RNA id: XM_021582378.2


Basic Information

Item Value
RNA id XM_021582378.2
length 5270
RNA type mRNA
GC content 0.52
exon number 17
gene id rsf1a
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 14740571 ~ 14760173 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTCTGGGCTCTTTTCTGTCCTCCCTACTCCGTTCATTCTCATCCTACTCCCCGGCTGAAAAATGGCTGCTTTAGCGGCAGCGCAGGGCTCAAACCCCGGTCTCTGCCCCAGTTTCGCAGTGGTCTGCTCGTTCCTGGAGCGCTACGGACAAGCCCTGGACCTCCCCGAACTCACGTTTCCGCAGATGGAGAGGTATCTCCGGGACACATCGACAgtTCCCAAGCCACTGGTGGAGCTGCATGTCAAGCTCCTGAGGAAGCTTGGCAAGTCTGTGTCTGCAGACAAGTGGGAGAGGTACCTGGCTAAGGTATGCCAGGACATCAACAGTAGCTGGGCTTGGGAGCTGGAACACAAGGGCTACCAGGATTTGAGCATGGAGTGCAAAACCAGCATCCTCAAaTACCTGTGTGAGATCCAGTTTGATGACAACCTGAAGTTCAAGACGTTGGTGAACGAGGAGGAGGCGGAGGCAATGAGGTTGCAGCCCTtgggcagagacagacagggcctgatgtactggctgcagactgacGCCCAACACAACATTCGCCTGTATACAGAGGAACAGGACGACTGGGACGGATCCACCTGGAGATGTATCGTCAGAACCCGGAACGACTTGGCCGATGCTCTGGACCTCCTGAAGACCCAGCTGGACCCAGAAcacaaggagaaagaggagggagagacggagagaaagaaagagatggacagagagaaggagggaggatcCAACTTTGTCAAAccggtggagagggggagaagacacACAGAGGAGGGTGAGGCTGGAGGAGAGgtaaaggaggaggaagaggagaaggcaAGACAGAAGAGGAAGGCTGAGGAAGACAAGAACGAGAGtaaagatagagagaaggaggaagaggaggataagCGAGAAAAGAGTAGATCATCTACCTACCCAGAATCCACGAGTACGGATGACAACATGGCATCGTTAGCAGAGAAGGAAAACGCAACCAAGTCTGAACTGTTATTCTCAGTGAAAGAGGAAAACATTGCAGTTGAGATGAAGGAAGAAAAGGAAACGAAAAAATGTgatgagaaagaagagagagagacacagagtgtgaggaaggaggagaggtcaGAAGTGATTGACAACAGAGTGAGCACCATCACTGCGCTCGTCAAAGAGGAGACCCAAATGCTTAACAACTCCCCTAGCAACGCTGTCTCCGTCGTCATGGCGCCCGTCTCGGCAACGACAAAACAGGAAGTTCCTCCTGTGAAGGAGGAAGCGGAGCGGGCCCTGAGGACCGACCAGCAGGCCAAGATACCACTGAAGAAGAGAGAGCTCTTTGGCGCTAAccgtcaccatagcaacacacatcacaacaatgaCATGCACAGcaaccaacacaacaacaacagccatagCAGCAGTACTAGCAGTAGCATCATTGTCCGTAACCCTTCAGTAACACATACCAAGGAGGAGCAGCTGGGGAGGCAGTCAGCGCCACCTGGGGGCCTAGCTGTCCCACTGCCAGAGGAGCTGACCAATGGGGGGGCTCCCCTAAACGGGCTTGGAGGGCTCACAGGGGGTATAGGTCATGTGGGGGTCATCTGCAGGTCAGCCTCGCAGCAACAAGATGGTGGATTGTTCTGTACGGACAGAACCAGACCGAGGTCAGAGGAAGGGGCTGAGAGGGCCAGCGCTCCAGACAAGGAGAGGAGCAGGCAGTCAGTCCTGGTGAGGAAGAGTCCTGGCTGGGGAGAGACTGGAGCCCCAACACCCCTAGAGcctagaggacaggagagacaggcaggaggagaggagaggcaaaggaaggagaaaggagagagatccAGGGAGAGATTAGGAGAGGATGGAATTGAGAAAGCGAGGGAGAGGTTCGATGGAGACCTGtctggagagagggatgacaacacaaaagagaaagaagagaaagagacaaagaccaCCCTCCATATGGAGAAAAGCGAGGGATGCCATggaacagaggaagaggagaagaagagtacTTCAGGAGAGAAGGAGCAGGAGTCAGAGAGCAGTCAGActgtagaaggacagagggaCCAGGGAGAGGCCCTCAGTACAGACACACCAGCCCATGCCAGGGTGAGGGGAGCTGGGCATGGAGCAGCAGACCGGCCGGGTCCCCTTGAGGCCTCCTCTGAGCTGCAGAAAGAAGGGATCAGGCTGAAGATAAAGATCCCTCCCAACCAGAGGATAGAGAAtgtgagagaagaggaggagaaggcggAGGAGCAGGGAGATGGGAGGTCTCTGCGGAGATCGGCTCGGATCTGCAGACCCAGCCCAAACAAGGCGAAGAGCCAAGATGCACCCCCAGGAGtgaggagggaagaagaggaagagaagactgCTCAATGGCAAAAGAAGAGAGCAAACCCTGAGGGACAGGGAGACAGCAGGACTGTAAAGagcAGACGAAGACAACGAGGCCCCCGCTGGTCAAACACTCGAGCGAAGAGATGCAAACcgaatgagggaggagaggagggggaggagagagggagaaaggaggagagagggagggagggaagtattTGTGACTCAGATGACTCTAGCCAATCAGAGGAGATGCCTAATGAAGATCCCTGCAGCCACTGTGGACTCCCCAACCACCCCGAActgATCCTGCTGTGTGATTCATGTGATAGTGGTTACCACACCGCCTGCCTCAGACCCCCTCTCATGGTCATACCTGAGGGAGAATGGTTCTGCCCACCCTGCCAACACAAACTGCTGTGTGACAGACTAGAGGAgcagctgcaaaatctggattgCGCTCTGAAGAAAAGAGACCGAGCTGAGAGGAGGAGGGAGCGTCTGGTGTATGTGGGAATCAGTGTGGAGAACATCATTCCTcaggaaggggaggaagaagaggagaaactGGTGAAGAAGAAAGATGCAAAAAATACCAAAAACCTGGGAAGGAGGTCTACCAGAACCAGGAAGTGTATCagctacagGTTTGATGACTTTGATGACGCCATTGATGAAGCGATAGAGGAAGACGTCAGAGATGAGGATGGAGGAgAGGTGGGGCAGGGTAAGGACATTGCCACCATCCTatcagaggaggggaaggagaaacGAGGACCAACCACAGCTCAGGCCCCTCCCACCAGGAGCAGGAAGAGAAGGAGACTCAACGACCTGGAGAGCGACAGCACGGCTGCAGAGAGCGAGGAGGAGTTTCAGCTCAGCGCCAGtacggaggaggaggagtttgTAGCGTCAGGTGATGAGGAAGCAGCCAGTGATGTGGACAGCTTTGCCAGCGACCCGGGCTTCGTAAGCCAGTCCACACGGGCACAGAGACGGGCacctaaacagagaacctccagGACCGCAGCAAAGTGCAAGAAACGCCCAcgcagacagaggagaggatggggggaggaggaggaggagagtgaagaggaggaggaagaggagatggagACCAGTGATTTGAGTGACAGCGATGGGGACAGGAAGAGGTGTGGTTTAAGGAGGGGCCGGAAGCGGGAGGTGAACTACCGCGAGACCTCAGAATCCGAGTGTTCCCAGGCAACCACCAATAAGGATAAGGCTAAACCCCGCCGCCGTCGTCTCTCCAGCTCAAACAGCGATGAATCCTCCCATTCGAGACAGtctgaggaggaagagaagagaatgaggggaaagaggcggagagaagaggtggaggagagtagAACAaggggaaagaagaggagaggagagacgatggGCAGAGGGAAGCGGAGGAAGGTGTTGATAGAACAGCGGAGGAAACGTCTAgctctgctgaagaaaagcagaccctCCACTAAAGATGATGAGGATGATAACGATGAAGGAGAATCGGAGTCGTCATCCGAGGAAGATCGTCCTATCCGCAAACGACTTAACCGCATCGActctgatgaagaggaggagaaagagggaaaaaatgaggaggacgaggaagaagaggatgaagaggagaagaagCTGAGAAAGCCGTCATCAAAAGACAAGGAATCAAACAGCCCTAATGGACAGCAGGCCTCTAGAGGCTCAACACAGCCTGGGTCTGAGAGTGCAGCCTTACCCAGGGACAGAGCAGCCAGAGCTGGGCAGAACAGGTCTAACAGCCCCCCACCTCCTGACCAGTCAGACGCATGATGACATAGACttttagttatattttgttttactTTCTTGCCTTTCACCAACAACCTTTCAACTGGATCTCTCATTACCtcatcatccctccttccctttctcctttccctcctcctcccttcctctaaaCAGGATGAATAACTACTGGACCAAACGCACTAGCGCcatccaacacacagacacacaacacaatacacagccAAAGGGTGAAGGACTGTCCTGAGCACCAGACAGACACCCTCCTTAGCTGTTCTCCAGCTGTTCTGCTCGGCTGCTGATCCTGTAAAATACTAGatgttctcttctctgtctccctctaaaATTGTGTTCTATATACCATGAAGGAGAGAGCGAATGGACTGGAGTGTTTAATAATCCCAGAAAATAGTGAGTTGGATGTTTTAAACCAATGGAAGAGCTGCTCTTGTTGCTCTGCTGTGAACCAGGAAGATAACTACCAGAAAGAGATTCATACAGGCTGATTCATCTCAAATGACACTTTGCAGATTTGACCACAGTTACAACTACAGTGGGGGCTGGCAGATGGACACTGGCAAATTATCTAACTAGCTATGTTCAGTAAATCAATTCACTGTTGACTTTTATGTGTTAGTTGAAGTGTTCCTTCTCTCACTCAGTGAGGACTGAATAATTTATCCACAGAAGTCTACTACTCTCCATTCCAGTCTATACATTCTACAACCTACTACTATTTGAGAAGATGGGGTCATATTCATAAGTCTGAAAaaggactgaaacagggagggactacctgaacttgcaaaatgttttgctgctgtgtgccctaatgaatatggCCCCAGGTGTGAATGCTGTATCTGGTCCTCAGTCCACTGTCTGTTCTGTTTTCATCCTCAGAGTTCCATCTGAACCTCTTTATAGATTCTATCATTCCAGCTCATTGTTCTTATGTTTTCTCCCCCCCCCAAAATATCAAATATTTTGAAATGTTCAGTCTGAAAAAAAGAAATCACCCTGTTATTCATCCacagtgtatgtacagtatgtttataGTTGATGCTGTAACATAGGTGTTTTATAAGTTATTAAAAACCAATATTCAAGCATCTCACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2179226 