RNA id: XM_021582554.2


Basic Information

Item Value
RNA id XM_021582554.2
length 5662
RNA type mRNA
GC content 0.54
exon number 26
gene id LOC110503920
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 18311939 ~ 18355479 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGACATCTTGTGGAGGAGAAACAACAGTGACCCGGAAGATCCGTCACACACGGTCACTGCCGACGACATCTTTCTGTCACAGACCAATGTTATCAAGATGGCGTTACGGCCAGGATCTGGGGGAGGTGGCAGTTTTATTTATCCTGTTGGAGGGGGCCTGGGACCGCCACAAGGCATGATGCCcatacagcagcaacaacaacagcagggTTTCCCTGGTATGGTCCAAGTCCAAATGCAGCCCAACATGCAAGGGATGATGGGAATGAACTTCGGAGTCCAGATGCCTCCTGGTGCCATGCCTATgcagGGTGGGATGGCCATGGGGATGCAGGCCCCTGGGATGCAGTTCATGGGCCAGCCGCAGTTCATGGGCATGAGGGGTCCCGGGCCCCAGTACACTGCCGACATGCAGAAACAGATGGCTGAGGAACACCAgaagcgtctggagcagcagcagcggatgctggaggaggacaggaagaggaggcaGTTTGAGGAGCAGAAACAGAAGCTGAGGCTGCTGAGCAGCGTCAAACCCAAGGGACAGATGGGGGCGAGTCGGGACGACGCGCTGGAGGCCATCAAAGGCAACCTGGACGGGTTCAGCAGAGACGCTAAGATGCACCCCACGCCATCCTCACACCCCAAGAAGCCAGACTCATCGCCATCCCACTCTTCTGTCacctctcactcccccccccctgcTTTTGATGATGACGAGTTTAGTGACTTTATGCAGGGGCCCGTAGatgcctcttcctccttcccttcctcctcctccctcttcccctcctcctcccaggtccatccCCAGTCTTTAGACCCAGTTCGTAGTCAGAGAACCTCCTCCCCCCCCTCCTTCCAGGTCCATCCCCAGTCTTTAGACCCAGGTCCTGGTCAGAGATcctccttccccccctcctcccaggCCCATCCCCAGTCTTTAGACCCAGGTCCTGGTCAGAGATCCTTCTCCCAGTCCCTCCCTGCCTCTGTGTCCATTCCTACTGCCACCCAACACTCTACTGGAAACTCCAGCTCTCAATCTGCATTTCAAGGCCCGTCCCTGGAAGAGAAACTGTTCTCCTCGTGTGATTTAACGGCTCAAAAGAAGGCCCAGGTTAGCTTTAAGTCCCAGAGGACCCTGGCCCCTTACAGAGCTACAGTCTCGGCCCAGTTTCACTCCAGCACCAAGGCCCGGAACTGGGCTGAGGCTCCTGGGGACCTGAGTTCTGCCTTCACTATAGAAACACCACAACCAGAGGCACCAGCACAGGGGCCCACAGCCCCCTCACCGCAAGCCGACACCCGTCCTCCCCAAACCAGTAGTGACGGTGCAGGTGTTGGTGGGTACCCTCAGCCCATGGTACCAGGCTGGCTCTACAACGACAGCCTCATCCCAGaGATGTTCAAAAAGGTCCTGCAGTTCACCATGACTCCGGGGGGCATCGACACAGCCAAGCTCTACCCCATCCTGATGTCCTCAGGCCTGCCCAGGGAAGCACTGGGCCAGATCTGGGCCTCAGCCAATCGCACCACACCTGGCATGCTGACCAAGGAGGAGCTCTACACAGTCCTGGCTCTGATTGGTGTGGCACAGAGTGGTCTTCCAGCCATGAATGTGGAGATCCTGAGCCAGTTTCCCTCTCCCCCGGTGCCCAACCTGCCTGCCCTGGCCATGGCTATGGCCACTGTCATGCCCCAGCAGCACCAACACCAGCAGCCCATGATGACTCAGCCCCCTGTCCCCGTGTCCATGGCCATGCCTACCCCAGCACCAGCAGTCATGGGCAGGGCTCCTCCTGGAGCTCCTCTACCCTCTGCCCAACTTCCCACCAACTTCATCACCAACTTCCCACATTTGCAGGGGAAAGCAGACGATGATGACTTCCAGGACTTCCAGGAGGCCCCCAGGGCAGGAGGAGGGGACCAGTCCTTCACTGAATTCCAGGGGGAGTCAGGGCAAACCTTCCCCACCAACACACCTTCTCTGCACCAGAACAGtgctCCTGCCATTCTGACTCCGGTCTCTGGCTCCTCCTCGTCATCTTCTGATAAGTATGCTGTCTTCAAGCAGCTCTCGGTGGAGCAGCCTCCAGAGCCCTCTCAGCCTGCCTCAGATTTTGGCGGAGACAAATACAGTGTGTTCCGACAGCTAGAGCCACCAGGTGACAGGAAACCAGTAGTTTCCGATGGGGACAGCAGCTCTCACGACTCCAGGGAAGGATTTGCCGATTTCAAGTCTGCCAGCGTGGATGATGGCTTCACAGACTTTAAAACCTCCGACAGCATCTCTCCACTAGACCCTCCAGACCAGGCCAAGATGTTTCAGCCAGCCTTCCCTCCTGCTTTCCCTAACTCTCAGTCTCTACCGCAACTACAAAATCAGATACATCTACATCAACAaccagcagtctctctctctcagcctaaAAACCCTCTCAACATGGCTGACCTGGATCTCTTCTCCTCTATGGCTCCCTCAGCCCCCACCCCTGCTGAGACCAAGCCCAGTCCCTTCCCCTCTGTGCCCCCCTCCCTAGTGCTCCCACCAGGTGGGGCTAAGCCCCCTGGGGGAGGGGCTGAGGACTTTGGCAACTTTGCCCTCTTCGGCCCCGCCTCGTCTTCTGAGGCTGTTCCTATTGGCACTGCTCTGGGAGGGGGCGTGGCAGCATCTCAGGATGACTTTGCAGACTTCATGGCTTTCGGCAGCTCTGGGGGGGAGGCCAAGGGTGAGGGGTTGAGGTCTGGAGAGGGCagggcagaggggagaggagagaccaccATCGCTCCACAGCTGCCCCAGCAGGGCTCTGACAAGTACGACGTGTTCAAGCAGCTGTCTCTGGAGGGAGGCTTGGCGTACGACGACAACAAGGAGAGTGCCGGCGGCTCGTTCTCGTCACTCAGGAGCGAAGCAGATGACTTCGCCGACTTCCAGTCATCCAAGTTCTGCACGGCGCTGGGGGCCTCGGAGAAGAGCCTGGTGGATAAGGTGTCAGCCTTCAAACACGGAGGCAAGGAGGACTCGGCTTCAGTTAAGTCCCTAGACCTCCCATCCATCGGGGGCAGCAGCGTGGGCAAAGAGGACTCTGAGGACGCTCTGTCAGTGCAGCTGGACATGAAGCTGTCGGACATGGGTGGAGACCTGAAGCACGTGATGTCAGACAGCTCTCTGGACCTGCCGGGTCTCTCGGCCCACCAACCCCCCGCCTCAGAAGGAGACGACGTAAAGTTTAACCCCTTCGGAACATCAGCAGTCAGCAGCGTGGCCAGCTATGATTGGTCAGAAAGAGAGGAATGCCTGTCCGCTCAGGATCAGGCCAAGAAGcatgtttcctcctctctcccctcagacgTAGTCCACAGGAAGGAGACGTCGTTCGGCAGCACAGAGAACATCCTCATCACACACATCGCCCAGACTAAGATCACCACCTTCTCAACAGAGGATAGTGTGTCGACCGACAGCAAGTTTGAGGCCTTCGCTGACTTTGGCTCTTGTGAGCCGGAAGGTTTGGGTGGGGATGAGAATGATGACTTTGGGGACTTTGCCAGCACGGTGTCAGCGAAGTCAGACTCCCCCGCGGCAGCGGCCGAGCTGGACTCCGAGGGGAACCTGAACGAGGCCTCGGATGAGTTCAGGGCCTTTCAGGGGGACAAGGCCAAGTTTGGGAAGTCTGACTTTTTGAAGGCCAGCTCTCAGACCAAGGTCAAGTCCAGTGAAGAGATGATCAAGAGCGAACTGGCCACCTTTGACCTCTCTGTACAAGGCTCCCACAAACGTAGCCACAGTTTGGGGGAGAAGGAGATTGGGCGCTCGCCCCCCACCCCGGCCCCGGAGCAGCCCTTCAGAGACCGCTCCAGCACCCTGAGTGAGAAGAAGCCTGCCCTGCCCGTCATCAGAGACAAGTACAAGGACCTGACTGGGGAGGTGGAGGAGAGTGAGCGCTATGCATATGAGTGGCAGAGGTGTCTGGAGAGTGCTGTACAGgtCATCATTAAAGCCAACAACACCCTAAACAGCATCAGCTGCTCTACTGTTTGCACTGAGGTCATCCAGTCTGCTCAGGGCATGGAGTACCTGCTggGTGTGGTGGAGGTGTACCGCGTGACCAAGCGTGTGGAGCTGGGTATCAAGGCCACAGCCGTGTGTTCTGAGAAGCTGCAGCAGCTGCTGAAGGACATCAGCCGCGTCTGGAACAACCTCATGGGCTTCATGTCCCTGGCCAACCTGGCgCCTGATGAGAGCTCGCTGGACTTCTCCTCCTGTATCCTGAGACACGGCATCAAGAACGCCAAGGAGCTGGCCTGTGGGGTGTGCCTGCTCAACGTGGATTCACGCAGCAagAGCAAAGAAGAGACAACTATTGGACGTCTGTTTAAAAGAGCACTGGCTAAAGACCATGACAagaggttaaggGCTTTCAACTCAGAGACGGACAACTTCAAGCTGCCGTACGGGGGCCACCAGTACCACGCCAGCTGTGCCAATTTCTGGATTAACTGCGTGGAGCCCAAACCGCCGGGCCTCATTCTGCCCGACCTGCTCTGAACTGCAGACACCGCTGCCATGGCAACGGGCGCCAGaggtACTCTGTGCTCTTTGCGGTGGTGAAGAAGTGCAAATCTGCTAGTTTGTACAAATTCAAGGCTTGACACAGTAAAGACTATTCTGTATCATAATGTATTGTAAAATTATACTTTATAAATAGTgtcattttctctcttttttttcattGTCTGGTCTCATATACAGTAGAATGCAAGTTGGCCTTTTAGCATTGATGCTTTTGCGACTTCCCTGGCAGGATTTATTTTGGCAAACATTATTCAGATAATTAACCAATGTTGTGCTACGGTAACCCAAAGGAGGTCTAGTCCCTATGTCAGAGCAGGAGAAAATGTGGACAGTTATATGAATGGGGTAATGGGTGTCAACATTTTCTGTACTGCACTCTTTCTGTGACTCAACAAGTCCATAACAAACTATTAAAACTGTGCAATATACTACTAATGAAGGAACTTGGAGACAAACTGAAGTGTAAAGCTATCTGTCATTTCCCTTGATTGTCACTTGTTGCTTGGTTACTCTTTAATGCTTGAGCTCTGCAAAGAAAGAGGGACTTTATTGGTGTTTGGGTCTTAAAGTAGtattttctcctctctgttcttctcgaATCAGGGTTGTGGTATCATCACACTGCTGGAACTGAATCCATTTTAAGGTCGGGTCTCTAAAAGGAGAGTCTATGGTTGCTAACATTTGAATTGATATTTCACTTTTTAAGTATTGTGTGACATTGACTGCTTTTTAATGTCTTTGTATTGTTTGATAAGGACTGCTTTATCTAAATGAATGTCCATGTCCTGTTTGAACATTTTTGTGACATTGGGGATTGAAAGGGGGTCTTAATTCTTGAAGATTGTTGGCTGTGGGTTTTGTTTTTCTGTCTTGCTGTGCCAGTGTATATATACTCGCGCTGTTGACGGGGATGTTTTTGCAGACCGAAGTCTTGAATGAAGTCCACTGTGATTATGGACTATTGCAGCAGCTCTTTGTGAGGATTACAGTATCATAGTATTGGAATTGCAATAACTAACTGTAATGTGAAGTGTTGACATTTACATAAATAATACATTGATGCATAAATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2183824 lncRNA downstream 1453 18309787 ~ 18310486 (-) True G1909484
TU2183840 lncRNA downstream 23395 18286714 ~ 18288544 (-) True G1909496
TU2183837 lncRNA downstream 25764 18283361 ~ 18286175 (-) True G1909495
