RNA id: XM_021582570.2


Basic Information

Item Value
RNA id XM_021582570.2
length 4328
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC110503921
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 18363095 ~ 18383190 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCCCACTAATTACCATGTTTTATATTCCCTGCCCTCTGAAAGCATCATGGCAAATTATATCACTCTCCTCAAATGGGAAGTGAACCAGCTTCTCTGAGCAGGTGTCAGGAGTAGGACATTCACATTAACACTGGAGCACGGGAGGAAGAGAGATCGAACTTTTTTTTTGTACTTTCTAGTTTttattctccccagcctccctttTAGTTCAgaatttaacttttttttaatgTTCTCGAAAATGGTGTCCAAGTTGACATCTCTCCAACAGGAGCTCTTGAGCGCCTTGTTAGATTCCGGAGTTACCAAAGATGTTCTGATCCAAGCGTTGGACGATATGGATCCTAGCCCGAATGGCTTTGGAGTTAAGTTGGAGAATCTACACATGTCTCCGCCAAGTTCTAAAATCAACGGAAATGATTCGGATTCGAAGCCGGTATTTCTAACGTTGAGCAACGGGCACGGTAAGGGCAAACTGTCGGGAGACGAGGGGTCCGAGGACGGGGATGATTTCGATACCCCACCGATACTAAAAGAACTCCAGTCGCTTAACACGGAGGAAGCAGCGGAGCAGAGGGCAGAAGTTGACAGAATATTAGCTGAGGACCCGTGGCGTGCCGCTCGCATAATTAAAGGCTACATGCAACAGCACAACATACCACAGCGCGAGGTGGTGGACGTAACCGGACTAAATCAGTCTCACCTCTCACAGCACCTCAACAAAGGCACGCCCATGAAAACTCAGAAGCGAGCGGCGCTCTACACCTGGTATGTCAGGAAACAGCGGGAAGTTCTCAGACAATTCAACCAGGCAGTGCAAGGTTCTGTCAACAACATGACTGACAAAGGCAGTCAGGATCAGGTGCTGTTTTTCTTCCCAGAGTTCAACCCTCCTGGTCAGGGTATGGGGCAGCAAGGGGAGGAGGTGGGCTCTGAACCTTCCTGCAAGAAAATGAGACGGAACCGTTTCAAATGGGGGCCTGCATCCCAACAGATCCTCTACCAGGCCTATGAAAGACAGAAGAACCCCAGCAAAGAGGAGCGAGAGGCTCTGGTGGAGGAGTGCAACAGGGCTGAGTGTCTCCAGAGAGGGGTGTCTCCGTCTAAAGCTCATGGGCTGGGCTCTAACCTGGTCACTGAGGTACGGGTCTATAACTGGTTTGCCAACCGACGTAAGGAGGAGGCCTTCCGTCAGAAGCTGGCGATGGACGCCTACCCCATACCCATCCACAGCATGAACCCTCTCCTGTCTCACAGCCACAACTCCCCACACCACCACAGCTCCCAGACCAGCGCATCCCCCCCTAGTAAGATGCAAGtgcGGTACAGCCAACAGGGACCCAGTGAGGTCAGCTCCTCGACGACCATCAGCCACCATGGCAGCATGTCGACCAGCCAGTCGGTGTTACAGCAGGTGTCTCCGGGTGGCTTGGACCCCAGCCACAGTCTGCTGTCACCTGATGCCAAGATGatgtctGCGTCAGGTGGAGGCCTGCCACCTGTGAGCACGCTGACCAACATCCACAGCTCCCACCATACACACCAGCAGACACAAAACCTCATCATGCCTCTCTCTGGAGTCATGACCATTGCACAAAGTCTGAACACGTCGCAGTCCCAGTCGGTGCCAGTGATCAACAGCGTGGCAGGGAGCCTTGCAGCTCTGCAGCCGGTGCAGTTCTCCCAGCAGCTCCACAGTCCCCACCAGCATGGCCTGATGCAGCAGTCCCCCAGCCAGCAGCCTTTCATGGCCACCGTGACTCACTCACACATGTACCCTCACAAGCAGGAGCCCACGCAATATTCCCACCAGTCACGGTTTCCCTCAGCCATGGTGGTGACAGACGCCAACAGCCTCAGTACTCTCAGCTCCATGTCATCCAGCAAACAAGATTCTACCGTAAACAAGATGGTGCAACTGGGGGGTCTCTCCTGGTGTCCTCTTCAAGCCTGGTGAGAGTACACACCTGACTTCCTTGGTGCCTAGCAACAGGAGCACATTTTTCCACCCACTCACTGTGGTAACCATGACAACTCCTAATAACTGGCAACAGCGCACTGGACGATGAGTCAGTCAACAAATCCAGAGCAGCGGTGGCGGagggcgagaggagaggaggagtgagagaaggggagagaaatgCACATTGCAGGTTTTGCGTTAATAGACACCCAAATGAAGGGAGGAGAAACTGGATTTCCCCTGACATACAACAAGGATGTATGATTTTTCACTACAAACACAATCTTGAGAAAACATTATTCATTTCTCTATCTTTTCATTGAAAATGTGTGCAAATGACAAGTGATCGCTTCTATGTGGCCAATCATTTGTGACATTATCAAGGAACAAAACAAATGGATCTTCACATTATGCCTTACATGCTGTGGTATGTAagaataggactggtggagtggATGTCCATGAAGAACTAACATGTTACTGTGATCTGATGTGGAAAGATGAAGGCCTATGGAGGCTGGGGTGAGAGGACACAATCTGCCTCAGTCGGCCCAGCTATGTTGGGCTGTGGTGGGGATGGACTGTATGGGGGACTGGGTGATTCCCTCTGGCATGGGGCCCGGACTCATGATGGGCAGATCTGAATAATCTGATCCccactatactgtatattatcAACGGCAATGCACAACCATCAGAACTACTGGATGACAATCATATTAACTTTGTCCTGAGCAACTGTATAGGTTTTTGTAGATAGATATTTCATACATGTACATGCCTGTTCTGTTTGAAGGAGTCTTCCATGTTTGTTTTTCATTATGTGATTTTCTGTACTGAACAGTCAATAGTGCAGATAATTATAACTTTGTTCATGTGTCTAAAGGATTTCAACATTTGTCATTCCCAAACACGGGGGAAATATAATAGacaatatatatgtattttttatttggttCCAATTGTAAACTGTGATTGAAAGATATGACAATCTTTAGAACTAAAGGACTACGCAATGTGCATATGAAGTGCATATGAAGTGCATATGAAGTGCATATGAAGCCTCAGAAGACTGAAACGTGTACAGTACTCCACAAACAGAAGACCGAGGGATTTCTGAGATGCACCATTACTCTATGAACTTAGTGCCCCTCATGTTGTTTCTTTCTGTTGTCAGAGCTGCCCGCAACACGacacaaaacaataaaccaaaatgttcaattatttaaaaaaaaatatatgtgtacagtagatactgtatataaagtAGTCAGAAATTCAGTTGGACACTTTGGGTGTTTTTCTTTCACCCATTTCCCATGTTTCGTTCTGAAGAGAGAGTCAGTGTGCTATGATATCATAAACAAAGTCTGCCCTGTGGGCGTGTTGACTCACATATTCACTGTATGCCTTCAAACCCATTTATAGGGTttgtcccaaagggcaccctattccctatatagtacactaccctTGGTtaaaacgtagtgcactatatagggaatagggtgccatttaggatgcacacATTGTCCCAATTCTAGGGTGGCCCATGCCTGCCTGCCTAGGAGACCTCTCTCTGACTGATGTTTGCTCATAGGGTTCAGGTGAATTTCAGGAATGAGCCCTCCCAggctccctcccctctcctcccacttcCTCATTCCCAACGTTTCCTAATTTAAAGACACATATGGAATTGGACCCTTTTTTGTTATTCTCCTTTATAAATCATAAAAGCCCCTCCCCTTGACAATGACAATATTTACAGGTATTTGCAAGCAAAACAGTGATATGAGTCTTGTAATTTGTGAATGGGTGGAAGATGAAAGCATCTATTGTTGTGACAGCAACCAATGTAATCAGGCTGGATTCCACAGAGGTTGAGAAATGTTATGGAGAGTTGGATACTCAGCCGCACTTAGTTACTTATGAAATCCCAATCCACCAGAGAGTTCCAGAAAAACAAGCACAGGGTACAAACAATCAGGTTTTTATACTGAACATTTGTATAGTCTGCATTTGACTGCGTGTTTTCTGAATAATTATTTGACTTCATATTTTCTAAATTGAAGTCATACCCTCTCCACCTCCATATTTTGGTTGGCACATACTGTACAGACTCCCTTTCAATAGGTCACTATCTTGTTATTACTTGTACTACCTTGTTTCAATCTGAACATACCCACTGCCATCTAATCAGAGGGCATGCATGTCCACTTTTAACTGTAGATGACAGGCAAAGACAAGTTATTTTCTCTTTGACGTATTTTTGTATAAAATGGAAATCAATCTtttaaaatcattatttatacTTTCTGAGAAAATGTTGATATTCAAGTAAAGCTTTTTTTCAAAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2183824 lncRNA downstream 52609 18309787 ~ 18310486 (-) True G1909484
