RNA id: XM_021582387.2


Basic Information

Item Value
RNA id XM_021582387.2
length 2818
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC110503835
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 15170940 ~ 15179778 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTACGTGTAGAGCTAGATGGGGGAGGGACTGGGCTTTAGGGATTTTATCTGCATACTGTGCTCGGTTCTACCCGGGGATGCTAACGGAATCACGACTACAATCATGCGTTCATCAACAGACGAAAAATAAACATTGTAACGGTGTTATTCCGTTTATAATAGTAATATTTTATGAAATACCGTGCAGAATAAGCAGCAACATTTGACATTTTGGGAGACTGGACCTACACagcagACCACCACCATGGCAGACAGTTTTATGGGCAAGGCAGCTACCATGGAGATTCCTATCAACAGCAATGGAGAGACCCTGGCCGAGGATGACAGTTTGGAGCAGGCTGCAAAGATTCAGTGGACCTTAGATGAGAAGGACTTGCAGCAGGTGATGGTGTCTGGTCCCAACCTGAATGAGACCAGTGTCGTGTCTGGAGGCTACGGAGGACCTGCAGGGGGCATCATACCCACCTCCTCCATCAAAGGCCCTGCTATCCGCTTCAACCCTCAGTATGTGGACAGGAGAAGCCCCCCTGCCCCTAACTGTGCCCCTGTCCCTGGAGCCCAATCTCAGCCCACAGACCTGCGAATGAAGTCCAGGGGACTTGGTGTAGGTCTGGTCTCCAGCCAGTCAGCAGACAGAATGATAACCAACCAGAACCAGACCGGCCAGACATTCACAGGATCGGGGATGCACCACAGTAACAGCAACCAGAACATGTCAGTGGAGGAGGCTAACCGTGGTGTGGCTGTGGAGAAACTAGACAGCGTTAAGAAGTGGGGCATCAACACCTACAAGTGTACCAAGCAGATGTTCTCGGAGCGGTTCGGCCGTGGTTCTCGGACGGTGGACCTGGAGCTGGAGGCCCAGATAGATGTGCTCAGGGACACCAAGAGGAAGTACGAGTCTGTCCTGAGACTGACCAGCGCCCTGACCAGCCACTTCTACAACATGGTCCAGACCCAGCAGGCCTTGGGGGACACCTTCGCAGACCTCAGCCAGAAATCACCTGAACTTCGGGATGAGTTTGGCTACAATGCGGAGACCCAGAAGTTGTTGTGTAGGAATGGGGAGGCTCTGCTTGGTGCCATCAACTTTTTTGTGTCCAGCATCAATACACTGGTCAACAAGACCATGGAGGACACACTGATGACCATCAAACTGTACGAGGCTGCAAGgcTGGAGTTTGATGCGTACAGGGCCGACCTGGAGGAGTTGAGTCTAGGTCctcgtgatgctgccaccatggtGCGTATAGAGGTGTCCCAGCAGCAGTACCAGGTGCAGAGAGACAAGTACGAACGGCTGCGCTCAGATGTAACCATCAAACTCAAATTCCTGGAAGAGAACAAGGTGAAGGTGATGCACAAGCAGCTGCTGCTCTTCCATAATGCTATCTCAGCCTACTTCGCTGGGAACCAGCAGCAGTTggaacagacactgagacagtTCAACGTCAAGTTAAAGCCCCCAGGGTCAGACAAGCCCTCCTGGCTGGAGGAGAGCTAGAGTGATTAGCTCCCAGTCCTCTGGGCctgtatcaagcatctcagagtatgAATACTGATCCAAgaacagttttgccttttagatcataatgaatcagattatatGGACAGGCAGGACttgatcttagatcagcactcctactctgagatgcttgatatGTACGGCCCCAGGTCTCAGTCAGGTCTCTGGTatatatgggacacacagatggaGAGATACACTGGGCTTTCAAGAAACGAGGACTGGATAGATGGATGAACAGATATATGAAATCTACACAAACTGTATATAAGAACCAGAGATGGGACAAGTAGAGACTAGTGATGATGATACTAAGGGGAAAAGAACGCTTATCTAGTTTCATTTAGTTTTGACAATTTGTTTGAACGTCGATTTGTTGTGTTATTTATTCACAACAGAGCCTCATGATATTGTTGCTGTGTAGCGTAACTTTTAATTCATCTTACTTTGAGAAATTATTCCAAGCTTATACTTTGCACATAAATGTAATCATTCTTTTCAAACTGTTTTCACTCTTTTGTAAAGTGTTATGCAGTAAAGCTTCCAGAGGTCGTCATTTGAAAGGTCAGTAAACTGTTTACATATGTAGAGGATATTAAGAATCTGGACCGGTTACATTGTTTGCACCAGATGAAGATTGGAGTTAGATTTATGAAAGCGAAGGGAGAAACCTACAGTCTGGGGTACTATTGATGACAGAAATTATGGGTTAAAGGGGCAATCCTTGATTTGTAAAACAAGCAGTCAAGTATCAATGGCTATATATCATGAATTTAAGTCAAAAAATAGATTTGTACCAATTCCAGATTGCCCCTTTTTCTATCAACGATTTTGAGTACAGGAAGTACGACTTTTTCATTTACAATAGATAATCTCCCTCTGATTAATCCTACAGATAATGTTATTACACATGTTTATTATGTTATGTCTTTATAACATATAATCAAATAGAGTTAATATATGTTTATAAAAATACCTCTACTAATTCCATTCAGATGTATATGTTCTTGAGTTTTTCTTCAGTTTTTTTTCTCCCATTTCTACATCAATGTTGTCTCCATTTTAAAACATATGGACCTGGTGTACAGTGTATGAAATGATGGTGGTTTATAGTGTATGGTTTGATGTTTCCATACAGACTTGATATTTCCCCACAAAAGCTGTACAGTAATAACACTCGTCCATCTGCTGTCCACTGAGTATATTGTAGTCATCACCTGTATAAGTACTGTACCATATTGTGTTCACACATTTACATGGCAATACAATCCAAAACATGGCTGAAAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2179688 lncRNA downstream 74985 15095459 ~ 15095955 (-) True G1905800
TU2179658 lncRNA downstream 158445 15012233 ~ 15012495 (-) True G1905777
TU2179652 lncRNA downstream 167296 15003403 ~ 15003644 (-) True G1905771
TU2179649 lncRNA downstream 176785 14993924 ~ 14994155 (-) True G1905768
TU2179645 lncRNA downstream 182449 14988258 ~ 14988491 (-) True G1905764
TU2179767 lncRNA upstream 32796 15212573 ~ 15212906 (-) True G1905875
TU2179804 lncRNA upstream 58407 15238184 ~ 15238424 (-) True G1905912
TU2179946 lncRNA upstream 68556 15248333 ~ 15248549 (-) True G1906046
TU2179948 lncRNA upstream 69671 15249448 ~ 15249650 (-) True G1906048
TU2179949 lncRNA upstream 69916 15249693 ~ 15250162 (-) True G1906049
XM_021582386.2 mRNA downstream 3322 15152863 ~ 15167618 (-) False LOC110503834
XM_036961960.1 mRNA downstream 3322 15152863 ~ 15167618 (-) True LOC110503834
XM_036961307.1 mRNA downstream 22461 15107379 ~ 15148479 (-) True LOC110503833
XM_036961308.1 mRNA downstream 35508 15107379 ~ 15135432 (-) False LOC110503833
XM_036961309.1 mRNA downstream 51719 15107379 ~ 15119221 (-) False LOC110503833
XM_036961079.1 mRNA upstream 72680 15252457 ~ 15298489 (-) False LOC110503349
XM_021582393.2 mRNA upstream 235760 15415537 ~ 15443172 (-) True LOC110503839
XM_021582394.2 mRNA upstream 419306 15599083 ~ 15629175 (-) False LOC110503840
XM_036962006.1 mRNA upstream 419306 15599083 ~ 15631487 (-) True LOC110503840
XM_021582397.2 mRNA upstream 474774 15654551 ~ 15664278 (-) False LOC110503841
TU2179661 other downstream 86188 15083309 ~ 15084752 (-) True G1905780
TU2179620 other downstream 224493 14945998 ~ 14946447 (-) True G1905741
TU2179616 other downstream 229768 14940690 ~ 14941172 (-) True G1905737
TU2179145 other downstream 515666 14622195 ~ 14655274 (-) False G1905324
TU2179941 other upstream 76943 15256720 ~ 15257197 (-) True LOC110503349
TU2180019 other upstream 174163 15353940 ~ 15354573 (-) True G1906115
TU2180103 other upstream 320427 15500204 ~ 15500760 (-) True G1906198
TU2180125 other upstream 332582 15512359 ~ 15513093 (-) True G1906218
TU2181985 other upstream 857210 16036987 ~ 16044305 (-) True LOC110503846

Expression Profile