RNA id: XM_036961309.1


Basic Information

Item Value
RNA id XM_036961309.1
length 4103
RNA type mRNA
GC content 0.47
exon number 13
gene id LOC110503833
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 15107379 ~ 15148479 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCAGCCGCTCTCCTGCCCCAACCACGAGGGCAAGGTGATGGAGTTCTACTGCGAGTCGTGTGAGACTGCCATGTGTTTGGAGTGTACTGAGGGAGAGCACAGGGAACATGTGACTGTCCCTCTGAGAGATGTCTTGGAGCAACAGAAAGCAGCCCTGAAGACCCAGCTGGATGCCATACGCAACAGGCTGCCCCAGCTGAGGGCTGCTATAGAGCTGGTAGGGGAGATCTCCAAGCAGCTGACTGACAGGAAGAACGAGGCGGTGACAGAGATCAGCAGTACCTTTGAGGAGCTAGAGAGGGCGCTACACCTCAGGAAGACCACCCTCATCACTGACCTGGAGAACATCTGCTGCACCAAGCAGAAGgtgCTCCAGgcccaactctcctctctcctgcaggGTAAGGACAACATCCAGAGCTGCAGTAGTTTTACGGAGCAGGCTCTGAGCCATGGCAGTGCTACAGAGGTTCTGCTGGTCCAGAAACAGATGGGGGAGAGGGTCAGCGCCCTGGCCCGACACACCTACCCAGAACAGCCCCATGAGAATGGCCATCTTGACTGCCAGGTGGAGACAGAGGGTCTTCGTCGTTCTATCCAGAACCTGGGCGTGCTCATCACCACGGGAGCCATTGGCCACACCTCCGTCGCCACGGGAGAGGGACTACGCCACACACTGGTTGGCCAGCACACCAGCGTCACAGTGACGACCAAGGATAAGGACAGCGAGCTGGTAAAGACAGGCAACGCGGCGCTGCGGGCCGAGATTATGTCGGTGGACGGGGCGGTAACCACGGAGACGGAGGTGGTGGATAATAAGAATGGGACGTATGAGGTGGGCTATACCATGCGCTCTGAGGGGgagttctccttctctctcctcctatacgACCAGCCGGTCAGGGGCAGTCCGTTCCGTCTGCGTGCGGTCAAGCCCTCAGACGTTCTGCAATCTCCAGACGATGtgaagaggagggtgaagagtCCTAGTGGGACGGGGGGCCACATCAGACAGAAGGCTGTGAGGAGACCCTCAAGTATGTACAGCACCACCAAGAAGAAGGAGAACCCCATCGAGGATGAACTCATCTACAGAGTCGGAactagagggagagataaagCAGAGTTTACAAACCTCCAGGGAATCTCCACCTCCAGCAACGGACGTATCGTAGTGGCTGACAGCAACAACCAGTGtatacagGTGTTCTCCAACGATGGGGCATTCAAGCTGAGGTTTGGGGTCAGGGGTCGGTCGCCGGGGCAACTGCAGCGCCCCACGGGGGTCACCGTGGATATGAACGGTGACATCATTGTGGCCGACTACGACAACCGCTGGGTCAGCATCTTCTCCTCCGACGGGAAGTTCAAGAGTAAGATCGGGGCGGGTCGTCTGATGGGCCCTAAAGGAGTGGCGGTGGACAGGAACGGACACATCATCACCGTGGATAACAAGGCCTGCTGTGTGTTCATCTTCCAGGCCAATGGGAAGCTGGTCACTAAGTTTGGAGCCAGGGGGACATCAGACAGACAGTTCACAGAAAAAAGTGGTACAAACATTTCACTGGAACCCAAGCTGAGTAAATCTGGCCCTGCGTTCAGTCCCCACTTTGTGGcgatcaacaacaaaaatgagaTTGTGGTAACAGACTTCCACAACCATTCAGTGAAGGTGTACAGTGCAGACGGGGAGTTCCTGTTTAAGTTTGGTTCCCATGGCGAGGGGAACGGACAGTTCAATGCCCCGACAGGCGTTGCCGTGGACGCCAACGGGAACATCATTGTTGCCGACTGGGGGAACAGCAGAATACAGGTGTTTGATAGTTCCGGGTCGTTCCTGtcctacatcaacaccacagcaGACCCTCTCTATGGTCCACAGGGCCTGTCTCTCACATCTGATGGACACGTGGCTGTGGCTGACTCTGGCAACCACTGCTTCAAGGTTTACCGCTACCTGCAGTAGGCAGAACCATTGCTTTAGGGACGGTCTGTTGCAGGCCTACCACTCCCAGCGTGTCCCAAATagctccctattcccttcatagtgcactacttcttaacagaaacccatagggctctggtcataagtagtgcactatataaggaataggtttccatttgggatgtacagACAAACCAATCACAGCCCGACCTGGGTCCAAAAATAAGAcaaatacttgaaagtattttaaGTGTTTGGGAGGTGCTTGATTTACCTGTTTATTTGAGTTTGCGCTTTTGGGACTGTTCCATTGGTTCAGGCAAACCAAATCAAGTGCAGCACTTGAAGTATTGGAAAGTATTTGATCTAATGTATGTATTTTTGCCCCCAGGTCAGTGCACGTGTTAGCACTGAGCAACGACACAAACCAATGTACTATACATAAtatacaggtgcaatgatctttCCCATAGCTGTCCCTTTGATTTGCACATCTGATCAGATCCACCTCATCCAGTTAGTGTTCTCTGAACCCCCCAACATCATGAAGTAACAATATAACCCCCGTTGACTCCTCCTTGTGCTGTGTTATGGAGTTTACtgagtctgaaatggcaccctattctttgtgtagttcactacttttgacctgggcccattgggctctggtcaaaagtagtgcactatgccatttgggatgcaacctacTTGTGTAGAGTGTATTTACCTCTTTGTTCAGTCATTGATGTGAAACTACGAGGAGGTATGAAGGAGATATgaagtgtgtatatagtgtaactGATATTAGGAGACCAGATCAGTGATGGGTTGAAGTACGTGTATAATAATTGAGCCATGTTGTGAAGGAGCTCGTCCCAATGCATGAAGTTTTATCTTTACCTTGTTATTAACTCAGACGTGACGACATAAGTGCCGTTTATAAACTGTTTCTTCGCCATGGTCTAAGTGCAACGAACAATGTGCTTACAGTGAAACCAACCAGCGACGAAAAGCAAAAGCTTTTGAAACATTTCTCTTTCAGTTGTATCTAAGAGCAAACTGACTTAACTTATAGCCATCTCACATATAAAAAGTCATCACCATCTGTGCATTGATTTGCTGTATGAACTGTGTACAATGGATCATTATGCAGCTTTATCTGTGCTTTCATTTTAAAACACATATCTTTTGGTTAATCCGAGAACAGCAGTCTGGCATTCCAGCGTTTCTATGTACGGCAGCTGTCCTAAAAGTGTGCTTTTTAAAACAGGAGTTCAGCTGGAGAAGAGATGTGTCATGATTATTGCATATGTGAGCAGCAGAATTATTCTAAACTTTGTTATCTGTTCTTTTTAAAAAGGAAAAAAATTCAAACATGGAATtgctaatttattttattttatacactAGTTCAGCATTTACAAATTATTTTTCTAATTtgatgtgttttattttttagaaatTCACGCCTTTGTCATTTGTCTCCATATATAGTAAAAACCCTTAGCCACTTTGAGGGGATTAGTAGAACAAACAGTGAGGATTTAGAATTTGAAAGATTTGATTTGCCAAAAAATACATAGTGGGTTTTGAATTGTGACAAGTTGGAGTACATATTGAAAACCAATACCAATGATTATATTACTTAGTGTTATTGAACATGCAAAACTACATTAGATATTTGACTAACTTCTGGGTTTCAGTCTTAAACACTGTCAACAGTAGATTTATATAGTTTGTTTTCAGAAGCCACAGTGTGAATGTATCAACAGCTTCAACGTGTGTTGAAGGACTAGAGTTACAATGTTTCATTGCCTGGTTATCACAGTTCATAGCATTTCTTTAGCGGGTTATAACGGTTCATTACCAATTAATAACAATATTGTCCTGAGGGTTTCATTAGCATTAGATGAGCTATAGCGCtctcactccccctggtggtCACCACTGTAACAACACAGCACCCTTGGTGCCAAAATAGAGTCCCTATAACCTCTCTGACGTCATGCCAAACTGGCTACACAGTCTATCACAGGTTGTTTTTATTAAGGAGTATTAGACACATCATCTCTTTGTGTTTCAAAAATATGTCACTCAATCTTCTTTCTATTTTCTCTGTGAATATGCACTGGTAATAAAAGCACATGGTTTATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2179688 lncRNA downstream 11424 15095459 ~ 15095955 (-) True G1905800
