RNA id: XM_021582413.2


Basic Information

Item Value
RNA id XM_021582413.2
length 1953
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC110503854
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 16227571 ~ 16234629 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgacccaaTAGTCAGCGTGGggatgtaaatgtatatatatccCTACTCTGGGGGCCTGATTCCAACTCTTAGGCTTATCCATCTGGATGTCCATTCCTCCCTTGTACCTGACAAGCAGCCACTTGATTCGACCATGTCCCACTCCGGAGCCCAGGGCAGCATTGGGAGCCACCCAGCCATGGGGCTGCGTGCCCACAAAATGTACCTGTTTGAGTTTGAGAACTTCCAGGGTCGTATGATGGAGTGCATCACTGAGTGCCGTAACCTGTGTGAGAAGGGCTTCGAGAAGATCGGCTCCATCAGGGTGGAGTGTGGACCCTGGGTGGGCTATGAGCAGCAGAACCTGAGTGGAGAGATGTTCATGCTGGAGAAGGGAGAGTACCCCCGCTGGGATACCTGGAGCAACAGCTATAGGTGTGACCGCTTCATGTCCGTCAGGCCTGTTCGCATGGACACCCAGGACCACAAGATATGCCTATTTGAGTGTAATAACTTTGAGGGCCGTAAGATGGAAGTTTGTGATGAGGATATCCCGAGTCTGTGGTCCTATGGCTTCCAGGACCGTGTGGCCAGCATCCAGGTCACTGGTGGAACTTGGGTTGGCTATCAGTACCCCGGTTACCGTGGCTACCAGTACGTGTTCGAGTGCGCCGTCTTCAAGCATTGGAACGAGTGGGGCGCCCACCATCCCCAGATCCAGTCCATCCGTAGAGTGAGGGATATGCAGACACATCGCAGAGGCTGCTTTGAGTGGACCGTCTAGATGGGGCCAGGCAGGCGACGGGTTGTGGGCCAGCAGGACAGAGGGGAAGGGGCCAGGCAGGCGACGGGTTGTGGGCCAgcaagacagagaggaaggggtcTGGCTAGCCCTGGAGCTAACCATTCCAGAGTCTAGAGTTCCATCTTGGATCTCCACACAGCCAACATAAGCTAACAGCTAATAACATAACATCACTGGCTCCACCTCAATCACTTACTAGTTGTAACATTCagggtgtgtgtactgtattgcACAATCGCTGAATGAAGACATTGCCACCTACTGGGAAAAGGTTGTTACTGCAGTTCACCTGCTGCTGACTTCCACAATGCCTGAATATAATAATACTGGTGAAACTGAAAGCTGTACTCTCTGTTCCAAGACCTGATAGAATTATAGCGTGAGAAGATTTAGGATGGGGATTTTAATGGGGTAAAGGGAATTAGTTAACAAAGATTTTAAGAAGTTATATAGCTTCATTAGTTTGTGTTCACTAGTTTGTTTCCATATCTGCAAACCCATTGATTTTATACATCTTACTTACTTGTTTCTTAGCTATATACCAAATGATGCCGAATAAGCCTGTTCATTACAATGCTCTACCCTCCTGCAATCTGTGAATGATTTTAGAGAGTAGAGATACTAGACACTCCACTCAAGCCAGTCCCTAAACTACCATGGACAGCTGCCAGCTCTGTGCTGTGTCCGTGCCCTACAGTGAGCTCAATCATCCACAGGGAAACACTGTTTACCAATGTACTCTCCCCATGGCCACCATCTAGTCTAGGGATTCCACCTCAACCATAATTTCCCTAATGACATTCTACCTTCAAGGCTTCAAAGCTATGCCCATGACCCACTCGGTTGAGGGCAGTGAAGCTTTCCAATGACCCACTCTATCTAGGGCAGTGACGCTATGCTCACGACCCACTCAGTCTAGGGTAACAGACTCAGTTTAAGGCAGTGAGGCTGTCTGAAGGAGGAAGTGAGCTAGGGGGTATGATTGGGAGACAGGCTGCTGTAGACTACCTGGTAGTGTTTTTCTAGACATGCCAACCTTTTGGGAGACCCCTCCCCCTCTTAATGATGGGGTTGCAGAGGAATGTtgttatatacactatatatttcTCAGGGATGCTGGCATCTGGAAATAAACTTTCCAATAAAAAAAACGAAGTGAAATTGATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2182104 lncRNA downstream 42083 16185035 ~ 16185488 (-) True G1907962
TU2182054 lncRNA downstream 96324 16130812 ~ 16131247 (-) False G1907914
TU2182053 lncRNA downstream 96324 16130971 ~ 16131247 (-) True G1907914
TU2182081 lncRNA downstream 112144 16115049 ~ 16115427 (-) True G1907940
TU2182080 lncRNA downstream 114810 16112406 ~ 16112761 (-) True G1907939
TU2182147 lncRNA upstream 30200 16262574 ~ 16264753 (-) True G1908004
TU2182213 lncRNA upstream 95335 16327709 ~ 16328139 (-) True G1908067
TU2182174 lncRNA upstream 229046 16461420 ~ 16476960 (-) True G1908029
TU2182360 lncRNA upstream 385598 16617972 ~ 16622138 (-) True G1908202
TU2182394 lncRNA upstream 403263 16635637 ~ 16641190 (-) True G1908230
XM_036961985.1 mRNA downstream 3074 16198046 ~ 16224497 (-) True LOC110503852
XM_021582410.2 mRNA downstream 89058 16133164 ~ 16138513 (-) True slc46a1
XM_036962005.1 mRNA downstream 182831 16037868 ~ 16044740 (-) False LOC110503846
XM_021582405.2 mRNA downstream 183995 16037868 ~ 16043576 (-) False LOC110503846
XM_036961230.1 mRNA downstream 198897 15678320 ~ 16028674 (-) False LOC110503843
XM_021582421.2 mRNA upstream 160902 16393276 ~ 16407374 (-) True LOC110503859
XM_021582422.2 mRNA upstream 181311 16413685 ~ 16422281 (-) True aipl1
XM_021582423.2 mRNA upstream 273638 16506012 ~ 16515306 (-) True abhd15a
XM_021582426.2 mRNA upstream 323388 16555762 ~ 16558682 (-) False LOC110503865
XM_036961144.1 mRNA upstream 323388 16555762 ~ 16558682 (-) True LOC110503865
TU2182093 other downstream 66345 16158846 ~ 16161226 (-) True G1907951
TU2182062 other downstream 95009 16131990 ~ 16132562 (-) True G1907922
TU2181985 other downstream 183266 16036987 ~ 16044305 (-) True LOC110503846
TU2180125 other downstream 714478 15512359 ~ 15513093 (-) True G1906218
TU2180103 other downstream 726811 15500204 ~ 15500760 (-) True G1906198
TU2182802 other upstream 1045433 17277807 ~ 17278410 (-) True LOC118944080
TU2183897 other upstream 2199650 18432024 ~ 18434792 (-) False LOC110503924
TU2183901 other upstream 2199650 18432024 ~ 18434792 (-) True LOC110503924
TU2184703 other upstream 2735688 18968062 ~ 18973230 (-) False LOC110503944
TU2184704 other upstream 2735688 18968062 ~ 18973230 (-) True LOC110503944

Expression Profile