RNA id: XM_021582400.2


Basic Information

Item Value
RNA id XM_021582400.2
length 4932
RNA type mRNA
GC content 0.51
exon number 25
gene id LOC110503843
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 15678320 ~ 16028674 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTCTTTTCGTTTTTCCTACGTAGACTTTCCCACATGAACAGGTGATGAGAGAGATTACTCCCTTTTGTCTTGCATGAGCTGATACCCCCTCCCAGGGACTTTTCGACCCGTATGTTTTTGTAGTGCTGTTGCACTGTGCGCATGCGCCATATTTGTATGTCCCGTTTGGAATGGGTGTCAAGAGTGTTTGAGTGGGCTCAGGTCAGATCTCACTAAACTATCCCCAATATTGCGACCACGCTTACAGACCACAATATACGGTATTATTGTTCACTCTGATTGGTCGAGGACCTACAACACCGCCTTTGTCGTACCCTGATTGGCTTGATGAATGCACAGGAATGCTGCCATTGGTCTCAACACCTCTACGGTTTTCCCACTGTTTTGTGGCATTTGCTAAGGAGCTCCGTTGAACTAacgaagctaacgttagctagacaaCAACACTAGACTAGGATAAAGACTTGGAGCTGAAATGGCATCAGACTCCCCGCGCAGACCAAGCCGCTGTGCTGGAGGGGTTGTGGTACGAGCACAAGCTGCCACTGAGCAGTCGTATATGGAGAGTGTTGTGACCTTCCTCCAAGATGTGGTCCCTCAGGCATACACAGGTGCACCCCCAACTGATGAAAAAGAGAAAATAGTTTGGGTCAGATTTGAGAAAGCTGACCTCAATGATACGTCCCGCTCCCCAGAGTTCCTGGAGATGCACAGTGGCAGCAGTgaccctcctctctgcctcatgATTGGTTACGCCGACGGGATGCAAATCTGGAGCATATCTCTGGGTGGGGAGGCCCAGGAGCTTTTCTCTGTGCGCCACGGACCTGTGAGAGCTGCCCACATCCTGCCGGCGCCCCATATCAGTCCGCTGATGATTGATGGTTTTGCGGACAAGaggcctctcctgggggtgtgcAAGAGCACTGGGTCCTTGGGGACGAGCCCTCCATACTGCTGTGTGGACCTGTactcactgaggacaggggagatggtCAAGTCCATCCAGTTCAAGACGCCCATCTATGACCTGCACTGCAACAAGGAGATTCTAGTTGTCGCCCTGCAGGAGAAGATTGCTGCATTCGACAGCTGTACCTTCAACAAAAAGTTCTTTGTTACAAGCTGCTTTCCCTGTCCGGGCCCCAACCTAAACCCCATAGCACTGGGAGGACGCTGGCTAGCCTACGCTGAGAAcaagtTGATCCGGTGTCACCAGTCTCGAGGCGGTGCCTGCGGGGACAATGCCCAGTCTTACACAGCTACAGTCATCAGCGCTGCTAAAACCCTAAAGACTGGTCTCACCATGGTGGGGAAGGTGGTGACCCAGCTAGCTGGTACTCTACCCACTGGCGCCCCCGACGAGGAGGGTGCTACCCCCCACAGCACCACCCGCCGAAGCCCCCATGCCCCCGGAGTAATCACCATCATTGACACACACAACGTCGGAGAGGGACAGGTCCTGGTGAGTGAGGACTCAGATGGAGAGGGAGTGGTGGCCCACTTCCCAGCCCATGACAAACCCATATCCTGCATGGCATTCAACCCCAGCGGTATGCTGCTGGTGACTGCAGACACCCTGGGCCATGACTTCCATGTGTTCCATGTCCTCACACACCCCTGGGCCTCCAACCAGTCTGCTGTCCACCACCTCTACACACTGCACCGCGGAGAGACTGAGGCCAAGGTCCAGGACATCTGTTTCAGCCAGGACAGTCGCTGGGTGGTGATCAGCACACTGCGTGGCACCTCCCACGTCTTTCCCATCAACCCCTATGGTGGCGCGCCCTGCGCCCGCACACACATGTCCCCCCGCGTGGTCAACCGCATGTCTCGCTTCCAGAAGAGTGCAGGGCTTGAGGAGATAGAGAATGAACTGAACAGCAAGCAGGCTGGAGGAGGGAGATGCAGCCCCATCCCCGGGCTCTCCAGCAGCCCCTCGGGGTCCCCACTACACGctAAACTCACCAGTCAGGAGTCGTACAACAACTTCACCAACAACAACATGGGTAACCCTCGTCTGTCCCCTCTGCCCAGCCTCACCATAGTGCTGCCCCTGGCACAGATCAAACAGCCCATGACCCTGGGCACCATGACCAAGCGCTCCGGACCTTACCTCTTTGGGGCAGGATGTTTTGCCATTAAAACTCCATGcaaagccaaGCCTCCCCCCCAGATCTCCCCCAGTAAGTCCAGTGGAGGAGAGTTCTGTGTGGCTGCTGTCTTTGCTGCCTCACGCTCCTGGTACATGACCAACCccaacatgaagagagagaaagACCAGTCCAGCCGGTCAGTGGTGGAGTCCCTCTACATCCTCAGTTGCTATGGCACCCTAGTGGAGCATGTCCTGGAGCCTCGGCCAATCAGCACAGCCCAGAAGATCAGCGATGACACACCCCTGGAGCTCAACACATGTCCACGGGCCTGCTGGAGCCTGGCCAGGACTCCACTGTGGAATGAGCTGCAGCCTCCCTTTCTCTCCAACCACCCTCTGGTGCTGGCCTCTGACCTGGTGCAATATTACCAATACCTCCTGGCTGGATTGGTGCCCCCTGGAAGCCCGGGTCCTGTCACGCGCCACGAGTCTTACGACAGCCTGACGTCAGACCACAGCGGACAGGAGGACGAGGAGTGGCTCTCACAGGTGGAGATAGTCACTCACACAGGGCCTCACCGTCGGCTGTGGATGGGTCCTCAGTTCCAGTTTAAGACCATCCACCCATCTGGTCAGACTAcggtcatctcctcctcctcctccgtgctgCAGTCCCAGGGCCCCAGCGACATTCAACAGCCTCTGTTGGACTTCCACACTGATGACCTGGACCTACACAGTCTCAGgatcCAGCCGGTGCGTTCTGAGCCGGTCAGCATGCCTGGTTCCTCTCGGCTGGTGGCTGAACGGAGGGGACACGGGACGGTCATTGATACAGGATCAGGGACGTTTGACCGCAGTGTGACTCTGCTGGAGGTGTGTGGCAGCTGGCCAGAGAGCTTTGGCCTGCGTCACATGAGCTCTGTGGAGTCCACCGaggaggggctgagagagaggctggcAGACGCCATGTCAGAGTCACCATCCAGAGACATAGTGGGCTCGGCTACCGAGCTCCAGAGGGAGGGCAGCATTGAGACTCTCAGCAACAGCTCTGGTTCCACCAGCGGCTCCATCCCCCGTAACTTTGAGGGCTACCGCTCTCCACTGCCCACCAACGAGAGCCAGCCCCTCAGCCTCTTCCCCTCCGGATTCCCCTAGAGGAGACCAGGAGACAGCCTGCCTATCACCCTACAAGACCTGGGGTCAAATACTATTTTAAGTCTTTCAAATGCTTTGagtgtttgctttagtctgcctggggTGCCTGATGGGAGGGGACTACATTTTACaactattctattggttctaGACAAGCTCAATAAAgcccagataaagtatttgaacccaggtctgctaccTACCATCCATCCTACCGCTTCACACAGCACAGCCAGACAGTCCTGATGTCTTCCGGTCTCTCGCCATGTTGATGTTCATTAGGATGTTATTGTGAGCAATGGTTCCCTTTtcatgttccctcctctctctttccaaaTCCAGGAACTGTCCAGTGTTACTCCCACCtaccgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcacatggcGTGTGTTTCATTTTGGGTGTGTGAAATAGCTGAAGTTTGTTATTTAGCTAGACATGTTTTTATGGAGTTGATTAACTACGTGTCACTTTGACTTTTTCACAAGCTTGTAAATGGTGATGGACCTAATGTAGCTGTAGTTGTTTTACTTCTGAAGATAACGACCTAGCTCAGCATGCGCGCTGTAATGTATATTAGCTTTGCTTATTAAGACCAAATCACTTCCATGTATGCTTTTCTCTTCATTTGGTAACATTGAGGGTTTTGGTGGGTATCTTTTTAGTTTGTTGAGTCGAGTGTCTTCTGATGATTTCATCTTGCTTTGATTATGATTTTATTTTTCTGCAACAAAAAACAGGTTTGTGCTTTAACAAAAGAAAAGGCTTATTCCTTActtgcgtgcacacacacacacacacctcaaacacaccccaaacacaaacacatgcttGTACGCTGAATAACTACTTTGCCAGCTTGCTTTTCTTAGTGAATGGGTCATTGCTAGACTTGACCAGACCACATGGGACTTGAAATGAAGTGTGATCTGATGCACTAGTGAGAACAGAAAGATAGACTCACCTTTGAGACTTAAAACAGGTTCTAAATATTTGGTCACTgattttgtatttagtgtttgtCAACATTTTAATTTTATAACACAATCCTAGTCCTTTGTCTGGGGAATGGATGTCTGGTTGACTACACGGGTCTGTTCAGAAAAATGCGACGTTACAGGACTTTCAggtagaaatacattttataGAACATgtgactcctctctgtcctgtaggaaAAGGAGTCATTACAGATCTATATATTACATATTTATCTGCAATGTTCGGGAATGTTTCACCCTACTGAACACAGCCATGTTCCCGTAATTCTGCATGTTGAATGAGTCAATGGCTACTGCTGCTTGGTCACTGGACAATGTAACATAAAAGAGGCATGATGAATTTATTCCTTTTAATACAGAACACATGCTCATTAATACATTTTTACTAATATTGGTTTTGTAAAATACCAAATCGTTATTTGCTATACATTCATGTTAATGAAATGTATTGATGTGTTATTATCACCCCTGGATACTCAATGATTTCATATATGCTAAATAAATATTACACCTGCAGAGTCATTGTTTCAATCACGTGAACAAAAGTTATCAGCAAGTGCTTTTGTAAATGTTAAGTGACTTCTCGTTTAatttaatgaaaataaataaaccaCACCAAAGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2181823 lncRNA downstream 11344 15665395 ~ 15666976 (-) True G1907734
