RNA id: TCONS_00053314


Basic Information

Item Value
RNA id TCONS_00053314
length 630
RNA type nonsense_mediated_decay
GC content 0.47
exon number 7
gene id XLOC_027045
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5255041 ~ 5273838 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCAGGAGAGCGAGTGAAGGAATCGTGTACGGAAGTATTTCCCaacatttcttttctttaattaaaCCCTCAAGCTTTCCAAAATGACCAGAACAAGGACcgtaaagaaagagaaaataagtgTGGCGAGTGAGaTTGACCGCGTAGAAGAGCGTAAATTGCAGTGTAAAAACAGCCTGGAGCGGGCAGAGTTCAGAAAGAGGAAACAGCAGCTCTCAGACGACGACAGGCTGGCTCTGGAAGATGAGATGACCATACTGAATGAACGAGTAGAGAAATACGaaAAGGATCTGCAGGTGCTGAGAGGAGAAAACCGGAGGAACATGATGCTGTCCGTCGCTCTGCTAGCCATCAGCGCTCTTTTCTACTACACATTTATATATTGAAGAGGGGCTCCTGCTGGAAACTGTGGCCTCACTGGTTGTTGAGCAGCCATCATCGGAGAGCCAGGCATCATGGGAGCAGCTCCTCCTGCAGGCTGTGGGTCACAGAGAGACACACGACTTACTATTGAGGAGgcattcaacaagaagaggcaatacacacaacaagTATTACACTTCAaaggaactgtttgtgctcagagaattaagtgctaagGTGCACTTAAAAGTTGGACTTTGATGGTTA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-79 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CCDC167 (coiled-coil domain containing 167).

Ensembl:

ensembl_id ENSDART00000144658

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057567 lncRNA upstream 288528 4963839 ~ 4966550 (+) False XLOC_027036
TCONS_00053302 lncRNA upstream 288528 4963892 ~ 4966550 (+) False XLOC_027036
TCONS_00053303 lncRNA upstream 288528 4963894 ~ 4966550 (+) False XLOC_027036
TCONS_00057568 lncRNA upstream 288528 4964940 ~ 4966550 (+) True XLOC_027036
TCONS_00057561 lncRNA upstream 292456 4938766 ~ 4962622 (+) False XLOC_027035
TCONS_00057569 lncRNA downstream 29111 5302949 ~ 5304672 (+) True XLOC_027046
TCONS_00053331 lncRNA downstream 147068 5420906 ~ 5421470 (+) False XLOC_027052
TCONS_00057570 lncRNA downstream 147068 5420906 ~ 5422958 (+) False XLOC_027052
TCONS_00057571 lncRNA downstream 147068 5420906 ~ 5424158 (+) False XLOC_027052
TCONS_00057576 lncRNA downstream 147068 5420906 ~ 5454556 (+) False XLOC_027052
TCONS_00053312 mRNA upstream 1105 5249494 ~ 5253973 (+) True XLOC_027044
TCONS_00053310 mRNA upstream 31908 5215950 ~ 5223170 (+) False XLOC_027043
TCONS_00053311 mRNA upstream 31940 5218694 ~ 5223138 (+) True XLOC_027043
TCONS_00053309 mRNA upstream 41653 5205265 ~ 5213425 (+) True XLOC_027042
TCONS_00053308 mRNA upstream 51735 5196469 ~ 5203343 (+) True XLOC_027041
TCONS_00053315 mRNA downstream 43645 5317483 ~ 5324588 (+) False XLOC_027047
TCONS_00053316 mRNA downstream 45063 5318901 ~ 5325336 (+) True XLOC_027047
TCONS_00053318 mRNA downstream 60150 5333988 ~ 5339829 (+) False XLOC_027048
TCONS_00053317 mRNA downstream 60150 5333988 ~ 5339829 (+) False XLOC_027048
TCONS_00053319 mRNA downstream 60150 5333988 ~ 5339857 (+) False XLOC_027048
TCONS_00053296 other upstream 366574 4834085 ~ 4888504 (+) False XLOC_027034
TCONS_00053293 other upstream 564237 4690726 ~ 4690841 (+) True XLOC_027031
TCONS_00053290 other upstream 868070 4376498 ~ 4387008 (+) True XLOC_027026
TCONS_00053267 other upstream 2673047 2581916 ~ 2582031 (+) True XLOC_026997
TCONS_00053256 other upstream 3280184 1958240 ~ 1974894 (+) False XLOC_026987
TCONS_00053330 other downstream 129277 5403115 ~ 5416987 (+) False XLOC_027051
TCONS_00053333 other downstream 192160 5465998 ~ 5478348 (+) False XLOC_027051
TCONS_00053334 other downstream 214443 5488281 ~ 5494298 (+) True XLOC_027051
TCONS_00053336 other downstream 233114 5506952 ~ 5515862 (+) False XLOC_027055
TCONS_00053350 other downstream 504391 5778229 ~ 5784871 (+) True XLOC_027061

Expression Profile

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