RNA id: XM_021582511.2


Basic Information

Item Value
RNA id XM_021582511.2
length 2869
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC110503892
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 17533121 ~ 17549493 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGGAGCTCCATTCCCTGTTTTCCTGCGTGCCATTATTAAGCGCTATCTAGCTAGCACATTGGAATAATTCGGAAAAATTAGATAACACGACAAAATAAGAAAACGGCGAGAATACGGGtataggttaaaaaaaaaaaatttaaaaaacgttTTGCATTACTTTGAATAGTCCGAATGTGAGACGACACCTCGCTTGGAATGATTTCATCCGCATTTATGTTCTGCATTTGAGATTTCTTTCATCCGCGCAGCTGCATTATGCGGACGGTTATATTTtaggctggctggctgtgtagCAGTCTATTCGTGCAATGCACCGCTCAAAACGTCTCACAATTATTTTTCCTACACGTGGAGGATCAGAGCCGCACAGAGAATGCTTAAACATGGGATAGGCGTTTTATGTGGTCAGTATTTATCTGCTATGATTTTGAAGATCCGaggtcagagacagacagcggCTGTCCTCAAACGCGTCATAGCCCACTTCTGCTGGAtgcaaagaaagaaagacagacttGAGATAGCCTTCTGACTCTTTAAATATTTAAGAAAACGGACTCTTCAAAACTGAAGATATGCTAGTCTCTGTCTAACATCGTCTACGCTTGATCTTCTAACAATACATTTTAAACAGAGAAGTCACGTATGAGAGAGCCCATGACCAGGCTCCAAAATTACCCCGAACTAGGACGCAGCCTAAAAATTGATCCAATGCGAAATGCACCAGCTTCTCCAGTTGGAATGTCGCCTACGGTATATACATACAAAAAAATACCTTCATCAACACACATTTACATTGAACCTTATTGCACATCGCAACAAGGAGGACTCCTGAATTTGTCCTGAATCGTTCCAAAAATACTGCAATTTAGATCCCGGACATCAACAACTTTAATGGCTTTTGTGTTAAGAAGATGGAGAGTGTTATTGGTGCTGAACGTGGTTGCGGTTGCGGGGTTCATGACACTTTGGACCAAGTGCACCCACACCCGAGTAGCAAAAACCATCGGTCAGGAAGATGTGAAAAGACAATCACGATCTAACGGCACTGCTCAAGGTTTGAGCATCAGTCATGAAGTATTGCTAAAGAGGCTCGGGTCGTTGGAGGACGTGGTTTACAGACAGCTTAATGGTCTGTCCAAGTCCCTGGGGCTGATCGAGGGTTTTGGGGGGCGAGGTAAAGGGGGGTTCCCCGCCACCCTAGCCTCAAAAGAAGAGGCTGATGCCAAAGTACTGAGGGAGAAATATGGATACAATGCTTACCTCAGCCAAAAGATATCACTGGACCGGTCCATACCAGACTTCCGGCCTAGCAAGTGTAAAAAGGCCAGCTTCCCCAGGGATCTTCCAAACATCTCCCTTATCTTCATCTTTGTCAATGAGGCGTTGTCAGTAATCCTCCGCTCCGTCCACTCAGCTGTCAATCACACACCGGCTCACCTCCTCAAAGAGATCATCTTGGTGGACGACTACAGCGATGACGTTATATTTGGTTGTGTCCCAGAACAACTGAAAGGGCCGTTGGAGGATTATGTAAACAAGCGTTACCCAGGTATGGTGAAAATCGTGAGGAACCAGAAGCGAGAGGGACTGATCCGTGCCCGCATCGAGGGCTGGAAGGCAGCCAGTAGCGAGGTGACGGGTTTCTTCGATGCCCACGTTGAGTTCACACCCTCCTGGGCTGAGCCGGTTCTGATCAGAATCAAAGAGGACCACAAGAGGATCATCCTGCCCTCCATCGATAACATCAAGCACGAGACTTTTGAGCTGGAGCGCTACGAGAACTCTGGCCATGGCTACAATTGGGAGCTGTGGTGCATGTACATCAACCCCCCCAAACAGTGGTGGGATGACGGGGACACCTCCGCACCCATTAGAACTCCTGCAATGATTGGTTGCTCCTTTGTGGTCAACCGCGAGTACTTTGGGCACCTGGGGCTGCTGGACTCTGGCATGGACGTCTACGGAGGAGAGAACATTGAACTGGGGATCAAGGTGTGGCTGTGTGGGGGCAGTATGGAGGTGCTGCCCTGCTCCAGAGTGGCTCACATCGCCAGGATGAAGAAGCCCTACCACAGCAACATAGCTTCCAGCACGCGGCGTAATGCCCTGCGTGTGGCCGAGGTCTGGATGGACCAGTATAAGTCCCAAGTCTACCTGGCCTGGAACATTCCAATGGAGAACCATGGGATAGACTATGGGGACATTTCTCAGAGGGTAGCCTTGAGGAAGTCTCTGCATTGTAAGAACTTTGAGTGGTACCTGGACAACGTCTATCCAGAGATGAGGAGGTACAACAACACTCTCTTTTATGGGGAGatTCGTAGTAGCAAAGCGACCCATCTGTGTATGGACCAGGGAGAGAAGGTAAACCACACGGCCACCCTGCACCCCTGTCACGGAATGGGACCTCAGTTGGGTCGGTACACCAAGGAGGGCCATTTTTTCCTCGGCGCTCTGGGCAGTACAGGGGACGAAACACGCTGTCTGATGGACGACCAGGTCTCCAATTTCCCTCAGCTCCTCAACTGTGACAAAGTCTCCAACACCAGGCTGACCACATGGCACTTCTCTCAGAACGAGTCGATCATCAACAGAGCCACGGGTCGCTGTCTGGAGGTGATACAGGCTAACGTTTACTTCGGACACTCGCTGGTGCTTCAGACCTGCTCCGGACAGAGGTGGAACATCAAAAACACAATGAAGCAGTAGCCACAGCATGATGCAGAATTCTTCTTTGGCCAAGATAGTGTTATTGTACTGAATTGTATCAGATGTCATACTGTATTATTACAATTATTCACTTGGTGTTAACAGTTGGACTTTTCCAAGATTGTCTTCCAATAAACTGCTGGTCTGatggta

