RNA id: XM_036961985.1


Basic Information

Item Value
RNA id XM_036961985.1
length 1668
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC110503852
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 16198046 ~ 16224497 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCATCACCACCGCACGCGCGCTCCAAGCGCAAGGGCTATTCAGCCGCCGCACACAAACAGTCACGGACCAACGGGTTTAAAGAACTGAGGATTTAAATTAAATACCGAGTGTGAGAGACGTTGAGCCTTGggtgagggagggaaagagactgATTTGTATCTTCCCCAGATCGGGAGGGGGAGGAGGCACGGAGAATGAGCTATTATTGTACCAGCACAGAGGCTGTGTGTAATAGCCAGGACGCACCTAACGCCAGTGCGAGGAAAGCAGCTACTAATAATACGAACCGTGGCAGCGAAGGTCTcgagagcagcagcagcactagttCACGGCAGTCGCAACCCCAACCGCTCGTGGCCATGAAAGTGAAGAAAGGCTGCAACTCGACAGATGCTGGGGTCCCGGTTACAAGTGAGGACGAGTTGCTAAGAAACCCCGTAATATCGCCTGAGGATGTACTTGGGTTACAAAAGATCACCGAAAACTACCTATGTTCCCCAGAGGAGAACGTTCACATGATCGACTTCACACGGTTCAAGATCCGAGACATGGAGACAGGGACGGTGCTGTTTGAGATCACTAAACCCCCTGTACCAGCAGGCGAAAAGAAGGATTTTGACCCCAACGGAGGCCGCTTCGTCCGTTACCAGTTCACCCCTGCCTTCCTGCAGTTGCGCCAGGTCGGCGCCACTGTGGAGTTCACAGTGGGAGACATGCCCATCAACAACTTCAGGATGATTGAGAGGCACTACTTCAGAGAGCAGCTCCTCAAAAGCTTTGATTTTGAGTTTGGTTTCTGTATGCCCAGCAGCAAGAACACCTGTGAACACATCTACGAGTTCCCCCCTCTGTCAGAGGACATCAtgCGCGAGATGATCCTGCACCCATACAAAACGCAGTCCGACAGCTTCTACTTTGTGGACAACAAGCTGGTGATGCACAACAAGGCAGACTACTCCTACAGTGGGAGTCCGTAGGAGCACAGGACTTCCCTAGacacctagacccactccaactcTAACCCACCCCACCATAGGaccatggacagacagacagacagacagacagacagacagacagacagacagacgacaaaCGGAGAGACGTATGGACGGACTGACAGGTCACAAGCAGCAGGACTGATGGACAGCCTCGCACTCTCAGCAGCTTTATTTTCTCCAATCAGAATTCCTCCGTTGCTTGTCATCCCCTCAATTGCAATCCCCTACTCCAGTCTCTTTCAATGACCTCTCAACTTTCTGTGTCTGATAGAGAGTGTTATAGATGTGTACACAGTCtagcatacataaacacacacagaccttcGCTATGGGACACGTCTGATGTGGCCTGATCTAGACAAATTAAAAGCACAACCAGTAGAGTATATAAGGGCCAGTAACAATGAGTGAGATTGAATGTCTAGTCAGTGAGTTCTCAGTCAGTCAGctaaagagaaaaagagaaagggagagagagataagaagagacagaaaaaatgaagagagcgagaaagagagatagaatgTCTGCTTTTCTGCACTTCATCTCATTgacatttacagtaccagtcaaaggtttggacacacctactcattcaagggttttacatgactattttctacattgtagaataatagtgaagacatcaaaactatgaaatagc

Function

GO:

id name namespace
GO:0007601 visual perception biological_process
GO:0070121 Kupffer's vesicle development biological_process

KEGG:

id description
K23539 UNC119; protein unc-119

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2182104 lncRNA downstream 12558 16185035 ~ 16185488 (-) True G1907962
TU2182054 lncRNA downstream 66799 16130812 ~ 16131247 (-) False G1907914
TU2182053 lncRNA downstream 66799 16130971 ~ 16131247 (-) True G1907914
TU2182081 lncRNA downstream 82619 16115049 ~ 16115427 (-) True G1907940
TU2182080 lncRNA downstream 85285 16112406 ~ 16112761 (-) True G1907939
TU2182147 lncRNA upstream 38077 16262574 ~ 16264753 (-) True G1908004
TU2182213 lncRNA upstream 103212 16327709 ~ 16328139 (-) True G1908067
TU2182174 lncRNA upstream 236923 16461420 ~ 16476960 (-) True G1908029
TU2182360 lncRNA upstream 393475 16617972 ~ 16622138 (-) True G1908202
TU2182394 lncRNA upstream 411140 16635637 ~ 16641190 (-) True G1908230
XM_021582410.2 mRNA downstream 59533 16133164 ~ 16138513 (-) True slc46a1
XM_036962005.1 mRNA downstream 153306 16037868 ~ 16044740 (-) False LOC110503846
XM_021582405.2 mRNA downstream 154470 16037868 ~ 16043576 (-) False LOC110503846
XM_036961229.1 mRNA downstream 169372 15678320 ~ 16028674 (-) False LOC110503843
XM_021582413.2 mRNA upstream 3074 16227571 ~ 16232374 (-) False LOC110503854
XM_036962007.1 mRNA upstream 3074 16227571 ~ 16234629 (-) True LOC110503854
XM_021582421.2 mRNA upstream 168779 16393276 ~ 16407374 (-) True LOC110503859
XM_021582422.2 mRNA upstream 189188 16413685 ~ 16422281 (-) True aipl1
XM_021582423.2 mRNA upstream 281515 16506012 ~ 16515306 (-) True abhd15a
TU2182093 other downstream 36820 16158846 ~ 16161226 (-) True G1907951
TU2182062 other downstream 65484 16131990 ~ 16132562 (-) True G1907922
TU2181985 other downstream 153741 16036987 ~ 16044305 (-) True LOC110503846
TU2180125 other downstream 684953 15512359 ~ 15513093 (-) True G1906218
TU2180103 other downstream 697286 15500204 ~ 15500760 (-) True G1906198
TU2182802 other upstream 1053310 17277807 ~ 17278410 (-) True LOC118944080
TU2183897 other upstream 2207527 18432024 ~ 18434792 (-) False LOC110503924
TU2183901 other upstream 2207527 18432024 ~ 18434792 (-) True LOC110503924
TU2184703 other upstream 2743565 18968062 ~ 18973230 (-) False LOC110503944
TU2184704 other upstream 2743565 18968062 ~ 18973230 (-) True LOC110503944

Expression Profile