RNA id: TU2183897


Basic Information

Item Value
RNA id TU2183897
length 1689
RNA type TUCP
GC content 0.42
exon number 3
gene id LOC110503924
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 18432024 ~ 18434798 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGAAAATGCTCGCAACACAAGAAGAGGTGGCAGCGCAGCCAATCGCAGTGTAAGTGGCGTAGGGCAGCGTGTTAGGGCGGGGGAGGTATTTTGCAGGGCAGTTTCCCACATTTGCTTTGCGTAAAGCTTATAAAATAATTTGTCGCAGCACGATCTAGCAAGTAAACAAAGCTTTATATCCATCAAGGTGAGTTACCTGATCGCGAAGTGGAAAGTAGCTTAATCTCCTACACAAGGCATCATGACTGACAGGAAGGCAGTAATCAAGAATGCTGACATGTCAGAGGACATGCAGCAGGATGCAGTGGACTGTGCTACCCAGGCCATGGAGAAGTACAATATAGAGAAAGACATTGCGGCCTACATAAAGAAGGAATTTGACAAGAAGTATAACCCAACATGGCATTGCATTGTTGGGAGGAACTTCGGCAGCTACGTCACTCATGAGACAAAGCATTTCATCTACTTCTATTTGGGGCAGGTGGCCATCCTCCTCTTCAAGTCTGGCTGAGTTCTGTGAGGCCTGGAGTGCCTCTCCTCCCAACCTGGACTGTAATGCACTGGTGGCTGATGTCACAACTTCCCACACACTTCAAATATTAAAATGAAAACATACCATGATGATACACAACTGGCTGTGCGCAACTGCATGGACTGAGATGTACCATATTTAATGTGTATATGTTACAGTACAAATACTACTTTCACTAGTTGCCATAAAATGCAACTGGAAGAGATTTTTGTTAATGctgttctacattttgttataCTTAAGTTGTAAATGCTTTAACAGTGGCCTTTGATTGTATAATAAAGGAAAGCTAGAGAATGTAGTCGTGCATCTGCTTTACCCCAGAGAGCTGTTTTGTTTTGTGACTCCTGTGCTACTGTTTGAATGTGCTGAGTTGCTCCAGACCTTGAACTACTACAGCAGTTTGATGCCTGTATATTGCCAAAGGTACAAGTGAGACTAGCACAATCTATTTGGACACATCTTCCCAGATTTGCAATTGCTGTTATCGATCCCATTTCCCAGTCATATCTCATTGGTGTAATGTCTCATCTGGCATAGTGAGGGTGTTGGCAATGTCCTATTGCTAGTTGAGTTCCTATGTTAACATGCAGATGTTTTTAGAATGGTGGCTTGGTGGTTCCATTTGCAGAGGGACACCATCCATACTTGAACCTATTCTGTCTGTGCAACAAAGGACTCAATGTTGGCATTCAGGTCCTTTTGTAGACTTGCATATCTTAGTGACTTAACTGTCTGCTTTGTTGGTAGTTTCAAGTCTGTCTATGGTTTGATGCACATTTATATATGCTTTGCACAGGCATACCTCTTCTCTCTGCATGGGAGTACAACTGCACTTCACTGAAGGAATAATTGGgtttttggcaatgaggcccttttaTCTACATCCTCAGCCGACTGTGTGGAATCATTTGTTGAACAAGTACGAAGGAAGTTGGAGATCGTTTGGCAAGCAAACGCTAATTAGTGTTGGTGCAATCAATGGAAGTTGCTAGTAAATACCATACACTTCCAAACATTGCTTTAACGCATCTAAATTACATCTAGGAGTTCTGACTCTAGGGAATTAAACGAAGGGCCTCtgacaaaatcccaaagtatccctgtAAAGGTGCCCAGTAGAGTTTAACTTTAATTTAGTCAATAAAATGTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2183822 lncRNA downstream 20995 18326648 ~ 18411029 (-) True G1909483
TU2183824 lncRNA downstream 121538 18309787 ~ 18310486 (-) True G1909484
TU2183840 lncRNA downstream 143480 18286714 ~ 18288544 (-) True G1909496
TU2183837 lncRNA downstream 145849 18283361 ~ 18286175 (-) True G1909495
TU2183797 lncRNA downstream 164376 18267313 ~ 18267648 (-) True G1909470
TU2183936 lncRNA upstream 21744 18456536 ~ 18457218 (-) True G1909572
TU2183885 lncRNA upstream 127150 18561942 ~ 18563550 (-) False LOC110503933
TU2183887 lncRNA upstream 129868 18564660 ~ 18565902 (-) True LOC110503933
TU2184256 lncRNA upstream 239287 18674079 ~ 18674568 (-) False G1909868
TU2184257 lncRNA upstream 239287 18674079 ~ 18674678 (-) True G1909868
XM_021582568.2 mRNA downstream 48834 18363095 ~ 18383190 (-) False LOC110503921
XM_021582571.2 mRNA downstream 48834 18363095 ~ 18383190 (-) True LOC110503921
XM_021582569.2 mRNA downstream 48835 18363095 ~ 18383189 (-) False LOC110503921
XM_021582567.2 mRNA downstream 48837 18363095 ~ 18383187 (-) False LOC110503921
XM_021582572.2 mRNA downstream 48838 18363095 ~ 18383186 (-) False LOC110503921
XM_021582575.2 mRNA upstream 2746 18437538 ~ 18447553 (-) False LOC110503923
XM_021582573.2 mRNA upstream 2748 18437540 ~ 18447553 (-) True LOC110503923
XM_021582577.2 mRNA upstream 15882 18450674 ~ 18455598 (-) True LOC110503925
XM_021582578.2 mRNA upstream 19199 18453991 ~ 18465242 (-) True LOC110503926
XM_021582581.2 mRNA upstream 30607 18465399 ~ 18494797 (-) False LOC110503927
TU2182802 other downstream 1153614 17277807 ~ 17278410 (-) True LOC118944080
TU2182093 other downstream 2270798 16158846 ~ 16161226 (-) True G1907951
TU2182062 other downstream 2299462 16131990 ~ 16132562 (-) True G1907922
TU2181985 other downstream 2387719 16036987 ~ 16044305 (-) True LOC110503846
TU2180125 other downstream 2918931 15512359 ~ 15513093 (-) True G1906218
TU2184703 other upstream 533270 18968062 ~ 18973230 (-) False LOC110503944
TU2184704 other upstream 533270 18968062 ~ 18973230 (-) True LOC110503944
TU2184852 other upstream 725657 19160449 ~ 19162158 (-) True G1910398
TU2185002 other upstream 898049 19332841 ~ 19333225 (-) True G1910539
TU2185117 other upstream 1055925 19490717 ~ 19491608 (-) True G1910651

Expression Profile