TU2183797 lncRNA downstream 44291 18267313 ~ 18267648 (-) True G1909470
TU2183795 lncRNA downstream 47082 18264654 ~ 18264857 (-) True G1909468
TU2183936 lncRNA upstream 101057 18456536 ~ 18457218 (-) True G1909572
TU2183885 lncRNA upstream 206463 18561942 ~ 18563550 (-) False LOC110503933
TU2183887 lncRNA upstream 209181 18564660 ~ 18565902 (-) True LOC110503933
TU2184256 lncRNA upstream 318600 18674079 ~ 18674568 (-) False G1909868
TU2184257 lncRNA upstream 318600 18674079 ~ 18674678 (-) True G1909868
XM_021582545.2 mRNA downstream 230514 18075216 ~ 18081425 (-) True LOC110503909
XM_036961744.1 mRNA downstream 242379 18061997 ~ 18069560 (-) True LOC110503908
XM_036961745.1 mRNA downstream 242669 18061997 ~ 18069270 (-) False LOC110503908
XM_036961749.1 mRNA downstream 242678 18061997 ~ 18069261 (-) False LOC110503908
XM_036961746.1 mRNA downstream 242697 18061997 ~ 18069242 (-) False LOC110503908
XM_021582570.2 mRNA upstream 7616 18363095 ~ 18383183 (-) False LOC110503921
XM_021582572.2 mRNA upstream 7616 18363095 ~ 18383186 (-) False LOC110503921
XM_021582567.2 mRNA upstream 7616 18363095 ~ 18383187 (-) False LOC110503921
XM_021582569.2 mRNA upstream 7616 18363095 ~ 18383189 (-) False LOC110503921
XM_021582568.2 mRNA upstream 7616 18363095 ~ 18383190 (-) False LOC110503921
TU2182802 other downstream 1033529 17277807 ~ 17278410 (-) True LOC118944080
TU2182093 other downstream 2150713 16158846 ~ 16161226 (-) True G1907951
TU2182062 other downstream 2179377 16131990 ~ 16132562 (-) True G1907922
TU2181985 other downstream 2267634 16036987 ~ 16044305 (-) True LOC110503846
TU2180125 other downstream 2798846 15512359 ~ 15513093 (-) True G1906218
TU2183897 other upstream 76545 18432024 ~ 18434792 (-) False LOC110503924
TU2183901 other upstream 76545 18432024 ~ 18434792 (-) True LOC110503924
TU2184703 other upstream 612583 18968062 ~ 18973230 (-) False LOC110503944
TU2184704 other upstream 612583 18968062 ~ 18973230 (-) True LOC110503944
TU2184852 other upstream 804970 19160449 ~ 19162158 (-) True G1910398

Expression Profile