RNA id: XM_036962006.1


Basic Information

Item Value
RNA id XM_036962006.1
length 4489
RNA type mRNA
GC content 0.48
exon number 9
gene id LOC110503840
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 15599083 ~ 15631487 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCACAACTCCACTGGACTCCTGTTCCTAATTTCTACACCACGTGACGGTGGGAGTGAGTCAAATTTAAACTCCTTCAGAAACCCAACTCAATTCAGCTCCTATAAAAAAATTCAACCATTTTATAACAGAGGCATCTTCTATACCACGGCGAATGAGGTTTGTCCTTGTGGGACTAAGATTCCCTGAAGAAAAGCACAGCTAAAGGGGAGTACAGAGCAGAGGTCAAGTTCGTGTGAAGGGCAGAGCAATAACGTGGAGAGATGCTCCAGGAGAAGGCCTCAGCTGTGACGGATGACAGTGTGACTGGGGTCCAATCTGGAGGGCCAGATCTCAGCCCTGACTCCTCACACTTGGGCCTGCCTACAACTCCTAGCACCCCCCAGGGCAATGAGCCAGACCAGAATATTGAGAACATCAAGGTTCTTCTTCATGAGAGGGAGCTGTGGAAGAAGTTCCATGAGGCGGGAACAGAGATGATCATAACGAAAGCAGGCAGGAGGATGTTCCCCAGCTACAAGGTTAAAGTGACGGGCATGAACCCGAAAACGAAGTACATCCTCCTCACAGACATTGTCCCCGCCGACGACCATCGCTACAAGTTCTGTGACAACAAGTGGATGGTGGCAGGCAAGGCGGAGCCAGCCATGCCAGGGAGGCTCTATGTCCACCCAGACTCCCCAGCTACAGGAGCCCACTGGATGAGGCAGCTGGTGTCCTTTCAGAAGCTAAAACTCACCAACAACCACCTGGACCCCTTTGGGCATATCATCCTGAACTCGATGCACAAGTACCAGCCTCGGCTCCACATCGTCAAGGCCGACGAGAACAACGCCTTTGGGTCTAAGAACACAGCCTACTGCACTCACGTGTTTCACGAGACAGCCTTCATCTCTGTCACCTCCTACCAGAACCATAAGATAACTCAGCTGAAGATCGAGAACAACCCGTTTGCCAAGGGTTTCCGTGGTAGCGACGAAGGGGACCTGCGTGTCTCCAGACTCCAGGGAAAAGACTACCCAGTGATTTCTAAGAACATGGTTCGCCAGAGGCTCCTCTCCTCACATGGTCACCGGACGGGGAAGCTGGGAGCTGGGGTGCACCTGTCGGGGCACCCCCAGGTCCTCTCCCACTACCAGTACGAGGGTGGGGTGCCCCTGGGGAACTCAGACCACCAGGAACACATCTCCAATTCCTTCCCTCCAAGCCGAGAGCCCAGCCTGCTCTACCACTGCTTCAAACACAGAGATAACACCAGGCACTTGGAACTGGGTTGTAAACGGCCATATCTGGACACAGCACTTCCAGCAGTCTCAGAGGAACACTACTTCTGCTCTCCTCCCACCTACgagcctccactgctgtcccacCCCTATTGCGGTGAGGCCATAAGCTCCAGGGAGGCCTGTATgtacggagggatggagggagagaacggGCACGGGGCTGGGGGTGCTGACGACCTGGCTCCCCCCTCTCTGAACTGCAACATGTGGGCGTCGGTGCAGCCTTACCCGCGGTACAGCGTGCAGACAGTGGAGGCTGTCCCCTACCAGCCCTTCACTGCTCACTTCACCAGTACTGCCACCGCCACCTCCGTGGTGCCCCACCACACCCCCACCGGACCCCCTCGCCCCCAGTCCGACATAGGAATTTACAGTCCAGCCACAGCACAGCGAGGCCTGGCCACCATCCCCTCGTCGTCCTCCATCTCGTCTTCCTCTCCACCGGTTCCTGGTTCCAGGGGTAGCAGGCCGGTGGTCCAACCTCCTCTGTACCACAGGAAGCCTGGGCCTGGGTCTCCTCTCCGGCCTCACAGGGAGTTCTCGGCCTTCCCAACACAGAGCACCCTCCCATCCATCCGGGACCCGTCCTACCAGTACCAGATGGGGCAGAGCAGTGTAGGGGCCCACTGGAATGATAGCTAGGGCTAGGGAGTGCTGTGTGGCTCCTGAGGCAGCGGCAATGTCCACCCATCCGGTCAGTTCAgaatcagccagccagccaactttGAACTGCCTGTGAGGCATCTGAAATTAGATTATGTTGAAATACAGCCATGATGACCATGATGAAGCCATAGTAGTTTAGCATGAGGAGAAGCAGATCAGAGTGACCAAACTCCAATAGAAGCCTACATCTGCCTAAAAGATCTGCTCCTTCAGATCCATGTTGTCCTGACTGGAGGAGCATTGTGCCTGTGATGATGATAATGAGTATTCCAGAGGAAGAACCCCTCTATAGAATTATGCAAAAGCTTGCCATATAATGGCTTAAAAAAATCATCTAAAACGTTCAATGTCAAACTGCCAAAAGGAGATGTGTTCAGCAAAGTGAAAAATATCCATTATGCCTTTGAAGTAGTGTGTTTATGGTAAAGATGGACAAGTACCAGTAATGAATTGATTAAGGTTTCtaagaaaaacatttaaatgcaAAACTTGATCATATTATTATCAGCAAACGAGGGAGTGGGACATGGATGTGTATGTGTAAAGAGATTGAAGTAACAGGCCAAGTGTTTTGTTGAAACTTTGAGTAAAGCCTTCATTTAATTTTGCAATCTCTGCTTGTATTGAGATACATTGCCAGTTAGAAATCTGTTGAACTTGTAAACATGGGCTGCAGGTAAACTACACAACAAGCCCACCCATGCAGTCCATTTGAGCAGAGCTTAAGTGagtgtagttctagatctcatcTTCAACCATACTCCTCTGCTAGCCATATTGTAAGCTAGCGTGACACTACTAAGCATGAAGCCAAACGGCCCTTAGTTAGCGGTAACCCAAGTCTTTGAACCACAATAGGGCAGTAATCACTTAGCACTTTGGCTCCAAACCTGCGGTCCGTTCCGAAGCAGCGTTCCCGCCTGTTGAAGTGAGACTTCAGAGAAGGTCCCTGGCCAACCAGATGGGAGCTTAAGGAATCATTGTTAAGCCAACGCTAGTGCAGAACACAGAGCTCCGCACAAATCCCAGCCCCAAATGACTGCGTTGGAAAAATCCTTACAAGACTGCAAATGTAAAACAGCCCGAGTGGGGCGGGCGAGGAGCCACATTGTGAAGTCAAGCTGAGCTGAACTGAAGCAGGGACGACTGGGTAACATTCAGCCCGGCCTGTCTGACCTTGATAAGTAGGGATGGGTAATAATAGAACAATATGGTGGGTCTATTACCTAGCAGACCCACATTATCTCTTCATTATTACATGTTTTTTCTCCATATAACTTCTTTGAATTTTTTTTCTCCCAAACATGATGAAATAAATATTTGAATGCCTCCCATTGTTGCTTAGCGTTATGTAAAACAAATAAACAGTCAACAGAGTACCTTTGCGGATGTATTGCACTGGTAATAATGTTAATGGTTATTACCTTGGCTATCTTGGATTCAGTCTGAATTTAACTTCCGTCTATCCTCCACTAGCACTTCTTGTCATTGGTGATCTAAGACACATAGGCTCACATCAATCATtacgggcggcaggtagcctagcaggttagagcgttgggcccacagaaatataaattatatttctaTTGTTGGGCCAGTCACCAAAAGGTCGCTAGTTCGAATCCTCTAGCCCGACAAGGTGAAACGTCtttcgatgtgcccttgagcaaggcacttaaccctaattgctccagggtcgccgCAGATAATGGAAAATCCTGGCCATGACCCCACTCACCGAGGGTGTCTCGGGGAGaggtgggatatgcaaaaaaacacatttccaattcacagtTGTACATTTGTGTAATAGGACaaataagcacccaccaaattattattattaaaaaccAATCAAGCTATCAACGACATTTTTAAACATTAACAACTACACCCACCtaaatggcatcaaaccatgaaCATTGACTGGGTTAGTTAGTTATCTGTCAAGTGAGATAATTTGTGTGTATGTCATatgtcagtgtatgtgtgtgtatgtgtgtcagggCAGCTGGCtggacagtacagtatgtaaatgAATGGGTGAGGTACAACATCCCAGGGCATACATACATACCGGTACTGTAGCCCTCTGCTTTCTCACACACAGCAATCATTAGGGTCCTGAGTTATGGTTCTGCCCTGGCTCTTGTCagtgcctcctctctctctctcttccttgttctctctctctcttgccttcattctttctctcaccctcattctctttctctgtctctaggaGAACTTCCCACTCCAACAAATCAATGTTCAGAGATCTAGGGTCTTCAAACAGGATGAAATGTCTACCTTGTCAAACGGTGGGTGAGAGGTGCTTATTTTTTGTAAACAGAGATCATGTTAGTATCTTGAACATTAATTACATTTGTACTTAACATGACAGTGGCTATGCATGTATTTCCCATATGCTGTATAGGCAACTTAGGTTAAGTATACACTTTTACTGGTGTGACAAACATCCCACAATACATACACcacagataaaataaataaagataatttCCTCTCTGAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K10178 TBX4; T-box protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2180245 lncRNA downstream 392 15598426 ~ 15598691 (-) True G1906335
