RNA id: XM_036962085.1



Basic Information


Item Value
RNA id XM_036962085.1
length 974
RNA type mRNA
GC content 0.44
exon number 3
gene id wu:fc27b11
representative False

Chromosome Information


Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 17855290 ~ 17859396 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCTGTGATCTTTGTGATATGACTTTCTTTAAGCACGTACTGATGAAACTGTCacttaatatttttttcttaaagtcTATAAACGCTCTACATTTATTCACTCTGTGATAGGGTTGGATCCTATATGCTACTTTTATTATTGTCCTGTAAATGGTTCAGTGCCTAGAATTTAGGCTGTGTGTAGAATGGGGCATAAAGGAAATTACTAGATTATAGTGATAAGGAAAACAGCATACAGTTTTGGCCTGGGTATTCACTTGCCTATAACTAATCAGAATTCCATTATGTTTACATAAAGAAGAGAATACTTCAAAATGAGAAGATCCTGCCATGGAAAAGACGACTGGGTGGACAGGAAGTGTAGAAGAGGGGAAATAACTCACAACATGCAGCAGGACACCTTCAGCTGCGGGGTCTTTGTAATGCAGATGGCCAAGGAAGTTGCACAGAACTTCCCCAACATCCACTCCCAAATTGATAAGGAACCTTCACAAAAACACATGGAGCAACTGCGAAAAGAAATGGCTGAGGATATACTAAAAATGTCTGgccggtggtggctggtccactccaggagtctgaggtgcgggaggttcctccaccCCTTCTGGACaccgagggggccccggcgtatgcTGTTCGAGCCATCCTGGACTCAAGGtgtcttcagtacctcgtggagtgggaggggtacggtccggaggagacaTTCTGGGTGGAGGACGTCTTGGACCCTTCGTTGCTGCGGgagtcaccggccttctagccatcgccgatccacttttcattttccatttgtgttgtctttgtcttacacacctggtttcagttccccaattacttgttcattatttaaccctctgttcccccatgtttgtcaGTTTgagtaattgtttattgtaatgCGGTCCGCATTTGTGGCCTTGTATTTATTACGACGTGTATTGTTATATTATTGAGTAAAATTGCTttcat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2183191 lncRNA downstream 1184 17847931 ~ 17854106 (-) True G1908932
TU2183188 lncRNA downstream 11174 17837139 ~ 17844116 (-) True G1908929
TU2183122 lncRNA downstream 78430 17771194 ~ 17776860 (-) True G1908874
TU2183094 lncRNA downstream 122941 17732132 ~ 17732349 (-) True G1908849
TU2183029 lncRNA downstream 127756 17727281 ~ 17727534 (-) True G1908786
TU2183262 lncRNA upstream 74579 17933975 ~ 17934581 (-) True G1908996
TU2183267 lncRNA upstream 78317 17937713 ~ 17948050 (-) True G1908999
TU2183239 lncRNA upstream 103864 17963260 ~ 18015869 (-) True LOC110503905
TU2183294 lncRNA upstream 141837 18001233 ~ 18007350 (-) True G1909024
TU2183663 lncRNA upstream 192458 18051854 ~ 18052194 (-) True G1909345
XM_036961082.1 mRNA downstream 4861 17849473 ~ 17850429 (-) True LOC118944000
XM_036961081.1 mRNA downstream 11626 17842708 ~ 17843664 (-) True LOC118943999
XM_021581797.2 mRNA downstream 18265 17835939 ~ 17837025 (-) True LOC110503459
XM_021582533.2 mRNA downstream 24086 17826192 ~ 17831204 (-) True LOC110503902
XM_021582532.2 mRNA downstream 40782 17739188 ~ 17814508 (-) True LOC110503901
XM_021581798.2 mRNA upstream 64328 17923724 ~ 17926934 (-) True LOC110503460
XM_021582536.2 mRNA upstream 103862 17963258 ~ 17973190 (-) False LOC110503905
NM_001124487.1 mRNA upstream 129833 17989229 ~ 17999347 (-) False ca4
XM_021581481.2 mRNA upstream 129833 17989229 ~ 17999541 (-) False ca4
XM_021581482.2 mRNA upstream 129833 17989229 ~ 17999629 (-) True ca4
TU2182802 other downstream 576880 17277807 ~ 17278410 (-) True LOC118944080
TU2182093 other downstream 1694064 16158846 ~ 16161226 (-) True G1907951
TU2182062 other downstream 1722728 16131990 ~ 16132562 (-) True G1907922
TU2181985 other downstream 1810985 16036987 ~ 16044305 (-) True LOC110503846
TU2180125 other downstream 2342197 15512359 ~ 15513093 (-) True G1906218
TU2183897 other upstream 572628 18432024 ~ 18434792 (-) False LOC110503924
TU2183901 other upstream 572628 18432024 ~ 18434792 (-) True LOC110503924
TU2184703 other upstream 1108666 18968062 ~ 18973230 (-) False LOC110503944
TU2184704 other upstream 1108666 18968062 ~ 18973230 (-) True LOC110503944
TU2184852 other upstream 1301053 19160449 ~ 19162158 (-) True G1910398

Expression Profile