RNA id: XM_021582468.2


Basic Information

Item Value
RNA id XM_021582468.2
length 5838
RNA type mRNA
GC content 0.53
exon number 63
gene id LOC110503876
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 16993507 ~ 17087259 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACCAGAATAAAAACAGCAACACCAGACATAGGGGAGGGAAAAAAGCGAAGTGATCCATTGAACCAAAAGTCTTTGCCCTCTCTTAATTACGTAGTGGCCCATatcttttctcttttttttccacttaaaaaaaataataaaaaatcttTCTTCTGTACTTGAAGACCTCTGGTTATTGGTAATTAGCTTGAGGAGAATAAAACCAGCCGATTGTGAGAGGGGTGGTGCATTGTGGAGCGAGATGGCTAACAGAATGGTTCTATCACTCCTTCATGGTCTCTTCTACCTATCTCTGATTCAGCCCTCTCTTCAAGGAGgtgTGTATGTGCCGGCTGGTGCTGGAGTCAGACCAGGAGCAGGAGGATCTGGACCAGGTGCTGGCCTCTACCCAGGAGCTGGTGGGATACCTGCAGGAGCAGGCTACAAACCAGCTAAAACTGGTGCTGGAGGATATGGAGGACGGGGTGGTGTTGGTGCTGGAGGTCTGGTCCCTGGTGGCGGGGCTGGAGGCATAGGAGCAGGAGGCctcggaggaggagGAGTCGGTGGAAAGGGCCCCAAACCTGgtTATGGAAACCTTGGTGCTGGTGGTGTTGGGGGTGGTGGTCTTGGTGGTGGAGGATATGGAGCTGGTCCTGGAGCCACCGGTCTAGGAACAGGAAgctttggaggaggaggaggatacgCTAAGCCTGGAGCTGGTTATGGAGGAGGCTCGCCGTATGGCGGCTCGACTTATGGAGGAGGTGGTGCTGGGAGCTTCTTCCCTGGAGGTGGTCTGGGACAGAAGGCAGGACCCAAACCAGGCTATGGGGCAGGAGCTGGACTACAACCAGGCTATGGTGCAGGTGGACTACAGCCAGGCTATGGCGGTGGTGGATTACAGCCAGGTTTAGGGGGACCTGGAGGTGCAGGAACAGGAGCTGCGGTGCCTGCAggagCACCTGTTATTCCTCAGACTGGACTACCTGGAGGTGGGCTGGGACTTGGTACCGGAAAAGGAAAGGCTCCAAAAGGAGGAGTGCCAGGTGTGGGGGTGCCTGGACTttaccaaggtggccaggtgccaGGACAAGGGTTTGGTGGTCGTGGAGTGCTGCCTGGTGTGGCCACTGGGAACGGACTCAATCCCAAATCATTGCCAGGTGGAGGACAACAGGGACCAGGAGGCTCAGGTCGTGTTGGTTACGGAGGACCAATGCAGCCAGGAGTATTCCATGGATACCCACTCAAAACTCCCAAAACACAAGGTGGCTATGGAGCGAaagctggaggagctggaggcAAACTTCCATTTGGATACGGGGgctttggtggtggtggtggtggtggagcagGCCTTCCTGGGGGAAAAGGAGGTCCTGGATCCAAGCCTGGATACCCCATTGGAACTGGTGTGGGGACAGGAGGTCTTAACCCGGCCCAGGCTCAAGCTAAAGCTGCTAAATATGcCCTAGGTGCTGGTTTGGGTGGTGTGCCTGGTGCAGGTGGAGCCTACCCTGGAGTAGGAGGAGCTTACcctggagGATATAATCCTGCTGCAGCCAAAGCTGCTAAATATGGAGTCCCAGGAGGTGCAGGGGGCGTCCCAGGTCTTGGATCAGtagcaggaggagcaggaggagtacCTGGAGGGGTACCCGGAGGAACTGGAGGATATAACCCTGCTGCGGCCAAAGCTGCTAAATATGGAGTTCCAGGGGGTGCAGGAGCAGGCCTAGGAGCTGGAGGACTTGGAGGAGTACCAGGAGGGGTACTAGGAGGGGGAGGTGTACCTGGGGCTGCAGGATATAATCCCGCAGCGGCCAAAGCAGCTAAATATGGACTCCCTGGAGGAGGTGCAGGCGGTCTTCCAGGTGCTGGATCAGTTgcaggaggagtaggaggagtaCCAGGAGCTGGGGCTGGAGGATATAATCCTGCTGCGGCCAAAGCCGCTAAATATGCAGTTCCAGGAGGAGCAGGCGCAGGGTTAGGGGGAGCTGGAGGCTATGGAGCGGGAGCCAGGCCTCCCTATTATGGTGTTCCAGGGAGTGCTGGATTTGGGGGAGCAGGGACTTTTCCAGGGGCTGGAGgatACAACCCTGCCACCAAAGCCGCTAAATATGGAATACCAGGAGGTGCAGGAGCAGGCCTAGGAGCTGGAGGActtggaggagcaggaggaggggtACCAGGGGCTGGAGGTGGAGgaTACAATCCTGCTGCCGCTGCCAAAGCTGCTAAATACGGGGTCCCAGGAGGTGCAGGGGCAGGCCTAGGAGCTGGAGGTCTTGGAGGAACAGGAGGGGTACCAGCAGGAGGAGCTGGGGCTGGAGGAGTCCCCGGAGGTGCAGGAGCAGGAGGAGTACctggaggaggagcagggggtgtACCTGGGGCTTTAGGATATAATCCCGCTGCAGCCAAAGCTGCTAAATATGGAGTTCAAGGAGGTGTAGGAACAGGCCTGGGAGCAGGAGGActtggaggagcaggaggaataCAGGGAGTACCTGGAGGAGGAGCAGGGGTTGTCCCTGGGGCTGGAGGATATAATCCTGCTGCAGCCAAAGCTGCTAAATATGGTCAGGGGGCTGCTGGTGGGCCAGGGGGTGGATATGGGGGTGTGCCTGCTGGAGGATATCCCAGGCCTGGGAGCTATGGGGGATATGGAGGGGCAGCAGGAGGGGCAGGAGCTGGAGgATATAATCCTGCTGCGGCCAAAGCTGCTAAATATGGAGCTGGAGTAGCCGGCCTAGGAGCTGGAGTAGCCGGCctaggaggagcaggaggagggccAGGGACTGGGGCTGGACCAGGATATGGAGGCTATGGAGGATATGGAGGGGTACCAGCAGGAGGGGCTGCCGCTGCTGCCAAAGCTGCTAAATATGGAGTTCCAGGAGGAGCTGGCGTGGCCGGGAGAGCAGGAGGGGTACCCGGGGCTGGATATGGAGGACATAATCCTGCTGCGGCCAAAGCTGCTAAATATGGAGTTCCAGGAGGTGCAGGAGCAGGCCTAGGAGCTGGAGGActtggaggagcaggaggagggttACCAGGGGCTGGAGGActtggaggagcaggaggaggggtACCAGGGGCTGGAGGATATAACCCTGCTGCGGCCAAAGCTGCTAAATATGGAGTCCCCGGAGGTGCAGGAGCAGGAATAGGagctggaggagcaggaggattaccaggaggaggattactaggaggaggaggaggggctgtAACTGGGGCTGGTGGATATAATCCCGCTGCAGCCAAAGCTGCTAAATATGGAGTCTCAGGAGGTGTAGGAACAGGCTTAGGAGCAGGAGGAGTACAGGGTGGAGTAGGAGCTGGAGGATATGATCCCGCGGCCAAAGCTGCTAAATATGGTAAGCCAAACGGGGTGGGCATCGGTGGAGAAGGTGTGCCAGCGCCAGCAGCGACTCCAAGTCCAGGTGTGGGCgtgggtggtggtgttggaggaACTGCCATTGAGCGCACTGACTTACCAGTGGGCACAGGGATACCTATCGCAGGCAAACCAGATCCCACACCTATTGGCACACAGGCCACAGAGGCCCCAAAGCCAGAGCCCAGTGCCACAGGATTACCAGGAGTTGGTGCTGGGGTTCTTCAACCTAGTGCTGGTACAGGCCCAGCTCAGCCTGGTGTGGGTGTCGGAGCAGGTGGCAAAGCTCCTAAACCGCCTGGTGCAGGGGGATACCCGTATGGTGGTTATGGACAGGCAGGACGACTCCCGTATGGTCATGGACAGGGTGCAGGTGGATATCCCTATGGAGGAGGCTATGGAACTCCATACGGAGCAGGAGCTGGACAACTTCCTGGAGCCAAGCCCCTGAAACCTCCAGTTGTGGGAGGAGCAGGCGGTGTGGCTGGAGGAGCAGGTATTCCTCTTACTGGAGCCGGTGGTGGTGTAGGGGGATACCCGTATGGTTATGGTCAAGGTGGttatggacagggacaggGTGCGAGGTATCCTGCTGGTGTTGGTCTGGGAACAGGGGCAGGAGCAGGTCAAAAAGCACCCAAACCCCCAGGTTATGGTAACCTGGGTGCTGGTGGTGCTGGTTATAATCCAGGTGCTGGTGCGGTCCCAAATTACGGAGGTGGCTACCCACAACAACGGGGCTACCCACAGCAAGGTGGCGGCTACCCACAGCAAGCCTACCCGGGAGCATATGGAGCAGGCCAGACGGCACCACTGACTCCTCAACAAGCCAAAGCAGCCAAGTATGGCCCACTCCAGAGCTTCCTtggtggagcaggaggaggaggctaCAGACCAGGAGGAGTTGCTGCTGGATGCCAAAGCAAATACTGTGGAAGGCGGAAGTAGAGGATGTTCTTGAGAAGAAGTTGAATTTCAAGAAACAATGGTGCTACTGCATTATCTAGAATGTACATTTTATATGCACAAAATCCCCCATTACAGTATGTAAAGATATGTTGTACTTTATTTGATATTTTTTATACAAACCCACCGACCCAGACTTTTGCACACATTTGATGTGACTTGGTGTTATTGATTGTGCCTTTATCGTTACAGTGGTCATGGTGCTCATCATCTCTTACTGACATGCCTGCGATGCTCCCCTTTTAGTAGCTCTACTCAGtagttgtgtgtgcgtgcatgtgtgtgggcgtgtttgtgtggatgtttgCCTATGTggctgtgtgtacgtgtgcgctTGCACGTGTTGCCATAGATGTGTGCGTGTTTGGGTAGATAGGAGAATGTGAAAGATTCAGCCAGTTCTGTGACAGTACATCCCTCTACTGCAGTATCCCCAATTGCTTAGTGTCTGTGTGTACCAAAGTTGGAGATCTTCACATACTGACACGTCAAACTAAGGGTTGAGCTTCAAGAGGTATGGTTGGTAAAGTGCTGAACTGCCTCCTCTGGCTTTCTATCATCTCTGCTGCTATTTATAGCCCTGGGTGAAATAGCAGTGGCATAGCGGGTGTGTGTGGGCACAGGTTTCACAGTCCATCTGCCATCAGTAACTATTTTAAGTGCCATGGTTTAAGTAGCCTATCTTCAGCCTTCTTACCTTGATTTCCGCCAAATTTGTGAAGTATGAAGAGCAGGTTTTGCTCTGAATGTGGGAAAGCTGATGACAATCAATCCAAAGGTGTTCAAAAGATTTTTAGGTGATCTTTAGTGATATTCATATCGTACATTGTGTCGGTTTGTACCAATCATTTGAAATGCGGTGTGTTTTGTTTCTTAAATGATTTgtatgtttttagtttttagaaaTGCAGGTTTTACAAAAATGTCAAAGTAAAATTCAAATCCTTTCGATACTGCTCTGGCATGTATTGTACATTATGTATGTATGACATGAACATTTTGTTTTCTTAATTATGTATAATTTTTCTGGTGTCCAAGATTAAGTGCCTAGAATGTTATGCATATCTGGAATCATTCTAGTTTCACATGCAGTTATAGTTTAATTTATGCAAATTGCCTCTCATTATTCAAGTTTCAAATGTTTCTGGTCAGAAAAGTAGACTATCTCCAGATTTGTGTAATCTAGAATAAGGCAACTAACTGTATGTTGTAGTAATAGCCCTAGGTTATCatgactctccctctcttcagTTCTTGTAGCCTACTCCGTGATGGTTTTATGAAATGTGTgagccacacctgtcaggggcCGCTGCCCTGTGCCGTGGGATAGTATTCATCTGATTTAAACAGAAAAAAATAAGGAATTATGGGGTTTTGTACTTTTTAATTTTCACAGCACATTTGACTTGTGCCCAGCAATACCGACCTTTTATTTGCTtcagtaaaaaaaagaaataaaattgTTTTAATGAATACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2182560 lncRNA downstream 156396 16836742 ~ 16837111 (-) True G1908373
TU2182471 lncRNA downstream 196867 16751127 ~ 16796640 (-) True G1908301