TU2183840 lncRNA downstream 74551 18286714 ~ 18288544 (-) True G1909496
TU2183837 lncRNA downstream 76920 18283361 ~ 18286175 (-) True G1909495
TU2183797 lncRNA downstream 95447 18267313 ~ 18267648 (-) True G1909470
TU2183795 lncRNA downstream 98238 18264654 ~ 18264857 (-) True G1909468
TU2183936 lncRNA upstream 73353 18456536 ~ 18457218 (-) True G1909572
TU2183885 lncRNA upstream 178759 18561942 ~ 18563550 (-) False LOC110503933
TU2183887 lncRNA upstream 181477 18564660 ~ 18565902 (-) True LOC110503933
TU2184256 lncRNA upstream 290896 18674079 ~ 18674568 (-) False G1909868
TU2184257 lncRNA upstream 290896 18674079 ~ 18674678 (-) True G1909868
XM_021582553.2 mRNA downstream 7616 18311939 ~ 18355479 (-) False LOC110503920
XM_021582554.2 mRNA downstream 7616 18311939 ~ 18355479 (-) False LOC110503920
XM_021582555.2 mRNA downstream 7616 18311939 ~ 18355479 (-) False LOC110503920
XM_021582557.2 mRNA downstream 7616 18311939 ~ 18355479 (-) True LOC110503920
XM_021582556.2 mRNA downstream 7617 18311939 ~ 18355478 (-) False LOC110503920
XM_021582576.2 mRNA upstream 49285 18432468 ~ 18434772 (-) False LOC110503924
XM_036961188.1 mRNA upstream 49285 18432468 ~ 18434798 (-) False LOC110503924
XM_021582575.2 mRNA upstream 54355 18437538 ~ 18447553 (-) False LOC110503923
XM_021582573.2 mRNA upstream 54357 18437540 ~ 18447553 (-) True LOC110503923
XM_021582577.2 mRNA upstream 67491 18450674 ~ 18455598 (-) True LOC110503925
TU2182802 other downstream 1084685 17277807 ~ 17278410 (-) True LOC118944080
TU2182093 other downstream 2201869 16158846 ~ 16161226 (-) True G1907951
TU2182062 other downstream 2230533 16131990 ~ 16132562 (-) True G1907922
TU2181985 other downstream 2318790 16036987 ~ 16044305 (-) True LOC110503846
TU2180125 other downstream 2850002 15512359 ~ 15513093 (-) True G1906218
TU2183897 other upstream 48841 18432024 ~ 18434792 (-) False LOC110503924
TU2183901 other upstream 48841 18432024 ~ 18434792 (-) True LOC110503924
TU2184703 other upstream 584879 18968062 ~ 18973230 (-) False LOC110503944
TU2184704 other upstream 584879 18968062 ~ 18973230 (-) True LOC110503944
TU2184852 other upstream 777266 19160449 ~ 19162158 (-) True G1910398

Expression Profile