RNA id: XM_021581797.2


Basic Information

Item Value
RNA id XM_021581797.2
length 1087
RNA type mRNA
GC content 0.42
exon number 1
gene id LOC110503459
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 17835939 ~ 17837025 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttaTCTATTGCTCGAAAGTTAACATGATTTCATGTTTAAATGTCATCCTTTGTGACATGTTTATGAAATGCAATTACTGTACATAACTTCTTGTTATTGGCTATTTCATTGTGTGATTATGGCTGACAACAATACAACAGCTGCAGATGGTGGTAGCAGCTCCTCTCTGCAACAAGTTAATGACATGATCATAATAGTCCAGGTGATGAATGCAATCTTCATTTACATCATCTGCCTGCTCATCTTCACCTTCTTCAAAAAGGACACCTTTCTCTCAAACACACGTTATATTTTCTTTGCTCACACACTGCTAGTTGACTGTCTGTACCTAATCATGACTAATAACTTGCTCCTCCTGACTTACTTTAGTGTCACCATGccagctgctgtgtgtgttttcttctgTGTGTTGCTTTGTGAGTTGACCTTTGTCACGCCGCTGACACTGACAGCCATGAGCCTGGAGCGGTATGTGGCCATCTGCATGCCCCTGCGCCATGGAGAGCTCTCCACTGTACGCAGAGCCATTCACTGCATCCTACTCATCCACAGCATCAGCGCCATACAGCCCATCATAATTGTCTCCATCTTCTTTGCCTCAGTCCCTCTGGGCTTCTACACGCAGTATAAGCTGTGTTCAGCAGATATGTTTATTGCACACAAGTGGCAGAGACACCTTAGATCAGTTATAGGTCAGTTCTACTTTCTGGCCATGTCCATCACCATTGTGTTTACCTATGTTAGAATAATTGCAGTGGCCAAAGAATCTTCGGACAATAAGAAATCTTTATCTAAATGTCGTAAAACGGTGATTCTCCACGCTATCCAGTTGTTCCTGTGTCTGATCCAGCTGTGGTGCCCGTTCATTGAGGCTGCCATCCTGCCAATTCATTTGAAATTGTACAATGTGAGATTCtttgattacattgtttttattCTGGCCCCGCGATGTCTTTGTCCACTTGTCTATGGCCTAAGGGATGAAAAGTTTTTCCTTGCAATTAAATGTTATGTATTTTTTGGGGTGAATAAGAACATTTCCCCAATACTTGTTGATAACTTAATTACTGGTCATATGAAAACATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2183122 lncRNA downstream 59079 17771194 ~ 17776860 (-) True G1908874
TU2183094 lncRNA downstream 103590 17732132 ~ 17732349 (-) True G1908849
TU2183029 lncRNA downstream 108405 17727281 ~ 17727534 (-) True G1908786
TU2183077 lncRNA downstream 143656 17691561 ~ 17692283 (-) True G1908832
TU2183076 lncRNA downstream 144511 17691081 ~ 17691428 (-) True G1908831
TU2183188 lncRNA upstream 114 17837139 ~ 17844116 (-) True G1908929
TU2183191 lncRNA upstream 10906 17847931 ~ 17854106 (-) True G1908932
TU2183262 lncRNA upstream 96950 17933975 ~ 17934581 (-) True G1908996
TU2183267 lncRNA upstream 100688 17937713 ~ 17948050 (-) True G1908999
TU2183239 lncRNA upstream 126235 17963260 ~ 18015869 (-) True LOC110503905
XM_021582533.2 mRNA downstream 4735 17826192 ~ 17831204 (-) True LOC110503902
XM_021582532.2 mRNA downstream 21431 17739188 ~ 17814508 (-) True LOC110503901
XM_021582525.2 mRNA downstream 119577 17700305 ~ 17716362 (-) False LOC110503899
XM_021582526.2 mRNA downstream 119577 17700305 ~ 17716362 (-) True LOC110503899
XM_021582517.2 mRNA downstream 164665 17658458 ~ 17671274 (-) True itgae.2
XM_036961081.1 mRNA upstream 5683 17842708 ~ 17843664 (-) True LOC118943999
XM_036961082.1 mRNA upstream 12448 17849473 ~ 17850429 (-) True LOC118944000
XM_036962085.1 mRNA upstream 18265 17855290 ~ 17859396 (-) False wu:fc27b11
XM_036962086.1 mRNA upstream 21228 17858253 ~ 17859369 (-) True wu:fc27b11
XM_021581798.2 mRNA upstream 86699 17923724 ~ 17926934 (-) True LOC110503460
TU2182802 other downstream 557529 17277807 ~ 17278410 (-) True LOC118944080
TU2182093 other downstream 1674713 16158846 ~ 16161226 (-) True G1907951
TU2182062 other downstream 1703377 16131990 ~ 16132562 (-) True G1907922
TU2181985 other downstream 1791634 16036987 ~ 16044305 (-) True LOC110503846
TU2180125 other downstream 2322846 15512359 ~ 15513093 (-) True G1906218
TU2183897 other upstream 594999 18432024 ~ 18434792 (-) False LOC110503924
TU2183901 other upstream 594999 18432024 ~ 18434792 (-) True LOC110503924
TU2184703 other upstream 1131037 18968062 ~ 18973230 (-) False LOC110503944
TU2184704 other upstream 1131037 18968062 ~ 18973230 (-) True LOC110503944
TU2184852 other upstream 1323424 19160449 ~ 19162158 (-) True G1910398

Expression Profile