (-) False LOC110503775
TU2177125 other downstream 1296664 12717450 ~ 12718779 (-) True LOC110503775
TU2176356 other downstream 2034981 11979811 ~ 11980462 (-) True LOC110503324
TU2178616 other upstream 23756 14042970 ~ 14043449 (-) True G1904846
TU2178650 other upstream 70508 14089722 ~ 14142728 (-) True G1904877
TU2178696 other upstream 160849 14180063 ~ 14214520 (-) True G1904919
TU2179185 other upstream 600449 14619663 ~ 14621372 (-) False G1905348
TU2179186 other upstream 600449 14619663 ~ 14621372 (-) True G1905348

Expression Profile