TU2181811 lncRNA downstream 29420 15648676 ~ 15648900 (-) True G1907726
TU2181807 lncRNA downstream 34010 15644080 ~ 15644310 (-) True G1907722
TU2181801 lncRNA downstream 36288 15641762 ~ 15642032 (-) True G1907716
TU2180300 lncRNA downstream 39665 15638389 ~ 15638655 (-) True G1906390
TU2182075 lncRNA upstream 75829 16104503 ~ 16104867 (-) True G1907934
TU2182080 lncRNA upstream 83732 16112406 ~ 16112761 (-) True G1907939
TU2182081 lncRNA upstream 86375 16115049 ~ 16115427 (-) True G1907940
TU2182054 lncRNA upstream 102138 16130812 ~ 16131247 (-) False G1907914
TU2182053 lncRNA upstream 102297 16130971 ~ 16131247 (-) True G1907914
XM_021582396.2 mRNA downstream 14039 15654551 ~ 15664281 (-) False LOC110503841
XM_021582398.2 mRNA downstream 14039 15654551 ~ 15664281 (-) False LOC110503841
XM_021582397.2 mRNA downstream 14042 15654551 ~ 15664278 (-) False LOC110503841
XM_021582399.2 mRNA downstream 14485 15655750 ~ 15663835 (-) True LOC110503841
XM_036962006.1 mRNA downstream 46833 15599083 ~ 15631487 (-) True LOC110503840
XM_021582405.2 mRNA upstream 9194 16037868 ~ 16043576 (-) False LOC110503846
XM_036962005.1 mRNA upstream 9194 16037868 ~ 16044740 (-) False LOC110503846
XM_021582410.2 mRNA upstream 104490 16133164 ~ 16138513 (-) True slc46a1
XM_036961985.1 mRNA upstream 169372 16198046 ~ 16224497 (-) True LOC110503852
XM_021582413.2 mRNA upstream 198897 16227571 ~ 16232374 (-) False LOC110503854
TU2180125 other downstream 165227 15512359 ~ 15513093 (-) True G1906218
TU2180103 other downstream 177560 15500204 ~ 15500760 (-) True G1906198
TU2180019 other downstream 323747 15353940 ~ 15354573 (-) True G1906115
TU2179941 other downstream 421123 15256720 ~ 15257197 (-) True LOC110503349
TU2179661 other downstream 593568 15083309 ~ 15084752 (-) True G1905780
TU2181985 other upstream 8313 16036987 ~ 16044305 (-) True LOC110503846
TU2182062 other upstream 103316 16131990 ~ 16132562 (-) True G1907922
TU2182093 other upstream 130172 16158846 ~ 16161226 (-) True G1907951
TU2182802 other upstream 1249133 17277807 ~ 17278410 (-) True LOC118944080
TU2183897 other upstream 2403350 18432024 ~ 18434792 (-) False LOC110503924

Expression Profile