RNA id: XM_021582519.2


Basic Information

Item Value
RNA id XM_021582519.2
length 1955
RNA type mRNA
GC content 0.44
exon number 14
gene id LOC110503896
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 17640378 ~ 17658271 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCTGTTATTGACTCATGTTTCTCCTCCATGTCATCGCCAGTAAAACCAGTAACAAAAGCATCCCTGCCTTTCAAAACGTGGGTCTCATGCAAAAGCAGAAATCGTTCACATTCTATTTTGTACTGTTGTTTTGTACAGAACATCATAGGATGTGGGAAAATTTTGCATCAACTTACACCTGTGACCTGCAGATGCACATCTATATCACGTGATTTGTTCTAAGCCTGCCACACATTTCTTGTAAATCACTCTGCTCTACAGTGTGCTGTTAATCCCTCCCCCTATTGGACAACTGGTTGTCAACTGAATGCTTTTTGTTgttaatatatgcacaaactgtctCTTCAGAAGATTTAAAGTCCATGCCCCTTGAAACTCATTGGCTGAATTGAAATATGACCTAGGGAAACAATGTCATCATTACATTGTTGTTCGTATAAAAGCTGATGGGTAGAGACAAGATTTGAACTTGATTCCAGATTTCAATAATCTCGTAGACCAGGATTTACAGTATCATCACCGTGGGATGGCTTCCAATAGCTGTAAAAGCAAAGTTCTTTTGAATGTGCTTTCCTATCTTGACTACAAGACAGGAAAATTCATAATTGTAGGAAGCAAGAGAGTCGGCAGTTTGTACAGAGTTATACAATTATCCATCATTGGATACCTTGTTGGGTATGTATTCCTGAGCAAGAAGTCCTACCAGACCAAAGAGGAATCTATCCAGAGTACTGTGATGACCAAACTGAAGGGAGTGGCGGTCACCAACACATCAGAGTTCGGACGGATGGTGTGGGGACCTGTGGACTATGTCATTCCACCCCAGGGGGAAGCAGTTTTTTTCATTGTTACCAATTTTATAGAGACACCAAACCAGAAGTTGGGCCACTGTGCTGAGTTGTGGGGTATTGTTCCACAGAGCCCCAATGTGCCAGATGGCCACTGTAAGGGAGATGAAGACTGTGCAGAGGGAGAGTTGGTGGTAGCTGGCCATGGAGTTAGGACAGGCCGCTGCTTGAGAGACAATGGGAAATCCAATGGTACATGTGAGATATATAGCTGGTGCCCCGTTGAGAGAAGATGCCAACCACAGGATAGACATAAGCACACGAATATGTTAAGAGAAGCTGAAAACTTCACCATCTACATAAAAAATGTCATCCGATTTCCCAAATTCAGTTTCTCAAAGGCCAACGTTCAGGACACGGCTGATAAATTCCATCTGAAGAAATGTCGCTACGATGAGGCTCTTGAACCCTACTGCCCCATATTCCGTCTGGGAGACATTGTTAACCAAACTGGACACAGCTTTCAGGACATGGCTTTGAAGggtggTTTAATTGGAATTCTGATTGGGTGGGAGTGCGACCTTGACAGAGATCCCTCAGAATGCCAGCCACGGTACGACTTTACTCACATTGATGTTAATGTATCCAGAGAGTCCTCAGGATTCAacttcagACATGCTCGCTATTTTAAAACTGGGTCTGGAGAAAGCTACCGAACACATTTCAAAGTGTTTGGTATACGCATCAACATTATGGTGCATGGGAAGGCTGGAAAGTTCTGTATCATACCCACCATTATCCATATAGGCTCAGGACTAGCTTGTATTGGTGGTGGGGCCTGGTTCTGTGACTGGATTCTTCTTTACCTGATGAAAAATAGGGAGTTCTATAAGGACTGGaagtttgaaaatgtgaagaaTAGTACTACAGAGGATATAAAACAAACCCCAGAGGAGCAGCAGCTCACTGACCTATCGCCTGAGGTTTAACACCATGGCAGCAGCTCACTGACCCATCGCCTGAGGTTTAACACCATGGCAGCAGCTCACTGACCCATCGCCTGAGGTTTAACACCATGGCAGCAGCTCACTGACCCATCGCCTGAGGTTTAACACCATGGCAGCAGCTCACTGACCCATCGCCTGAGGTTTAACACCATGGCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2183056 lncRNA downstream 12249 17627929 ~ 17628129 (-) True G1908812
TU2183055 lncRNA downstream 14174 17625936 ~ 17626204 (-) True G1908811
TU2183048 lncRNA downstream 24238 17615927 ~ 17616140 (-) True G1908804
TU2183047 lncRNA downstream 24883 17615257 ~ 17615495 (-) True G1908803
TU2183035 lncRNA downstream 55589 17584524 ~ 17584789 (-) True G1908792
TU2183076 lncRNA upstream 32810 17691081 ~ 17691428 (-) True G1908831
TU2183077 lncRNA upstream 33290 17691561 ~ 17692283 (-) True G1908832
TU2183029 lncRNA upstream 69010 17727281 ~ 17727534 (-) True G1908786
TU2183094 lncRNA upstream 73861 17732132 ~ 17732349 (-) True G1908849
TU2183122 lncRNA upstream 112923 17771194 ~ 17776860 (-) True G1908874
XM_021582511.2 mRNA downstream 90885 17533121 ~ 17549493 (-) True LOC110503892
XM_021582513.2 mRNA downstream 90886 17533121 ~ 17549492 (-) False LOC110503892
XM_021582508.2 mRNA downstream 310955 17325594 ~ 17329423 (-) True LOC110503890
XM_021582507.2 mRNA downstream 311256 17325594 ~ 17329122 (-) False LOC110503890
XM_021581796.2 mRNA downstream 358853 17279898 ~ 17281525 (-) True LOC110503457
XM_021582517.2 mRNA upstream 187 17658458 ~ 17671274 (-) True itgae.2
XM_021582525.2 mRNA upstream 42034 17700305 ~ 17716362 (-) False LOC110503899
XM_021582526.2 mRNA upstream 42034 17700305 ~ 17716362 (-) True LOC110503899
XM_021582532.2 mRNA upstream 80917 17739188 ~ 17814508 (-) True LOC110503901
XM_021582533.2 mRNA upstream 167921 17826192 ~ 17831204 (-) True LOC110503902
TU2182802 other downstream 361968 17277807 ~ 17278410 (-) True LOC118944080
TU2182093 other downstream 1479152 16158846 ~ 16161226 (-) True G1907951
TU2182062 other downstream 1507816 16131990 ~ 16132562 (-) True G1907922
TU2181985 other downstream 1596073 16036987 ~ 16044305 (-) True LOC110503846
TU2180125 other downstream 2127285 15512359 ~ 15513093 (-) True G1906218
TU2183897 other upstream 773753 18432024 ~ 18434792 (-) False LOC110503924
TU2183901 other upstream 773753 18432024 ~ 18434792 (-) True LOC110503924
TU2184703 other upstream 1309791 18968062 ~ 18973230 (-) False LOC110503944
TU2184704 other upstream 1309791 18968062 ~ 18973230 (-) True LOC110503944
TU2184852 other upstream 1502178 19160449 ~ 19162158 (-) True G1910398

Expression Profile