TU2182455 lncRNA downstream 216696 16719356 ~ 16776811 (-) True G1908285
TU2182442 lncRNA downstream 231466 16758103 ~ 16762041 (-) True G1908272
TU2182438 lncRNA downstream 271968 16715166 ~ 16721539 (-) True G1908269
TU2182761 lncRNA upstream 143633 17230892 ~ 17233704 (-) True G1908551
TU2182822 lncRNA upstream 219322 17306581 ~ 17309103 (-) True G1908604
TU2182824 lncRNA upstream 223073 17310332 ~ 17314262 (-) True G1908606
TU2182944 lncRNA upstream 437197 17524456 ~ 17531758 (-) False G1908714
TU2182946 lncRNA upstream 437197 17524456 ~ 17531758 (-) True G1908714
XR_005039323.1 mRNA downstream 214 16921107 ~ 16993293 (-) False LOC110503880
XM_021582494.2 mRNA downstream 214 16924662 ~ 16993293 (-) False LOC110503880
XM_036961281.1 mRNA downstream 12413 16924662 ~ 16981094 (-) False LOC110503880
XM_021582495.2 mRNA downstream 12944 16924662 ~ 16980563 (-) False LOC110503880
XM_021582496.2 mRNA downstream 43117 16924663 ~ 16950390 (-) True LOC110503880
XM_021582499.2 mRNA upstream 123707 17210966 ~ 17217503 (-) True LOC110503884
XM_021582501.2 mRNA upstream 152963 17240222 ~ 17244470 (-) True LOC110503885
XM_021582504.2 mRNA upstream 187163 17274422 ~ 17276481 (-) True LOC110503887
LOC118944080 mRNA upstream 190295 17277554 ~ 17278524 (-) False LOC118944080
XM_021581796.2 mRNA upstream 192639 17279898 ~ 17281525 (-) True LOC110503457
TU2182093 other downstream 832281 16158846 ~ 16161226 (-) True G1907951
TU2182062 other downstream 860945 16131990 ~ 16132562 (-) True G1907922
TU2181985 other downstream 949202 16036987 ~ 16044305 (-) True LOC110503846
TU2180125 other downstream 1480414 15512359 ~ 15513093 (-) True G1906218
TU2180103 other downstream 1492747 15500204 ~ 15500760 (-) True G1906198
TU2182802 other upstream 190548 17277807 ~ 17278410 (-) True LOC118944080
TU2183897 other upstream 1344765 18432024 ~ 18434792 (-) False LOC110503924
TU2183901 other upstream 1344765 18432024 ~ 18434792 (-) True LOC110503924
TU2184703 other upstream 1880803 18968062 ~ 18973230 (-) False LOC110503944
TU2184704 other upstream 1880803 18968062 ~ 18973230 (-) True LOC110503944

Expression Profile