TU2180240 lncRNA downstream 5244 15593605 ~ 15593839 (-) True G1906330
TU2180227 lncRNA downstream 13691 15585168 ~ 15585392 (-) True G1906317
TU2180208 lncRNA downstream 28386 15570462 ~ 15570697 (-) True G1906298
TU2180118 lncRNA downstream 90195 15508275 ~ 15508888 (-) True G1906211
TU2180297 lncRNA upstream 3413 15634900 ~ 15635262 (-) True G1906387
TU2180298 lncRNA upstream 4876 15636363 ~ 15636584 (-) True G1906388
TU2180300 lncRNA upstream 6902 15638389 ~ 15638655 (-) True G1906390
TU2181801 lncRNA upstream 10275 15641762 ~ 15642032 (-) True G1907716
TU2181807 lncRNA upstream 12593 15644080 ~ 15644310 (-) True G1907722
XM_021582393.2 mRNA downstream 155911 15415537 ~ 15443172 (-) True LOC110503839
XM_036961079.1 mRNA downstream 300594 15252457 ~ 15298489 (-) False LOC110503349
XM_021582388.2 mRNA downstream 419305 15170940 ~ 15179778 (-) True LOC110503835
XM_021582387.2 mRNA downstream 419306 15170940 ~ 15179777 (-) False LOC110503835
XM_036961608.1 mRNA downstream 419307 15170940 ~ 15179776 (-) False LOC110503835
XM_021582397.2 mRNA upstream 23064 15654551 ~ 15664278 (-) False LOC110503841
XM_021582396.2 mRNA upstream 23064 15654551 ~ 15664281 (-) False LOC110503841
XM_021582398.2 mRNA upstream 23064 15654551 ~ 15664281 (-) False LOC110503841
XM_021582399.2 mRNA upstream 24263 15655750 ~ 15663835 (-) True LOC110503841
XM_036961228.1 mRNA upstream 46833 15678320 ~ 16026468 (-) False LOC110503843
TU2180125 other downstream 85990 15512359 ~ 15513093 (-) True G1906218
TU2180103 other downstream 98323 15500204 ~ 15500760 (-) True G1906198
TU2180019 other downstream 244510 15353940 ~ 15354573 (-) True G1906115
TU2179941 other downstream 341886 15256720 ~ 15257197 (-) True LOC110503349
TU2179661 other downstream 514331 15083309 ~ 15084752 (-) True G1905780
TU2181985 other upstream 405500 16036987 ~ 16044305 (-) True LOC110503846
TU2182062 other upstream 500503 16131990 ~ 16132562 (-) True G1907922
TU2182093 other upstream 527359 16158846 ~ 16161226 (-) True G1907951
TU2182802 other upstream 1646320 17277807 ~ 17278410 (-) True LOC118944080
TU2183897 other upstream 2800537 18432024 ~ 18434792 (-) False LOC110503924

Expression Profile