Function

GO: NA

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2182944 lncRNA downstream 1363 17524456 ~ 17531758 (-) False G1908714
TU2182946 lncRNA downstream 1363 17524456 ~ 17531758 (-) True G1908714
TU2182824 lncRNA downstream 218859 17310332 ~ 17314262 (-) True G1908606
TU2182822 lncRNA downstream 224018 17306581 ~ 17309103 (-) True G1908604
TU2182761 lncRNA downstream 299417 17230892 ~ 17233704 (-) True G1908551
TU2183014 lncRNA upstream 23353 17572846 ~ 17573066 (-) True G1908777
TU2183032 lncRNA upstream 32312 17581805 ~ 17582118 (-) True G1908789
TU2183034 lncRNA upstream 34261 17583754 ~ 17584118 (-) True G1908791
TU2183035 lncRNA upstream 35031 17584524 ~ 17584789 (-) True G1908792
TU2183047 lncRNA upstream 65764 17615257 ~ 17615495 (-) True G1908803
XM_021582508.2 mRNA downstream 203698 17325594 ~ 17329423 (-) True LOC110503890
XM_021582507.2 mRNA downstream 203999 17325594 ~ 17329122 (-) False LOC110503890
XM_021581796.2 mRNA downstream 251596 17279898 ~ 17281525 (-) True LOC110503457
LOC118944080 mRNA downstream 254597 17277554 ~ 17278524 (-) False LOC118944080
XM_021582504.2 mRNA downstream 256640 17274422 ~ 17276481 (-) True LOC110503887
XM_021582520.2 mRNA upstream 90885 17640378 ~ 17658084 (-) False LOC110503896
XM_021582518.2 mRNA upstream 90885 17640378 ~ 17658101 (-) False LOC110503896
XM_021582519.2 mRNA upstream 90885 17640378 ~ 17658271 (-) False LOC110503896
XM_021582522.2 mRNA upstream 90885 17640378 ~ 17658271 (-) True LOC110503896
XM_021582517.2 mRNA upstream 108965 17658458 ~ 17671274 (-) True itgae.2
TU2182802 other downstream 254711 17277807 ~ 17278410 (-) True LOC118944080
TU2182093 other downstream 1371895 16158846 ~ 16161226 (-) True G1907951
TU2182062 other downstream 1400559 16131990 ~ 16132562 (-) True G1907922
TU2181985 other downstream 1488816 16036987 ~ 16044305 (-) True LOC110503846
TU2180125 other downstream 2020028 15512359 ~ 15513093 (-) True G1906218
TU2183897 other upstream 882531 18432024 ~ 18434792 (-) False LOC110503924
TU2183901 other upstream 882531 18432024 ~ 18434792 (-) True LOC110503924
TU2184703 other upstream 1418569 18968062 ~ 18973230 (-) False LOC110503944
TU2184704 other upstream 1418569 18968062 ~ 18973230 (-) True LOC110503944
TU2184852 other upstream 1610956 19160449 ~ 19162158 (-) True G1910398

Expression Profile