RNA id: XM_021582344.2


Basic Information

Item Value
RNA id XM_021582344.2
length 2600
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC110503806
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 14021980 ~ 14026047 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacttcaactgtacattatttgtcttgcctattcactaTTTGAATGGCACTGTCTCTTTCCTATCACCTACTTTGactgaagtagatttaacaagtgacatcaataagggatcatagctttcacatggtcagtctatgttatggaaagagcatgttttgtaTTCTCAGGACCCCTCACGCTCTCTCCCTCAGGCCTCAGGTAATAGCACAGCTCTCGTCAGACACAACAACATGTACAGTAGCTACAGTGCATGCAGAGAGGATGGAACAGTTTATTACGTTTAAGTCAGTGCAACTGCAGTGTCCTGTTGACTTTTGCGAGTGATTCAGGTGACACAGTGAAAGACAtttgggaaaaaaggaaataATAAAGAAAGCAAGGGAGTACACTATAAACTCCAAGGCATTTTTTTACAAAAACACCTGTAGTAACTTCAACTCAAAGTCAATGAAAAGTCATTATTACTTAAAATGTTTATGGTATGGACTCAAAACTAAATGAGAAGTCCCACCaactacatttaaaaaacatgaaATATTAACTTTTTTTCCAACACGCTCTACTGCAggttgattaaaaaaataaataagaccACAATAGAGTAAATTACCGAATTCAACAAGTATATCTCaatcactaacaaatacagtcatgggtggtaaacTTTACAATTCAATCCAAAaggcaaggcacactgggaaGTTATTGGGGCGGGGCTAAGCGTAACATTTAAGTATACCTTATTTCCGGAATCCTTGGGACGTCTTATATACACAATCTACGCGACGGCCCTACCCCCTCCCAGAAAGGATATACAACTCTCGCATTTAAATTGGTTCACAGCAATTGCTTTGTTGTGCACCACCAAATATTTTACAGCACAGGTAGCTAATTTCAACCAGAAAGTGTATTTTGCTAGGTCAATTCACAGCATGGCTTGATTTGTTGTTGGGCCAAGCGTACAGTACACGTGCCACACTCATTACATTAATTTTACCCGTGGCTTAGCTAGCTGTTGTCAACATTTCAATTGTGAGTCTTTCAGTTTCAACTGCAGTGTTGTCATTTCGAGCTCGCGAGGCACGAGGGTAAACTAGTTTAGAAAAGTAACAGTGGGTCGATCTCTGCTGAGTAGACAACAGAGCCAGAGATGGCTATCGCCCACGTCGCTACAGAGTATGTGTTCAGCGATTTCCTCCTGAAGGAGCCGGGTCAGGCAAGGTACCGCGCCGTGCGCACTGAGCTAGCCATGGACAAGATGGTGACGTGCGTGGCGGTGggactccctctcctccttatctCTCTAGCCTTCGCCCAGGAGGTCTCTGTGGGTGTTCAGATCAGCTGTTTCCCTCCAGCTAACTTTTCCTGGCGTCAGGCCATGTATGTAGACTCCTACTGCTGGGcagccctacacactcacacactacccTTATGGCTacacaagTTCTTCCCCTATATCCTGCTGCTGGTAGCAGTAATTATGTATAGTCCAGCGGTGTTCTGGCgtttctctgcctctcctctgcttCAGTCAGACCTTAGCTTCATCATAGAAGAGCTCGACCGCTGCTACAACCGTGCTGTCACTCTGGCTAAACGCATGGCCACTGCTGGggaacacacagacagtggtgcGTCCGACCCTACTGAGGGCTGTTTCATGTACCCGGTGGTGGAGCAGTATCTGCTGACCAAGAGGAGGAGTGTCGTGGTGTTGTGGCGCTACCTGCTGTGTCGAGGCCTCAACCTGCTCACCTTGCTTCTGGCCTGTGTCTACCTGGGCTACTACCTCCGCCTCGcctccctcactgaccagTTCGGCTGTTCCCTGCGCACCGGACTCCTGGCCAATGACACCTCAATCCCCGACCAATTACAGTGCAAGCTGGTCGCCGTGGGAGTATTCACTTTGCTAAGCTTTGTTAACCTGCTGGTGTACGCCATGCTGGTTCCCGTGGTGATATACTCCGCTCTGCGCCCCTTCTTTCAATCACACACCCATTTCCTGAAGTCCTACCAATCACTGCCCACCATCAGTGTTCTGCCCCTCCCGCAGGGCCAATGGGATGACCTGACGCTCTACTTCCTCTTCCTGGAAGAAAACCTCAGCGAGCTCAAGTCCTACAAGTACATGAAGGTGTTGGAGTtgttgaggaggaggggggtgtgTGAGGGGGAGGACTTTGACGCCATGGAACTGCTTCAGATGCTATGTCTGGTGAAGACTGATGTTACGGACGGAAAGAGGAGCACCGCAGCTACCTTCAATGCTAGTGACAAAACGACCAATACAAATGCTAGCCTTGATGCTAAAGCTAATGATAACCCTATTGCTAAAGTTAGCCATATTGCTAATGCTAACCCTGCTGCTGGGGAGGCTAGTAGCAAGGCCCCAACCCCCAGCCCAGCTTCCCCAGACTCATGCCAAAGCCAGACCAGTGCCACTGAAATGACAGAATTCTCTGCTTTGTTGCCAGGCAACAGTGCAATGACAGGCGGAAAGCGGAGTGACGAGGGGGCGGTCCGACAGCGAATTATCTGATCGTTGCCATGAAGGAACAGCCCCAATGGGTTGTGGGACACTAGAAACCAGAGG

