RNA id: XM_036961594.1


Basic Information

Item Value
RNA id XM_036961594.1
length 2141
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC110503875
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 16833518 ~ 16913657 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTTCACACAGAAGCTGCCATTCAGTGTTGTTGCACTTTAGAAAAGGCAGCACTGCAAGGAATAGCAGTGGAAGAAGAAGCAGAGCAGCCTCCTGCACAATTTATTATAGGGTAGGTGGGTCGCAAGCCCCTTTGTCCTGCGCAATAAAAACACGGAATACCCCAAACGGAGGACTCAAGAGTTTGGAATAGCATTCCTTCTTACTGCAATTGCGAAATGGAAAATTCGTCTTCCAACAACCGGTTTAGGACAACAATGTTCAACCACGGACCAAGACAAGGACTATGTGGGCTTTGCCACACTGCCAAACCAGGTGCACCGTAAGTCTGTCAAGAAGGGCTTTGACTTCACCCTGATGGTAGCAGGGGAGTCTGGTCTGGGCAAGtccaccctggtcaacagccTCTTCCTCACAGACCTCTACAAGGACAGGAAGCTACTCAACGCTGAGGAGCGGATCACTCAGACAGTGGAGATCACTAAACACACAGTGGACATTGAGGAGAAGGGCGTCAAGCTGAAGCTCACCATCGTAGACACCCCTGGCTTTGGAGACGCTGTCAATAACACTGAATGCTGGAAGTCAGTGGCGGACTACATTGACCAGCAGTTTGAGCAGTACTTCAGGGACGAGAGTGGACTGAACAGGAAGAACATCCAAGATAACAGAGTTCACTGCTGCCTCTACTTCATCTCTCCCTTCGGACACGGCCTGAGGCCTCTGGATGTGGAGTTTATGAAGGCCCTTCATGAGAAGGTCAACATTGTGCCAATCCTGGCCAAGgcagacacactcacacccacTGAGGTCAAGAAAAAGAAATTCAAGATCCGAGAGGAGATCCAGCAGTATGGGATTAAGATCTACCAGTTCCCAGACTGTGACTCTGATGAGGACGAGGACTTCAAACAGCAGGATCAGGAGCTCAAGgACAGTATACCGTTTGCGGTGATCGGCAGCAACACGGTGGTGGAGGCCAAAGGGAAGAGGGTCCGGGGTCGTCTTTATCCCTGGGGCATCGTGGAAGTGGAGAACTCGGCGCACTGTGACTTTGTGAAGCTGAGGAACATGTTGGTGAGGACACACATGCAGGACCTGAAGGATGTGACACGGGAGACCCACTATGAGAACTACAGGGCTCACTGCATTCAGAGCATGACCCGCATGGTGGTGAAGGAACGCAACCGCAaTAAACTGACCAGGGAGAGCGGCACAGACTTCCCCATCCCTGTGATACCAAGTACCACAGACACCGAGACGGAGAAGCTGATCCGAGAGAAAGACGAAGAGTTGCGGCGAATGCAAGAGATGCTCACAAAGATCCAGGAACAGATGCACACGCAGAAGGAGGCCTATTAACCAAGGCTACTACTAGAACCCCTTTCCCCTGTGTAAATATAGGCCCCTTCTTTCCACTACTAGGGTGGGCACCCCTAGTACCACTCTACTCTAGTCCACAAACATTGTCTGCTCCAGCTCATCCAACCCCAACTGCCACCACTCCTCATTTAGTCAATAACCCTCACTATCAGAGACTGATCCAAGACCAGGCATGAGGCATTTTACAGACAGGAGTTGGCATGGTGAGAAGTTTCTTCTTCCAACAACATGGAAGCCTTGCATCTCCACACCTGTTGTGGAAACTCTAACAGTAATAACGGGCACCCCTGTCAGGTGCCATTGCTAGAGCACAACACCGGTCCGGACAGCACAGACCTAACCACCTGCTTGTCCTTACAGGGTTATGGCCgggtcctgcctgcctgccttccacCCATAGTTTATATGTGGTCTTGTCAAAAGATAACTTTTTGCCCTCCAGTTTTGTCGCTAATGTTCCTTGATGTTTCTCCTTAGTGAACTCTAACCCCTGACATTGGTTAAGGGATAGACTGTAGAGCATGTGTTGTCCTGTCCCTCTGCTAGGTGTTTGAAAGTTTATATTGTAACAAGTTTAGATGTGTGGTCTTAACCAACCTAGACAAGGTATGGTTTGAGGGAGGTTGGCCTGccagatttgtatttttttgtcatgCACAATTTTTTCCCAAGAGCATTTTTAAAAGGTCAATACTGTAGATGGGAATCTTTTTTTTACTATTACAGGATTGCATCTATCACTTGTAATTATTTTATTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2182471 lncRNA downstream 36878 16751127 ~ 16796640 (-) True G1908301