TU2179658 lncRNA downstream 94884 15012233 ~ 15012495 (-) True G1905777
TU2179652 lncRNA downstream 103735 15003403 ~ 15003644 (-) True G1905771
TU2179649 lncRNA downstream 113224 14993924 ~ 14994155 (-) True G1905768
TU2179645 lncRNA downstream 118888 14988258 ~ 14988491 (-) True G1905764
TU2179767 lncRNA upstream 93352 15212573 ~ 15212906 (-) True G1905875
TU2179804 lncRNA upstream 118963 15238184 ~ 15238424 (-) True G1905912
TU2179946 lncRNA upstream 129112 15248333 ~ 15248549 (-) True G1906046
TU2179948 lncRNA upstream 130227 15249448 ~ 15249650 (-) True G1906048
TU2179949 lncRNA upstream 130472 15249693 ~ 15250162 (-) True G1906049
XM_021582383.2 mRNA downstream 193717 14878362 ~ 14913662 (-) True LOC110503831
XM_021582380.2 mRNA downstream 233853 14839172 ~ 14873526 (-) False LOC110503830
XM_021582381.2 mRNA downstream 233853 14839332 ~ 14873526 (-) True LOC110503830
XM_021582378.2 mRNA downstream 347206 14740571 ~ 14760173 (-) False rsf1a
XM_021582379.2 mRNA downstream 347206 14740571 ~ 14760173 (-) True rsf1a
XM_021582386.2 mRNA upstream 33642 15152863 ~ 15167618 (-) False LOC110503834
XM_036961960.1 mRNA upstream 33642 15152863 ~ 15167618 (-) True LOC110503834
XM_021582391.2 mRNA upstream 51719 15170940 ~ 15179775 (-) False LOC110503835
XM_021582389.2 mRNA upstream 51719 15170940 ~ 15179776 (-) False LOC110503835
XM_021582390.2 mRNA upstream 51719 15170940 ~ 15179776 (-) False LOC110503835
TU2179661 other downstream 22627 15083309 ~ 15084752 (-) True G1905780
TU2179620 other downstream 160932 14945998 ~ 14946447 (-) True G1905741
TU2179616 other downstream 166207 14940690 ~ 14941172 (-) True G1905737
TU2179145 other downstream 452105 14622195 ~ 14655274 (-) False G1905324
TU2179146 other downstream 452105 14622195 ~ 14655274 (-) True G1905324
TU2179941 other upstream 137499 15256720 ~ 15257197 (-) True LOC110503349
TU2180019 other upstream 234719 15353940 ~ 15354573 (-) True G1906115
TU2180103 other upstream 380983 15500204 ~ 15500760 (-) True G1906198
TU2180125 other upstream 393138 15512359 ~ 15513093 (-) True G1906218
TU2181985 other upstream 917766 16036987 ~ 16044305 (-) True LOC110503846

Expression Profile