RNA id: XM_021582397.2


Basic Information

Item Value
RNA id XM_021582397.2
length 3750
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC110503841
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 15654551 ~ 15664281 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGATCGAGGCAGGAAGAACATGTGAGATAGTCACAGTTCTTCAGTGAACAGGGCAAGACCATTTCAACTCCGTGTCCGTGTGGAATGATTGCTTCAGCCTTCAGAGAGGCACATCTTATTTTTCTCAAAGCGACTGGTCGAGAGAAAGAAGGAAACCCCGATTCTGCTCTCAAAGCGTAGTTGCTTCACTATCTTTGACTGATATTGTTACTGCACTTCGTGGAGGTACCAGCAACGGGAGTTTACGTGTAGTATAGGCTAGTTCCTATCAATTCAGTTTTTTTCTGCTAATAACCGTCTATAACCCGTCTATTCATAGCCTATCTGGCTCAGTATTCGACATTACTTCTGTATACTTCTCTTACAGAAATAACAATACATTATTCTGGAAATTGTCCTACCGTTTTTGCCGAGGGGGGAGAATCGCACTGTATATCATAATTTCACTTCGATATTTTGGATGCACCGATGAGAGATCCAGTTTTCACAGGGACTGCCATGGCTTATCACCCTTTCCACGCTCACCGGCCGACCGACTTCTCCATGTCAGCTTTCCTAGCGGCCGCGCAGCCTTCCTTCTTCCCGACGCTCACTCTGCCTCACGCGGCTCTTACTAAGCCCATGTCGGACCACCTCGTTGGAGCCGCGGAGGCAGGGCTCCACCCGGCTCTCAGCCACCACCACCAGGCGGCTCATCTCCGCAGCCTGAAGAGCCTGGAGCccgaggaagaggtggaggacgACCCTAAAGTCACACTGGAGGCCAAGGACCTATGGGACCAGTTTCACAAAATAGGAACAGAGATGGTTATTACCAAATCTGGAAGGAGAATGTTTCCTCCGTTTAAAGTCAGAATAAATGGGCTTGATAAAAAAGCCAAGTATATTCTATTGATGGATATAGTTGCTGCCGACGACTGCCGCTACAAGTTCCACAATTCTCGCTGGATGGTAGCGGGAAAGGCCGATCCGGAGATGCCCAAAAGAATGTACATTCACCCGGATAGCCCGGCTACGGGAGAGCAGTGGATGGCCAAGCCTGTTGCTTTTCATAAACTGAAGCTGACCAACAATATATCGGACAAGCATGGATTTACGATTCTTAATTCCATGCACAAATACCAGCCCAGGTTTCATATCGTGAGGGCCAACGACATCCTGAAGCTCCCCTACAGCACGTTTAGGACATACGTGTTCCCAGAGACAGACTTCATCGCTGTCACAGCTTATCAAAACGACAAGATAACACAGCTGAAGATTGATAATAACCCTTTTGCCAAAGGATTCAGAGACACCGGAAATGGAAGAAGAGAGAAAAGGGAACCGTTCAACTCTAGGAAACAGTTGACCCTTCCCTCTCTGCGGATGTATGAAGACCAATGCAAAGCAGACCGAGACGGGGGCGACTCTGATGCCTCCTCTAGTGAACCAACAACCGGCAGAGATGGTGCACACTCTCCAATCGGACCTGGATCCAGCCCGCTTAGGTTCAGTCGAATCAGCCCAGATGATAAAGCCTGTACTGACAGTGAGCAAGAACTTGATCATCGGGATGAGCGTTGTACCGCATCGAACAGCCCTGAACCGGAGCCGCCCTCTCCCTTCAGGTGCGAGGAGCGGGTTAAGGAAAAGCCGAGTCTGGAAAAGAAAGACGACTTTCCGGACTCAAGAAAGTCGAGCGACTCCATATTCAGTATTAGGAACATTGAGAAAGGAGACAAAACGGAGAACAGGCACAGGAAAGACACTACAGATTCTTCAAAAAAGGACACCGCAGACAGCGGCGGGATAAGCGCAACCAAAGAAAGTTTCTCCCCGCTCATGGTTCAAACAGAGAGCCCCTCACACTTCAGCGCGAGCCACCTGCAGAGTCTGGCCCTGTCTGGCTTGCACAGCCAGCAGTTTTTTAATCCAATGAACGCCGGACAAATGCTATTTCACCCTGGACAGTTCGCTATGGGCCCAGGTGCGTTTTCTGCCATGAGCATGGGACATCTATTGGCCTCGGTATCCGGGGCAAGTGGTATGGAAAACGGCAGCCTCTCCGCACAGGGCACCGGGGGCGCGCCGAACCCTTTCCCCTTCCATCTATCGCAGCACATGCTCGCCTCTCAGGGCATTTCCATGCCGACCTTTGGAGGCCTGTTCCCGTACCCGTACACCTACATGGCTGCCGCTGCAGCCGCGGCCTCCGCCATGCCCGCTAGCACTACAGCCAGTTCGCTCTCGAGAAATCCCTTCCTCACCAGCTCCCGCCCCCGGCTCCGGTTCAACCCTTATCAGCTCCCCGTGTCTATGGCTCAAAGCACAAGTCTATTCACCACCGGCCTGCCAGGCGGCCTAAACCCCAGCTCCGAGTCGTCCAAATCGGGCAGCAGGGAGACGAGTCCCGTGCCTGAGCTCCACAACCACAAAGCGGGGTCGAGTCATAGGACCAGCTCCCCCAAATCGATGAAGGACTCTATCAATGAGCTCCAAAACATCCAGAGACTAGTGAGCGGCctggagagccagagagagacgtACCCCCCGAGAGACTCTCCTAAGTGATCTCACTCAGAGGACTTTATGAGACATTTTGTACAGCACATTATGCGAGGAAATGTCAATACAGGCCTACCTTTTCGCGCGCCTGGACTGAGAAAAGAGGcagggaatgaaggagagagaaccAGCGTCGTCACTTACTGTTTCTGTGTGGGGTACGCTTTCAATATTATAGGAAACTGAAGCATCGAAATAATTTGAAAACCAAAAGTGGGCACTGAATTTTTAGGCGTCTGGCTAAAACTTGAGCACACTACGAGGATACCTCAAGGAGGAAAACCTACTAACAACATTCTTCATGTAGAGCATATTGACGTTAAACGACAGTGGCAACGTCGTGTCATTGTTTTTAAGGACTGAAGAGAGAACAGTTTCAAACTATAATCAATAGACGTGCTTTTTTTAATGATGAGAGCACTACAGCAGCATAAGTACTGAATGAACACTGGTGTGCGTTTTGCCCGCATTATGGAGAAGGTGCAACCTGTAAAACGACAGGAAAACAAGCTACATCCCAAAAGTTTTTAAAACATAGGCTATTATTTCAAAAGGGATGCATAAAATGAACGTTCCGTGAAAAATAATTGATAGAAGAACGCTTAGGCCTATCGTTTCTGCCAGATGTTTTTGTTTGAATTATttatgtaataaaataaaataaattctgTAAATAAGCTATAAAGGAATCCAAGAATATGCAATTGGTATTAATTTATTTAAGACTGTACATTGACGTGTATATAATATTTAGAGTTTAACTCGTGGCTTTTGattcttttttattttacatgAACGTATTCTGAAAATGAAAGCTATTAGGCGCTTGTTGGTTTGAACCAGAACGTTTTTATCTGTAATGCATAGCTGATTATCTGCCTGTGACACATGAAGGAAACTAACATGTGTGCCATGTTTATCTCTGTCTGCAAAAACTAATATcagcaaagagagaaagagagatagatagagagaaagcTGCCTATTTGTCACATTACCTGACTATTATCTGCAGGAGAGGCAGAGATGTAGGAAAACCTCAGGTCATTTCACTCCAACACAGGAGAGGATGATAACAGTTCTCTTTAAATGGGGCATAATgcatatctatctatatatataaatatatttaaaattgaAAGCGTATCTCGCTTATGCTGGTTGTGATTTTTTGTTGAATTATCTCacaatttcaataaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2181811 lncRNA downstream 5651 15648676 ~ 15648900 (-) True G1907726
TU2181807 lncRNA downstream 10241 15644080 ~ 15644310 (-) True G1907722
TU2181801 lncRNA downstream 12519 15641762 ~ 15642032 (-) True G1907716
TU2180300 lncRNA downstream 15896 15638389 ~ 15638655 (-) True G1906390
TU2180298 lncRNA downstream 17967 15636363 ~ 15636584 (-) True G1906388
TU2181823 lncRNA upstream 1117 15665395 ~ 15666976 (-) True G1907734
TU2181797 lncRNA upstream 14406 15678684 ~ 15744822 (-) True LOC110503843
TU2181865 lncRNA upstream 81272 15745550 ~ 15745840 (-) True G1907773
TU2181897 lncRNA upstream 161787 15826065 ~ 15826300 (-) True G1907795
TU2181917 lncRNA upstream 193531 15857809 ~ 15858786 (-) True G1907806
XM_036962006.1 mRNA downstream 23064 15599083 ~ 15631487 (-) True LOC110503840
XM_021582394.2 mRNA downstream 25376 15599083 ~ 15629175 (-) False LOC110503840
XM_021582393.2 mRNA downstream 211379 15415537 ~ 15443172 (-) True LOC110503839
XM_036961079.1 mRNA downstream 356062 15252457 ~ 15298489 (-) False LOC110503349
XM_021582388.2 mRNA downstream 474773 15170940 ~ 15179778 (-) True LOC110503835
XM_036961228.1 mRNA upstream 14042 15678320 ~ 16026468 (-) False LOC110503843
XM_021582402.2 mRNA upstream 14042 15678320 ~ 16028673 (-) False LOC110503843
XM_021582400.2 mRNA upstream 14042 15678320 ~ 16028674 (-) False LOC110503843
XM_036961227.1 mRNA upstream 14042 15678320 ~ 16028674 (-) False LOC110503843
XM_036961229.1 mRNA upstream 14042 15678320 ~ 16028674 (-) False LOC110503843
TU2180125 other downstream 141458 15512359 ~ 15513093 (-) True G1906218
TU2180103 other downstream 153791 15500204 ~ 15500760 (-) True G1906198
TU2180019 other downstream 299978 15353940 ~ 15354573 (-) True G1906115
TU2179941 other downstream 397354 15256720 ~ 15257197 (-) True LOC110503349
TU2179661 other downstream 569799 15083309 ~ 15084752 (-) True G1905780
TU2181985 other upstream 372709 16036987 ~ 16044305 (-) True LOC110503846
TU2182062 other upstream 467712 16131990 ~ 16132562 (-) True G1907922
TU2182093 other upstream 494568 16158846 ~ 16161226 (-) True G1907951
TU2182802 other upstream 1613529 17277807 ~ 17278410 (-) True LOC118944080
TU2183897 other upstream 2767746 18432024 ~ 18434792 (-) False LOC110503924

Expression Profile