TU2182455 lncRNA downstream 56707 16719356 ~ 16776811 (-) True G1908285
TU2182442 lncRNA downstream 71477 16758103 ~ 16762041 (-) True G1908272
TU2182438 lncRNA downstream 111979 16715166 ~ 16721539 (-) True G1908269
TU2182400 lncRNA downstream 185953 16647335 ~ 16647565 (-) True G1908235
TU2182648 lncRNA upstream 79856 16993512 ~ 16997485 (-) True LOC110503876
TU2182761 lncRNA upstream 317236 17230892 ~ 17233704 (-) True G1908551
TU2182822 lncRNA upstream 392925 17306581 ~ 17309103 (-) True G1908604
TU2182824 lncRNA upstream 396676 17310332 ~ 17314262 (-) True G1908606
TU2182944 lncRNA upstream 610800 17524456 ~ 17531758 (-) False G1908714
XM_036961143.1 mRNA downstream 242086 16559760 ~ 16591432 (-) True LOC110503864
XM_021582426.2 mRNA downstream 274836 16555762 ~ 16558682 (-) False LOC110503865
XM_036961144.1 mRNA downstream 274836 16555762 ~ 16558682 (-) True LOC110503865
XM_021582423.2 mRNA downstream 318212 16506012 ~ 16515306 (-) True abhd15a
XM_021582422.2 mRNA downstream 411237 16413685 ~ 16422281 (-) True aipl1
XR_005039323.1 mRNA upstream 7451 16921107 ~ 16993293 (-) False LOC110503880
XM_021582495.2 mRNA upstream 11006 16924662 ~ 16980563 (-) False LOC110503880
XM_036961281.1 mRNA upstream 11006 16924662 ~ 16981094 (-) False LOC110503880
XM_021582494.2 mRNA upstream 11006 16924662 ~ 16993293 (-) False LOC110503880
XM_021582496.2 mRNA upstream 11007 16924663 ~ 16950390 (-) True LOC110503880
TU2182093 other downstream 672292 16158846 ~ 16161226 (-) True G1907951
TU2182062 other downstream 700956 16131990 ~ 16132562 (-) True G1907922
TU2181985 other downstream 789213 16036987 ~ 16044305 (-) True LOC110503846
TU2180125 other downstream 1320425 15512359 ~ 15513093 (-) True G1906218
TU2180103 other downstream 1332758 15500204 ~ 15500760 (-) True G1906198
TU2182802 other upstream 364151 17277807 ~ 17278410 (-) True LOC118944080
TU2183897 other upstream 1518368 18432024 ~ 18434792 (-) False LOC110503924
TU2183901 other upstream 1518368 18432024 ~ 18434792 (-) True LOC110503924
TU2184703 other upstream 2054406 18968062 ~ 18973230 (-) False LOC110503944
TU2184704 other upstream 2054406 18968062 ~ 18973230 (-) True LOC110503944

Expression Profile