RNA id: TU2183239


Basic Information

Item Value
RNA id TU2183239
length 819
lncRNA type read_through
GC content 0.35
exon number 2
gene id LOC110503905
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 17963258 ~ 18015869 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACAATTTACTGAAGTTAAAATCTTTATTCCCTATAAGGTGAACTATTTTTGCCAAGAGCCCAAAGagtctagtcaaaagtagtgcaCTATAGGTgcctatagggtgccatttgggacgccatTTATTCTTTAACTCATTGTACATCGCACATCCTCTGAGCTAACCATGTATCCGAATAGATATTGCTGAGGATCTTGTTTTCCATTTTGCTGCTATGTTCTAGATTTTATTAGATTTATAATCTTGATCATAATTGGCCAAAACTCAGCAATTTATTATCTGGCCATTATCTGCCCTGGCAAACCCAAACACCTTGAGGTGTGTCCGATTTAGATATTTATATTCATAAACCTAGGGTGTTACTTTATGCCATTCATCTAGTGCCAtcaacagagagacagtgttatacCTTCCATTTTTGCCATGCTAATCTAAGAACGGTTAACACATGTCATTTAGTAAGTACAGTTAACACATGTAATTAAACCTGGTACTTCATTAATTTACATAGTCCCTTCTGGTATACAAGGCCACTTTGGAACCCTGTATGTTACTTTTCTCTCTGTATGTCAACGTAGATGGTGAGAGTTAACAATTCAGATTGCTTTTCCTCTGAAATAAACTTTAATTTGCTTGGTGTAGATTTTTGGACACATCAGAAGGGATGGTTCATTCATTAAGTacatgttttgtttgtgtttttattttattttcaatttgTTCATTCAGATCCTTGTGTCTGTAAGTTCAGGCAGAACACCACTGTAACATGTATGCTCTCTTTTCTCTGAAATTAAATTAAACTTCCATTGAATC

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0007420 brain development biological_process
GO:0005737 cytoplasm cellular_component
GO:0019904 protein domain specific binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2183267 lncRNA downstream 15210 17937713 ~ 17948050 (-) True G1908999
TU2183262 lncRNA downstream 28679 17933975 ~ 17934581 (-) True G1908996
TU2183191 lncRNA downstream 109154 17847931 ~ 17854106 (-) True G1908932
TU2183188 lncRNA downstream 119144 17837139 ~ 17844116 (-) True G1908929
TU2183122 lncRNA downstream 186400 17771194 ~ 17776860 (-) True G1908874
TU2183663 lncRNA upstream 35985 18051854 ~ 18052194 (-) True G1909345
TU2183677 lncRNA upstream 70178 18086047 ~ 18086265 (-) True G1909357
TU2183731 lncRNA upstream 150002 18165871 ~ 18166177 (-) True G1909407
TU2183732 lncRNA upstream 154300 18170169 ~ 18170403 (-) True G1909408
TU2183786 lncRNA upstream 237518 18253387 ~ 18253697 (-) True G1909461
XM_021581798.2 mRNA downstream 36326 17923724 ~ 17926934 (-) True LOC110503460
XM_036962085.1 mRNA downstream 103864 17855290 ~ 17859396 (-) False wu:fc27b11
XM_036962086.1 mRNA downstream 103891 17858253 ~ 17859369 (-) True wu:fc27b11
XM_036961082.1 mRNA downstream 112831 17849473 ~ 17850429 (-) True LOC118944000
XM_036961081.1 mRNA downstream 119596 17842708 ~ 17843664 (-) True LOC118943999
XM_021582539.2 mRNA upstream 21719 18037588 ~ 18042701 (-) True LOC110503907
XM_036961748.1 mRNA upstream 46128 18061997 ~ 18068516 (-) False LOC110503908
XM_036961750.1 mRNA upstream 46128 18061997 ~ 18068516 (-) False LOC110503908
XM_036961747.1 mRNA upstream 46128 18061997 ~ 18069154 (-) False LOC110503908
XM_036961746.1 mRNA upstream 46128 18061997 ~ 18069242 (-) False LOC110503908
TU2182802 other downstream 684850 17277807 ~ 17278410 (-) True LOC118944080
TU2182093 other downstream 1802034 16158846 ~ 16161226 (-) True G1907951
TU2182062 other downstream 1830698 16131990 ~ 16132562 (-) True G1907922
TU2181985 other downstream 1918955 16036987 ~ 16044305 (-) True LOC110503846
TU2180125 other downstream 2450167 15512359 ~ 15513093 (-) True G1906218
TU2183897 other upstream 416155 18432024 ~ 18434792 (-) False LOC110503924
TU2183901 other upstream 416155 18432024 ~ 18434792 (-) True LOC110503924
TU2184703 other upstream 952193 18968062 ~ 18973230 (-) False LOC110503944
TU2184704 other upstream 952193 18968062 ~ 18973230 (-) True LOC110503944
TU2184852 other upstream 1144580 19160449 ~ 19162158 (-) True G1910398

Expression Profile