RNA id: XM_021582577.2


Basic Information

Item Value
RNA id XM_021582577.2
length 1983
RNA type mRNA
GC content 0.48
exon number 9
gene id LOC110503925
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 18450674 ~ 18455598 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTTGGAGGTCACAGAGCTGAGTGGGATACAAGGGAGCAGCAGTCTGTCAGACAGCACAGTGGCTATCACTTCTGCAGTGAAAAAAGTGAATTCTGAATTAGCATCCTGTCAGGTTGTGTGATCGACCATCTCTCAGGATGACGCACCAGTTCCCAGCCCTCTCCAGTGGTCAGAAGAGGGAGCTCCAGGAGATTGCCCTTCGTATCGTCACTCCAGGGAAGGGCATCCTGGCTGCTGATGAGTCTGTGGGCAGCATGGGGAAGCGCCTTAACCAGATAGGGGTTGAGAACACTGAGGAGAACCGCCGGCAGTACCGCCAGATCCTCTTCAGTGCTGACGACCGCATCAACAGCTGCATCGGAGGAGTCATTTTCTTCCACGAAACGCTGTACCAACACGCTGACGACGGCACGCCCTTCGTCAAGATGATCAAGGACAGGGGCATCACTGTGGGCATCAAGGTTGACAAGGGTGTTGTCcccttggcaggaaccaatggaGAATCTACCACTCAGGGACTGGATGGGCTCTCAGAACGCTGTGCTCAGTATAAGAAGGACGGGGCAAACTTTGCTAAGTGGCGCTGTGTGTTCAAGATCAGTGAGGCCACCCCCTCTAAACTGTCCATTGAAGAGAATGCAAATGTTCTGGCTCGATATTCAAGCATTTGCCAGCAGCATGGGATTGTGCCTATTGTGGAGCCAGAGATTTTGCCTGATGGAGATCATGATCTGAGGCGTTGTCAGTATGTCACAGAGAAGGTCCTAGCTGCATTGTACAAGGCCATGTCTGACCATCATGTGTACCTGGAGGGCACTCTGCTCAAGCCCAATATGGCCACTCCTGGCCACAGCTGCCCCACAAAATACAGCGCAGAGGAGGTCGCCATGGCAACAGTCACTGCCTTGCGCCGCACCGTCCCTCCTGCTGTCACGGGAGTGACGTTCCTCTCTGGGGGTCAGAGTGAAGAGGAGGCCTCTGTCCACCTGAATGCCATCAACAACTGCTCCCTGGTGAAGCCCTGGACCCTCACCTTCTCGTACGGCCGAGCCCTGCAGGTGTCCGCACTCAAAACCTGGCGGGGACATAAAGAGAATGAGAGTGCTGCAACTGAGCAGTTTATCAAGCGAGCAGAGGTGAATGGCTTGGCCTGTCAGGGGAAGTACACTGGTGGCGGGGACAGTGAATCCGACCAGATCTATGTGGCCAATCATGCATACTAATGAGTCAGTGATTTCAGCTTTGGCCAACCAATAGCATAGTCCGCTGTCACTGCCATACCAATTGGCCAATCGCAggcatatctatctatctacaatCTGTATTCTAGGAGTTATATTATAGTTATTTGAATGTACACACTGGTAATTCAAAAAATGTTGCACATTGGTGGACACACTAGATATAAGGGTCTAATGAAATTAGTCATTGAAGGATGGCCTTTGATTAGACACTTTCAACAATATTACTGTAACCTTTGAGATGACAACATGTTCTTGTGGTAGTAGGAAAATGAAACTTAATTGATGTTTGGTTGTTTCATTACATATTTCGATGAGATTCAGAATGATCTTTTGCCATGTAAAGCCACCTTCCAAACTGCTGCGTACTCGGATAAGCGTCAGATAGGGTGTGTGGTGTAGGCCTATTGTGTGTGATGAGAATGGAGAACTCCAGGTTTTTTTAAGAAACCATACTGCCATTCCACATTCAGGCTGTGTATTAGAGATGTGTGTCTAAACAAAATAGCTGTGTGAAGACACTAGTTTGTAGAAATGGGGTGTTCTTTCATAGTGGCACAGAGTTCCAAAGACTTCTCGTTTTGGATGAACTCATGGACATCTGGACTTACAGTAAATACTGTTAGgtgtaaaatgttatttttgtgaTTTAGCTAAGTATTGTTCTCTATGCAAGTGATGTATCAAATACTGTCGTGCAAAAGTAAATCATAATGACAATAAATTAAGTTCAGTTGAAA

