RNA id: TU2182802



Basic Information


Item Value
RNA id TU2182802
length 559
RNA type TUCP
GC content 0.53
exon number 2
gene id LOC118944080
representative True

Chromosome Information


Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 17277554 ~ 17278524 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAAAGCAGAACCCAGACAGTGAAACCCTTTTGTGTGTGAAGTTGAGACAGTTAAGAGAGTGAAGACACATGTAGACTTACTTACAAAGGAAGGTAAAACAACAAATGGCTGTGTTGGGACTAGAGATCTTGGGAGTGATCCTGGCTGTCCTGGGTTGGATATTAAGCATCGTGTCCTGCGCCATGCCCATGTGGAGTGTGTCCGCTTTCATCGGGGTCAACATCATCACAGCTCAGACCATGTGGGAGGGCATCTGGATGACCTGTATGGTGCAGAACACGGGCCAAATGCAGTGTAAGGTCTACGACTCCATGCTAGCCCTCAGCTCTGACCTGCAGGCAGCCCGAGCCCTCACAATCATCTCTATAGTTGTGGGCATCATGGGGGTGCTGGTGGCCGTGGTGGGGGCTAAGTGTACCAACTGTGTTGAGGACGAGACGGCCAAGGCCCAGGTGATGATCGCAGCCGGGGTGGCCTTCAACAGAATCATCATGGATTTCTATAGTCCCATCACTCCTGAGGCTCAGAAACGGAGATTGGAGGGGCTCTCTACCTGGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2182761 lncRNA downstream 44103 17230892 ~ 17233704 (-) True G1908551
TU2182648 lncRNA downstream 280322 16993512 ~ 16997485 (-) True LOC110503876
TU2182560 lncRNA downstream 440696 16836742 ~ 16837111 (-) True G1908373
TU2182471 lncRNA downstream 481167 16751127 ~ 16796640 (-) True G1908301
TU2182455 lncRNA downstream 500996 16719356 ~ 16776811 (-) True G1908285
TU2182822 lncRNA upstream 28171 17306581 ~ 17309103 (-) True G1908604
TU2182824 lncRNA upstream 31922 17310332 ~ 17314262 (-) True G1908606
TU2182944 lncRNA upstream 246046 17524456 ~ 17531758 (-) False G1908714
TU2182946 lncRNA upstream 246046 17524456 ~ 17531758 (-) True G1908714
TU2183014 lncRNA upstream 294436 17572846 ~ 17573066 (-) True G1908777
XM_021582504.2 mRNA downstream 1326 17274422 ~ 17276481 (-) True LOC110503887
XM_021582501.2 mRNA downstream 33337 17240222 ~ 17244470 (-) True LOC110503885
XM_021582499.2 mRNA downstream 60304 17210966 ~ 17217503 (-) True LOC110503884
XM_021582461.2 mRNA downstream 190548 16993507 ~ 17087259 (-) False LOC110503876
XM_021582468.2 mRNA downstream 190548 16993507 ~ 17087259 (-) False LOC110503876
XM_021581796.2 mRNA upstream 1488 17279898 ~ 17281525 (-) True LOC110503457
XM_021582507.2 mRNA upstream 47184 17325594 ~ 17329122 (-) False LOC110503890
XM_021582508.2 mRNA upstream 47184 17325594 ~ 17329423 (-) True LOC110503890
XM_021582513.2 mRNA upstream 254711 17533121 ~ 17549492 (-) False LOC110503892
XM_021582511.2 mRNA upstream 254711 17533121 ~ 17549493 (-) True LOC110503892
TU2182093 other downstream 1116581 16158846 ~ 16161226 (-) True G1907951
TU2182062 other downstream 1145245 16131990 ~ 16132562 (-) True G1907922
TU2181985 other downstream 1233502 16036987 ~ 16044305 (-) True LOC110503846
TU2180125 other downstream 1764714 15512359 ~ 15513093 (-) True G1906218
TU2180103 other downstream 1777047 15500204 ~ 15500760 (-) True G1906198
TU2183897 other upstream 1153614 18432024 ~ 18434792 (-) False LOC110503924
TU2183901 other upstream 1153614 18432024 ~ 18434792 (-) True LOC110503924
TU2184703 other upstream 1689652 18968062 ~ 18973230 (-) False LOC110503944
TU2184704 other upstream 1689652 18968062 ~ 18973230 (-) True LOC110503944
TU2184852 other upstream 1882039 19160449 ~ 19162158 (-) True G1910398

Expression Profile