RNA id: XM_036961222.1


Basic Information

Item Value
RNA id XM_036961222.1
length 5889
RNA type mRNA
GC content 0.52
exon number 13
gene id LOC110503811
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 14404761 ~ 14519627 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTGGCCACATGGCGGTTTGAGggtagatggaaagagagagagagggagagagagagaaggagaaaaggagaTGGGAGTGAGAAACAGGGATGTTTGGATGTGAAAGGGATCCGTAGAGATCAGTATCGCTCAGCAGCAGGTCGTGGTACTAGGGAGCTGGAATCTAACGTTACTTACTGCTGTGTGGGAAGAGGAGAACTAATACATCTGTAGAACCACATCATGACTGTATGATGAGGATAACCAAACTCGAGGCGAAGGAGGCGTGTGATTGGCTACGAGCGGCAGGATTCCCCCAATATGCTCAGCTCTTTGAAGACTCTCAGTTCCCCATCGACATCTCTCCTGTGAAGAAAGACCATGACTTTCTGGACAACGACCTGGTGGAACCTCTGTGCAGACGACTCAACACCTTGAACAAGTGTGCCTCTATGAAACTCGATGTCAACCTTCCTAAGAAAAAGAGTGAAGACTCTGATGAGGAGGACCTGCTTGCCATCAGTGACAGATGGACGTTTGAGTGGACGAGCCGCCGCTGGTCCAGACTAAAGGGGGAGGGGCGGAGTCCCAGGGAGGGGGAGGGCCGGGGCCTGCGGAACACTACCAGTAGCGAGAGTGTTCTAACTGACCTCAGCGAACCAGAGGTCTCATCTCTCCACAGTGAGAGCAGCGGGGGGAGTGGCCACCAGGCTGTGAGCACAGAGGACTCAGACTGCTCTAACCGGAACTACTCTGACTCTGCAGCCATGCCTGAACCTGACTCCAACTCCCTTACCCTGCCACACCTCCCTAAGCACCTCCCCTATTACGGCTCGTTGCCCACCAAAAACAACCGCGACGGACGGACCCGAGCCAAGGACTTCCTGCGCCACATGGAGACGCTACGTTCCCGAGGCACGTTGGATAGGGGGAGGAGCAAGATGCTGGTTATCAGCGCTCCGGTACTGCAGATGGAGCCGCAGGCCCTGAAGACGATGCGCTGTGTGGAGATCACCAATGGGGACGGGTCGAGGGCGGAGGAACCCACTGGGGGACCAATCCTAGGGCTAACCCCCCAGTGCCCCTCCAGTAGCGAGGGCAGCCACTCCAGCGGCAGCACCGTCTCCTCCCCCAGTCTGAAGGAGAGGAAGCCCCACTCCCAGCGGACGGACCGGTCTGACGCCAAGCGCAGTGGCATGTATCTGGAGGACTTGGCCGTGTTCTCCAGCCTGCAGCGGATCAGTGGCGTGGCCGAACACAACCGGCATAACGAGTTCCGCTCCTACGAGGACCTGGTGGTCCACATACCCAAAGACCACAAGCCTGGCACCTTTCCCAAGGCCCTGTCCATAGAGAGCCTCTCCCCCACCCTGGGGGCCTCCGTCCCCTGGCACAGCGGCAGCCTCAATCCCCTGGAGCCCCAGTCCAACCCCAACCCCCGACCTAACTCTAACCCCAGGGAGTTCCACCCCCGCCCGGCCACCCAGTTCTGCCCACGGGGCAGTAGGATGAGTGTGTACGACAACGTCCCTGGGTCTCACCTCTATGCCTCTACTGGAGACCTGCTGGACCTGGAGAAGGAAGACCTGTTCCCCCACCTGGATGACATCTTGCAGCACGTCAACGGCCTGCAGCAGATAGTGGACCGCTGGTCCAAGAAAATGCTGCCCTCTGCAGGCCTGGACATACAGGGGACCCAGCCTGCAGGTATGCAGTCTTCCAGCCAGATCACGCTGGACTTTGAGGGAACGTCTGTTCTGGAGGGACAGAGCACAGCCagtgacagggacagagaccgtGTGTCCCTCATTGAGACTCACTGtacaggacacagagagaggagggactcaGGAGTGGGAGCATCGCTAACCAGACCCAACCGTCTGCGATGGCCCAGCTTCCAGATGTCCAACCGGCTCAGCCACTCAGTGGCCTCGCTCCAGATCACCAACCAATCAGCAGGCCAGCTCAGCCTGCTGCAGAAGTTCTCTCTCCTCCGCCTCACTGCCATCATGGAGAAATACTCCATGTCCAACAAACACGGATGGACCTGGTCAGTTCCAAAGTTCATGAAGAGGATGAAGGTTCCAGACTACAAGGACAAGAACGTCTTTGGTGTTCCTCTGATTGTTCACGTCCAGCGCTCTGGTCAGCCCCTCCCCCTCAGCCTGCAGCAGGCCCTTCGATACCTCAGGAGCCAGTGTCTAGAccagGTGGGTCTGTTCCGTAAGTCTGGTGTGAAGTCTCGTATCCAGGCGCTGAGGCAGATGAATGAGTCGTCTCCGGATGATGTCAGCTACGAGGACCAGTCAGCGTACGACGTAGCAGACATGGTTAAACAGTTCTTCAGAGACCTGCCTGAACCTCTACTGACCAGCAAGCTGGGAGAGACCTTCCTACACATCTACCAGTatgTTCCTAAGGACCAGCGGTTGCAGGCTGTGCAGGCGGCCATCATGCTGATGTCAGACGAGAACAGGGAGGTGCTTCAGATGTTGCTCTGCTTCCTGTCTGACGTCACTTCCTCTGTGGAGGAGAACCAGATGACTCCCATGAACATCGCTGTGTGTTTGGCCCCGTCCCTGTTCCACCTCAACATCCTGAAGAAGGACAACCTCTCACCCAGGGCCATGCAGAGGAAGTACACGACAGGCCGGCCCGACCAGAAGGACCTGAATGAGAACCTTTCCGCGACGCAGGGACTCGCCCACATGATCATAGAGTGCAACCGACTGTTTGAGATTCCTCACGAGATGGTGACTCAGTCCAGGAACTCGTACGCGGAGGCGGACCTTCACGCTCCCACCTTAGAGGAGCTCTGTAGACAGCAGGAGGAGGACGATGCGTCCTACCAGACAGAGGCCAGACCCTGCCAGACACACTCAGAGACCAGACCGCAGAACCTCTACCAGAGCTACGTAGAGAGCAGGCTGCAGGAGCTCCTGAAGGAGGCCAGAGAGAAGGCTAAGGGCTGGGTGTCCTGCACCAGCTCAGACAACACTGAGCTCTACTGTAAGAAGGTTGGTGATGGGAACTCTTTGCGGCGGTGGCGTGTGGCGGTAGAGGTGGAGGCCCCTCCCTCGGTGGTGTTGAACCGCGTGCTGCGAGAGCGCCACCTGTGGGACGTGGACCTGCTGCAGTGGAAGGTAGCTGAGACTCTGGACAGACACGCTGAGGTGTTCCACTATGTCCTCAACCGCATGCCACCACACCCCAGCAGAGACTTCCTGGTCCtacggtcATGGAGGACTGACCTTCCCAAGGGGACGtgtgcattggtgtgtgtgtctgtagaacATGAGGACTGTCCCCGGGTCGGTGGGGTGAGGGCCGTGGTTCTAGAGTCTAACTACCTTCTAGAACCCTGCGGCTCTGGGAAGTCCAGACTCACTCACATCTGCAGGGTGGACTTCAAaGGGCGGAGTCCAGAGTGGTACAACAAGGCCTTTGGTCACCTCTGTGCTGCTGAAGCAGCTCGCATTCGCAACTCCTTCCAACCAATCAGCACAGAGGGGCCAGAGACCAAGATCTGACACTAGAGTCTTCCATCCATAGAGCTAGACCCACACATACCTGGAGGGAACTAGACCCAACCTGGTCTGGCCTAGAGCTAGTGTAACCGAGTTGGATTTGTAACCTCACTCCCCAGCCTGAAATGTCTCCATCATCACTATCGAACTGCTAACTTTTCAGTAGCGTAGTTGGCTAAGACGTGATGATGCTCAAGATGCTAGTCACCTGTGTTTGCTAGACAGAGGATGCAAGATCAAGGACCAGTAAGGATATGTGAGTGAGAAGCTATACCGAGGAAGCACAGTGATGTCTGTTACACTAGGCCGAATGATGTCTGGAGCTCCAGTAGGTGCTAGAGGAGGACTGAGAGGCGGAGTATATATTCATAGAGTCCTGAAGCCAATAGGCAAAGCTGAAGCACTAAACCAGCGGATGGCCGCCCTTTCGCCTCTGACCACCGAACATCGATCATCATTTTCTATTTATTTCCCGACGATTCTACATGTTGAATCGTCAGCGTTTGTCGACCCCCGGCAGGTGTGTGCAGCCAACGTTCATGTTGGTCTGTCTTGAAATGTGATGCCAGAACACAGGGACTAAAGAGAGTATGGAGCTTTCTGGACTGTCTACACAATGACACAACATGAGCTCCTTAGGTGCTGGATGTTATTAAGACGTTATTATGATGTTATTAtgacatgtattattattattattattattatttgtattattatgacCGAAAGGGGAACAGAATGATCCATCCAATGTCCATTAGTATTCAGTATTAGAGTTATGTCTAGGACATTTAAGCTCTTTAAAGCTTCTGGAAAgctgtatattattttattaatgTAAAATGTCATGCTTTATGTTAGATATGCTGTATGTGCACGcatgtgtctgtatatatatatatgtgtgtgtgaaaacATACATACAAGTATACtagctgtatatactgtataattgAAAGGCTTAATGCTAAACCTGCATTGTGTCATAGTTATTATAATTCATTTGGTACTAATCTGTAAACTGGTTTTACTGGGCTTCaacagtgatgtgtgtttctGAATGGGTGTAATGTTATTCTATATGACCTTATTGTTTAAGGTTGAAAACATGtctgcgtcctaaatggcaccctgtttcctatatATTGCACCACTTTTTACCAGAACctccatggggctctggtcaaacgtagtgctctgtatagggaatagggtgccatttgggatggagccCATGTGACTCAGGTTTGATCTCCAGACCTGCTGTTGAGAGCTGGCTGGACTGAGCTTCAGTTTAGTTCCAGAGACAAAAAAATTCAattaaacaatgtaaaaaaaacataaaatgtTTATATTGCCTATTTTTACACAGACAAATGCAATTAGAATGGATTAGAATAGAAACTTAATTGAAAGTCGCTCTCTCTTCACTCCATTTGCAGTTTGTTTATTTGTATGTTGTATGTTCCGCTAGTCAACACCTCACCTCACGTGGTGTGTTCTCTACttcacgtcccaaatggcaccctattccctacatagtgcactacttttgaccaaagccctggtTTAAAgctgtgtactatatagggaatagggtgccattcgggaggCATTATATGCCTTTACtctataccaccctgcatcccagtGCTGGCTTcactctgaagctaagcagggttgatcCTGGTCGGTCcatggatgggagaccagatgctgctggaagttgtGTTGCGGGGCCAGGCAATGTGATTGGgaacattgccctgtgtagggtgctgtcttttggatgggacgttaaacaggtgctctgactctctgtggtcactaaagatccatggcacttatcgtaagagttaaccctggtgtcctggctaaatttccCATAAACTCCCATACACTCTTAGTTAGACAAGGGCAAGTTAGAGCTATATTAGCCATAGAATAGTTATAACACTGGTCTCCTAATAGCAGCAGGCTAGGCAGTGGGTTGGTGTCCAGAGTCACGTGCTACACATACAGGACAGAATTGGACTAGAGTCCTTATTTCTGTCAAGAACACAATGACCAGGGGAGGTGTGGGAACACATagcagtgtcacgccctgatctgtttcacctgtccctgtgattgtctccaccccctccaggtgtcgcttattttcccctgTGTTCCTGTGTCTccgtgccagttcgtcttgtatgtttccaagtcaatcagcgtttttcccgttctcctgctttttgctattctcctttttctagttctcccggttttgacccttgcctgtttctggactttgtaccctcctgcctgaccattctcttgcctaccacTTTGGATTATTAAACGTTGTTAGACTCCGAccgtctgcctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2178718 lncRNA downstream 177618 14225799 ~ 14227143 (-) True G1904941