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0044425 obsolete membrane part cellular_component
GO:0005886 plasma membrane cellular_component
GO:0022829 wide pore channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2178598 lncRNA downstream 9524 14012158 ~ 14012456 (-) True G1904829
TU2178216 lncRNA downstream 149962 13871593 ~ 13872018 (-) True G1904486
TU2178152 lncRNA downstream 235783 13781341 ~ 13786197 (-) True G1904423
TU2178123 lncRNA downstream 280461 13741198 ~ 13741519 (-) True G1904398
TU2178120 lncRNA downstream 281426 13734759 ~ 13740554 (-) True G1904396
TU2178606 lncRNA upstream 2724 14028771 ~ 14029064 (-) True G1904836
TU2178608 lncRNA upstream 4921 14030968 ~ 14031172 (-) True G1904838
TU2178611 lncRNA upstream 7111 14033158 ~ 14033476 (-) True G1904841
TU2178622 lncRNA upstream 22396 14048443 ~ 14048751 (-) True G1904852
TU2178640 lncRNA upstream 45744 14071791 ~ 14074378 (-) True LOC110503343
XM_021582342.2 mRNA downstream 2766 14015443 ~ 14019214 (-) False aamdc
XM_021582343.2 mRNA downstream 2766 14015443 ~ 14019214 (-) True aamdc
XM_021582341.2 mRNA downstream 20251 13996252 ~ 14001729 (-) True rps3
XR_005039443.1 mRNA downstream 22303 13999529 ~ 13999677 (-) True LOC118944122
XR_005039441.1 mRNA downstream 23040 13998794 ~ 13998940 (-) True LOC118944120
XM_036961699.1 mRNA upstream 45739 14071786 ~ 14401583 (-) False LOC110503343
XM_036961700.1 mRNA upstream 45739 14071786 ~ 14401583 (-) False LOC110503343
XM_036961701.1 mRNA upstream 45739 14071786 ~ 14401583 (-) False LOC110503343
XM_036961698.1 mRNA upstream 45739 14071786 ~ 14401799 (-) False LOC110503343
XM_036961702.1 mRNA upstream 45739 14071786 ~ 14401799 (-) False LOC110503343
TU2178133 other downstream 263336 13757828 ~ 13758644 (-) True G1904408
TU2178084 other downstream 302529 13716650 ~ 13719451 (-) True rabx5
TU2177124 other downstream 1297983 12717450 ~ 12723997 (-) False LOC110503775
TU2177125 other downstream 1303201 12717450 ~ 12718779 (-) True LOC110503775
TU2176356 other downstream 2041518 11979811 ~ 11980462 (-) True LOC110503324
TU2178616 other upstream 16923 14042970 ~ 14043449 (-) True G1904846
TU2178650 other upstream 63675 14089722 ~ 14142728 (-) True G1904877
TU2178696 other upstream 154016 14180063 ~ 14214520 (-) True G1904919
TU2179185 other upstream 593616 14619663 ~ 14621372 (-) False G1905348
TU2179186 other upstream 593616 14619663 ~ 14621372 (-) True G1905348

Expression Profile