RNA id: XM_021582536.2


Basic Information

Item Value
RNA id XM_021582536.2
length 4436
RNA type mRNA
GC content 0.39
exon number 2
gene id LOC110503905
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 17963258 ~ 18015869 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTTCTGAGTGATGACGCAGTCAGGGGAAAGTGTGAGGAACGAGAAAGGGTGTCCCGTCCGCACTAGCACAGACTGCACCGAACAGCTGCAGCCTAGGTTCACATAGAGTTTCACAGCATTGCGAGTAGTACACATATAATTTCATCCCAAAACCTATAGAATAACGTTCACACTAACTAAATATTAAAATGGTTGATCGCGAGCAGCTGGTGCAGAAAGCCAGGCTGGCTGAACAGGCTGAAAGGTATGATGATATGGCAGCTGCCATGAAATCGGTAACAGAGCTGAATGAGGCGCTATCTAATGAGGAGAGGAACCTCCTGTCTGTGGCCTATAAGAATGTGGTCGGGGCCCGTCGTTCCTCTTGGAGGGTGATCTCTAGCATCGAGCAGAAGACCTCTTCAGATGGAAATGAGAAAAAGATTGAGATGGTTCGGGCCTACAGAGAGAAGATTGAGAAGGAGCTAGAGACTGTGTGTCAGGACGTGCTCAACCTGCTGGATAACTACCTGATCAAGAACTGCAACGAGACGCAGCACGAGAGCAAGGTGTTTTACCTGAAGATGAAAGGCGACTACTACCGCTACCTGGCTGAGGTGGCCACGGGCGAGAAGAGGGCCACCGTCATTGAGTCATCAGAGAAGGCTTACAACGAGGCCCATGAGATCAGCAAAGAGCACATGCAGCCCACCCACCCCATCCGCCTCGGCTTGGCTCTCAACTACTCTGTGTTTTACTACGAGATCCAGAATGCCCCTGAGCAGGCCTGTCATCTGGCCAAGACCGCCTTCGATGACGCTATTGCTGAGCTGGACACCCTGAACGAGGACTCCTACAAAGACTCCACTCTCATCATGCAGCTGCTCCGAGACAACTTAACACTGTGGACAAGTGACCAGCAGGATGATGAGGGAGGGGAGGGCAACAAAGATTAATAAACCACACTTAGAAAAGATATATAATGAAGGGCCGGTGGGCTTTGGCAGGCGCTTTTGCTGATGATCTTACCGCAGCAGTTCTTTATTTTTCCATGTGTTAAAATAAAAGAATCAAAAGAAAGGTGAGGGGAGGTTACATCTTAGGCTAATATATATATCGATATATATGGTTGAAAGGGCCTCCGTCTTCTTGATTTTATCTTTGACATTTGCCAAAACCACTGAAATGTCAGTCAATCCTGAAGTGGTTGTTGTTGGATTGGTTTGGCAGTCTCACACTGGCATAGGGACTGGTGTCGTACCAAGGGAAGCTGCTTAGTTAGGTTTATGCATGATAGAGATGCAGACACTTGAGGAAGGGGGGAAGTTTGCAAATAGTTTGCAATGGTTCCAGTACTAGCAACTcagccacttttcaacctcatattcattatctcagcaccaaaccagtgtctacTTATGTGAAAACATTgcgtttctatgatctgtggttaaaaagataaGAAGAAAGGTCCTAAAAAAATGATTCTGTGACGTCACAGAATTTCTAGCCAGAGATGGGTTCTTGCTCCCCACGTCACCGCAAATCTCatagtgtttgaaaatcactttttttgttgtgaatttgaacatgaattATGCCTCTATTTTTTTTGTACCTAATGATCAATGAAAACTTGCTCGGTAGGTctgtcctcattgtggttttacaggcGTGTTTAATACGTCTTAATAACACACTTCATTTGAATATTTATGACATGCGTATCtggtagcacttatttgtttttccttcGCCTCCAACCCCTTTCGATGTgggtggggctaggtctacataaagGTGCTAGTTTTAAAAAACCTCAcaaaagctctgatgaaggccgtgaggccgatacataagcttattaaagatcagtgatactatcaagagcagtgtttCGTTTTTCATTCAAAATCACAGTTTTTAAAATGTTGACACTTTTGATGTCATCAGGTAGAACATTTTAAtgctatttttttatatatttttttaagtcaacaaaacatacattttcacatatgtagacatTGGTTtagtgctggagatgatgaatatgaggtTTGAAAAGTTGCGGAGTTGCCCTTTAAGTTATATCACTCACTCTTGAAGGGAGTGCAGGACAGCCAAGAAAATGCTAATAGTATTAATCTGACCAAATCAACTAGAAAAAGTCAAATGCAGATGTTTGGTTAAAATGTTTGATGTTTATTGTAAAGGATAAAATACTGTTATCAATTTACTCTTTCACATGACTTCTAGTTTTAGGTATATTTGGCATTAAATCTAATGTGACTGTCCTCTGACAGCTCTAAATATGATACTGGAACCATGGCTTAACCTCCAATAGAGTCTATCTAAAGGCAGAGACAGTTTAAAACTGAGTCATTATGTTAAAGCAGCTGCGGAGTTTGTGGTTTACTTCTGTGTTTGTTTTATTAAATGCACTTGCCTACTACACTGTTTCTTCAGTGTAAGATGATTACTACAATAATATCGATTATTCAGTATTGTGCATGCTGGTGAAGTATTTAAACATACAGTAGCTTGACTTTATTAACTTATACTGTGGGTGTTAAGTATTCATATGATTGAGAAAACATAGGCTTTGTCTGATTATTTCTTATTTATAActtattcatatttttattttttttgctataTCAAAATGTTGATCGTAAAAATGGACATGTTATGAGCATTGCTATAGTGACATGCAATATGTATTTAATTTGTTAATGGAAGGGGAAAAACACACCGGTGATTGCTTAATCTTACCAACTGGTGTTTGTCATGTTAAATTATAATAATTGCTTTGTCACATTAAATTATAATAATGGCTTTGTCATGTTAAATTATAATAATGGCTTTGTCACATTAAATTATAATAATGGCTTTGTCACATTAAATTATAATAATGGCTTTGTAAAACAAATACTTTGTTCTTTGAACTATTTGATGACTTATTTTGTCATGTTATTAACCAGTTTGAACAATGGTGAAGTTTTCAGAATCTGTTTCTGTTATGAATTCACCACATGGACCACAATATATTTCTGACagtatacatttttttggtttgtttttatACCTTTTAGCTGTTTGAGTGACGAATATCTTGAATGTGAGTCATTATGTAGCAGTTGCACAAGAAACGAGAACTATGATTCTAATTTAAAAAAACTATATGACAATTTATAAATGCACCATTTCCATGGCAGTCTGGTGTATTGTTGTAATGTCACTAAGTCAACGTTTGTGTTTTGTTGTAACCTCGTGTGTGCTGCTAGTATGCTATTCTTGAAATAGTTGATTCAGCATACTCCATAGGCATCCTCCATAACCATATATGGAAAAAGAGAATTATAACAACACAATAAAAACCCACTTATGCTTTTAGATCCACACAAACTTGCATGACTCCAGTGCAGTGAATGCACATTTATGCTCATGCAATATAATGCAAAAGCTAGTCAAATAATAGCTGGCtattaggacttcaggttgaagCAGACAGGGAGAGTCATTTGTCATACACTGTTAACATGATTTACCACCGAGGGTTGAATGTCCCAACTGAATGATTCCCACGAGGACAAAAGAACAGATCTAAATGATCTAGGACTTTAAcagtgtcccaaatgccaccctcttccctatatagtgcactacttttgaccagagccctatggggtcttggtcaaaagtagtgcactatagggtgcCTATAGGTgcctatagggtgccatttgggacgccatTTATTCTTTAACTCATTGTACATCGCACATCCTCTGAGCTAACCATGTATCCGAATAGATATTGCTGAGGATCTTGTTTTCCATTTTGCTGCTATGTTCTAGATTTTATTAGATTTATAATCTTGATCATAATTGGCCAAAACTCAGCAATTTATTATCTGGCCATTATCTGCCCTGGCAAACCCAAACACCTTGAGGTGTGTCCGATTTAGATATTTATATTCATAAACCTAGGGTGTTACTTTATGCCATTCATCTAGTGCCAtcaacagagagacagtgttatacCTTCCATTTTTGCCATGCTAATCTAAGAACGGTTAACACATGTCATTTAGTAAGTACAGTTAACACATGTAATTAAACCTGGTACTTCATTAATTTACATAGTCCCTTCTGGTATACAAGGCCACTTTGGAACCCTGTATGTTACTTTTCTCTCTGTATGTCAACGTAGATGGTGAGAGTTAACAATTCAGATTGCTTTTCCTCTGAAATAAACTTTAATTTGCTTGGTGTAGATTTTTGGACACATCAGAAGGGATGGTTCATTCATTAAGTacatgttttgtttgtgtttttattttattttcaatttgTTCATTCAGATCCTTGTGTCTGTAAGTTCAGGCAGAACACCACTGTAACATGTATGCTCTCTTTTCTCTGAAATTAAATTAAACTTCCATTGAATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2183267 lncRNA downstream 15208 17937713 ~ 17948050 (-) True G1908999