TU2178716 lncRNA downstream 181449 14223082 ~ 14223312 (-) True G1904939
TU2178715 lncRNA downstream 181911 14222622 ~ 14222850 (-) True G1904938
TU2178712 lncRNA downstream 187105 14217410 ~ 14217656 (-) True G1904935
TU2178711 lncRNA downstream 187410 14217129 ~ 14217351 (-) True G1904934
TU2179083 lncRNA upstream 40168 14471652 ~ 14471878 (-) True G1905279
TU2179103 lncRNA upstream 80397 14511881 ~ 14512565 (-) True G1905299
TU2179104 lncRNA upstream 82777 14514261 ~ 14514492 (-) True G1905300
TU2179105 lncRNA upstream 83065 14514549 ~ 14514754 (-) True G1905301
TU2179112 lncRNA upstream 94930 14526414 ~ 14531382 (-) True G1905308
XM_036961698.1 mRNA downstream 2962 14071786 ~ 14401799 (-) False LOC110503343
XM_036961702.1 mRNA downstream 2962 14071786 ~ 14401799 (-) False LOC110503343
XM_036961703.1 mRNA downstream 2962 14071786 ~ 14401799 (-) False LOC110503343
XM_036961700.1 mRNA downstream 3178 14071786 ~ 14401583 (-) False LOC110503343
XM_021582361.2 mRNA upstream 116233 14547717 ~ 14548908 (-) False LOC110503815
XM_021582360.2 mRNA upstream 116233 14547717 ~ 14549440 (-) True LOC110503815
XM_021582358.2 mRNA upstream 135532 14567016 ~ 14585375 (-) True LOC110503814
XM_021582363.2 mRNA upstream 155456 14586940 ~ 14591929 (-) True kbtbd3
XM_021582364.2 mRNA upstream 160547 14592031 ~ 14597730 (-) True LOC110503819
TU2178696 other downstream 190241 14180063 ~ 14214520 (-) True G1904919
TU2178650 other downstream 262033 14089722 ~ 14142728 (-) True G1904877
TU2178616 other downstream 361312 14042970 ~ 14043449 (-) True G1904846
TU2178133 other downstream 646117 13757828 ~ 13758644 (-) True G1904408
TU2178084 other downstream 685310 13716650 ~ 13719451 (-) True rabx5
TU2179185 other upstream 188179 14619663 ~ 14621372 (-) False G1905348
TU2179186 other upstream 188179 14619663 ~ 14621372 (-) True G1905348
TU2179145 other upstream 190711 14622195 ~ 14655274 (-) False G1905324
TU2179146 other upstream 190711 14622195 ~ 14655274 (-) True G1905324
TU2179616 other upstream 509206 14940690 ~ 14941172 (-) True G1905737

Expression Profile