lncRNA downstream 8387 14728965 ~ 14732184 (-) False LOC110503827
TU2179231 lncRNA downstream 8387 14728965 ~ 14732184 (-) True LOC110503827
TU2179132 lncRNA downstream 53599 14685299 ~ 14686972 (-) True LOC110503824
TU2179131 lncRNA downstream 53827 14624102 ~ 14686744 (-) False LOC110503824
TU2179168 lncRNA downstream 56566 14639806 ~ 14684005 (-) True ompa
TU2179289 lncRNA upstream 29797 14789970 ~ 14790397 (-) True G1905428
TU2179591 lncRNA upstream 109228 14869401 ~ 14908388 (-) True G1905713
TU2179593 lncRNA upstream 110548 14870721 ~ 14910363 (-) True G1905714
TU2179597 lncRNA upstream 132479 14892652 ~ 14894189 (-) True G1905718
TU2179601 lncRNA upstream 140446 14900619 ~ 14903836 (-) True G1905722
XM_036961384.1 mRNA downstream 5933 14728963 ~ 14734638 (-) False LOC110503827
XM_036961378.1 mRNA downstream 19752 14703576 ~ 14720819 (-) False LOC110503826
XM_036961381.1 mRNA downstream 19752 14703576 ~ 14720819 (-) True LOC110503826
XM_036961379.1 mRNA downstream 19776 14703576 ~ 14720795 (-) False LOC110503826
XM_036961380.1 mRNA downstream 19776 14703576 ~ 14720795 (-) False LOC110503826
XM_021582380.2 mRNA upstream 78999 14839172 ~ 14873526 (-) False LOC110503830
XM_021582381.2 mRNA upstream 79159 14839332 ~ 14873526 (-) True LOC110503830
XM_021582383.2 mRNA upstream 118189 14878362 ~ 14913662 (-) True LOC110503831
XM_036961309.1 mRNA upstream 347206 15107379 ~ 15119221 (-) False LOC110503833
XM_036961308.1 mRNA upstream 347206 15107379 ~ 15135432 (-) False LOC110503833
TU2179145 other downstream 85297 14622195 ~ 14655274 (-) False G1905324
TU2179146 other downstream 85297 14622195 ~ 14655274 (-) True G1905324
TU2179185 other downstream 119199 14619663 ~ 14621372 (-) False G1905348
TU2179186 other downstream 119199 14619663 ~ 14621372 (-) True G1905348
TU2178696 other downstream 526051 14180063 ~ 14214520 (-) True G1904919
TU2179616 other upstream 180517 14940690 ~ 14941172 (-) True G1905737
TU2179620 other upstream 185825 14945998 ~ 14946447 (-) True G1905741
TU2179661 other upstream 323136 15083309 ~ 15084752 (-) True G1905780
TU2179941 other upstream 496547 15256720 ~ 15257197 (-) True LOC110503349
TU2180019 other upstream 593767 15353940 ~ 15354573 (-) True G1906115

Expression Profile