TU2183262 lncRNA downstream 28677 17933975 ~ 17934581 (-) True G1908996
TU2183191 lncRNA downstream 109152 17847931 ~ 17854106 (-) True G1908932
TU2183188 lncRNA downstream 119142 17837139 ~ 17844116 (-) True G1908929
TU2183122 lncRNA downstream 186398 17771194 ~ 17776860 (-) True G1908874
TU2183294 lncRNA upstream 28043 18001233 ~ 18007350 (-) True G1909024
TU2183663 lncRNA upstream 78664 18051854 ~ 18052194 (-) True G1909345
TU2183677 lncRNA upstream 112857 18086047 ~ 18086265 (-) True G1909357
TU2183731 lncRNA upstream 192681 18165871 ~ 18166177 (-) True G1909407
TU2183732 lncRNA upstream 196979 18170169 ~ 18170403 (-) True G1909408
XM_021581798.2 mRNA downstream 36324 17923724 ~ 17926934 (-) True LOC110503460
XM_036962085.1 mRNA downstream 103862 17855290 ~ 17859396 (-) False wu:fc27b11
XM_036962086.1 mRNA downstream 103889 17858253 ~ 17859369 (-) True wu:fc27b11
XM_036961082.1 mRNA downstream 112829 17849473 ~ 17850429 (-) True LOC118944000
XM_036961081.1 mRNA downstream 119594 17842708 ~ 17843664 (-) True LOC118943999
NM_001124487.1 mRNA upstream 16039 17989229 ~ 17999347 (-) False ca4
XM_021581481.2 mRNA upstream 16039 17989229 ~ 17999541 (-) False ca4
XM_021581482.2 mRNA upstream 16039 17989229 ~ 17999629 (-) True ca4
XM_021582539.2 mRNA upstream 64398 18037588 ~ 18042701 (-) True LOC110503907
XM_036961748.1 mRNA upstream 88807 18061997 ~ 18068516 (-) False LOC110503908
TU2182802 other downstream 684848 17277807 ~ 17278410 (-) True LOC118944080
TU2182093 other downstream 1802032 16158846 ~ 16161226 (-) True G1907951
TU2182062 other downstream 1830696 16131990 ~ 16132562 (-) True G1907922
TU2181985 other downstream 1918953 16036987 ~ 16044305 (-) True LOC110503846
TU2180125 other downstream 2450165 15512359 ~ 15513093 (-) True G1906218
TU2183897 other upstream 458834 18432024 ~ 18434792 (-) False LOC110503924
TU2183901 other upstream 458834 18432024 ~ 18434792 (-) True LOC110503924
TU2184703 other upstream 994872 18968062 ~ 18973230 (-) False LOC110503944
TU2184704 other upstream 994872 18968062 ~ 18973230 (-) True LOC110503944
TU2184852 other upstream 1187259 19160449 ~ 19162158 (-) True G1910398

Expression Profile