Function

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0004332 fructose-bisphosphate aldolase activity molecular_function

KEGG:

id description
K01623 ALDO; fructose-bisphosphate aldolase, class I

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2183822 lncRNA downstream 39645 18326648 ~ 18411029 (-) True G1909483
TU2183824 lncRNA downstream 140188 18309787 ~ 18310486 (-) True G1909484
TU2183840 lncRNA downstream 162130 18286714 ~ 18288544 (-) True G1909496
TU2183837 lncRNA downstream 164499 18283361 ~ 18286175 (-) True G1909495
TU2183797 lncRNA downstream 183026 18267313 ~ 18267648 (-) True G1909470
TU2183936 lncRNA upstream 938 18456536 ~ 18457218 (-) True G1909572
TU2183885 lncRNA upstream 106344 18561942 ~ 18563550 (-) False LOC110503933
TU2183887 lncRNA upstream 109062 18564660 ~ 18565902 (-) True LOC110503933
TU2184256 lncRNA upstream 218481 18674079 ~ 18674568 (-) False G1909868
TU2184257 lncRNA upstream 218481 18674079 ~ 18674678 (-) True G1909868
XM_021582575.2 mRNA downstream 3121 18437538 ~ 18447553 (-) False LOC110503923
XM_021582573.2 mRNA downstream 3121 18437540 ~ 18447553 (-) True LOC110503923
XM_036961188.1 mRNA downstream 15876 18432468 ~ 18434798 (-) False LOC110503924
XM_021582576.2 mRNA downstream 15902 18432468 ~ 18434772 (-) False LOC110503924
XM_021582568.2 mRNA downstream 67484 18363095 ~ 18383190 (-) False LOC110503921
XM_021582581.2 mRNA upstream 9801 18465399 ~ 18494797 (-) False LOC110503927
XM_021582583.2 mRNA upstream 9801 18465399 ~ 18494797 (-) False LOC110503927
XM_021582584.2 mRNA upstream 9801 18465399 ~ 18494797 (-) False LOC110503927
XM_021582585.2 mRNA upstream 9801 18465399 ~ 18494797 (-) False LOC110503927
XM_021582579.2 mRNA upstream 9801 18465399 ~ 18494798 (-) False LOC110503927
TU2183897 other downstream 15882 18432024 ~ 18434792 (-) False LOC110503924
TU2183901 other downstream 15882 18432024 ~ 18434792 (-) True LOC110503924
TU2182802 other downstream 1172264 17277807 ~ 17278410 (-) True LOC118944080
TU2182093 other downstream 2289448 16158846 ~ 16161226 (-) True G1907951
TU2182062 other downstream 2318112 16131990 ~ 16132562 (-) True G1907922
TU2184703 other upstream 512464 18968062 ~ 18973230 (-) False LOC110503944
TU2184704 other upstream 512464 18968062 ~ 18973230 (-) True LOC110503944
TU2184852 other upstream 704851 19160449 ~ 19162158 (-) True G1910398
TU2185002 other upstream 877243 19332841 ~ 19333225 (-) True G1910539
TU2185117 other upstream 1035119 19490717 ~ 19491608 (-) True G1910651

Expression Profile