RNA id: XM_021582580.2


Basic Information

Item Value
RNA id XM_021582580.2
length 9406
RNA type mRNA
GC content 0.51
exon number 40
gene id LOC110503927
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 18465399 ~ 18494798 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATCCAGAATGGGTTCAGTGTGAGGCGTTTCGAACTCCGGGAAACAAATTGGTTGGCCATTTCCATATTGACTTTTTGGTTCTGCTCATCGCTCCTCTGTTTACGGTTGTGGACAACAATCCTAGAATATGATGGTGCTTTGCCACTGAAAATGTAAGGAGGATGAGAACCCTCCAGACGGGATAAGAACATTTGAGACCGTCAGATTTACAAGAGGTTGAAAAGGGGCTTATATTTGTTAGATAGCTACCAAATTTGCCAACATTGGTTTCAATTGACGCTTTTGCTAGCTAGTACGTGGCTATTTAGCTAGCCAACGAACGTCGTAGCTAGCTACCAGCTAGTGACTGACCAGTGATATCTGAGTATAGTTAGCTAGCTCGCTACTCGAATCTGTGAGCCAGTTCCAGCTTTCCATCTAACCCGCTAGCTATATCGGTTCCTTCAAACTTTTTTTTGTGTCAGCCAACGTTCGGTAACGACGTTAGCATATCAGTCTGGCCCTGCGAGCTAACCTAGCTAGTGAAGTGTAGCTATCAGATTTTCCAGACTAGACAAGACAGCGTTAGCTGGCATATGTTATTTAATAGCTATTGAATAGTGCCATGATTGCACTTCTTTAGCAAACAAGACATAACGTGACATTAAGCTCGAGGCACCTGCATGACAGGTATCTCCGGGATCCAAAGAGGAGCTGAACTGTCTTAATTTCCCACCGTGAGGCATTGAAATCAAAATAACCAGCCCCATGACCACACATTGGGTGTGAACGAGGGGTCAACATCAGGACAAATGTCTCTCCTGCTGATCGTCATACTAGCACttctcctgttcctgctcctatCTGTTCTACTCTTCAGATGGTTAATATGCAGCCTGGCGGTACGGTTCTTCCACAACACACTGAATGCTGAGCTGAAGATCAAATCAGTAGGGCTCTTTTCAGTGCATGGAATAAGTATCCAGTTTCAGCCCCAGCACACTCTGGAAATAGACAGGATATGGATTTCAAGCAAACTTTTAAACCAGAACCTGCCgaGGTGCCTGGCTTTGTGTGTGGGCGAGTCCAGAGTGAGAGTGGACTTGCAGCAGCCTCTAAGACCTCGGGCGCCTAAGAGCCGTGATGGAGGAGAGTCAGGGAAGGTTCCCCTTAGCCCTGCAGCCCTGCGGTTCCTCTcccagCTGCTGTCTTTCCATATTGACTCCATCAATGTGATGGTGCTAAACCTAGCCCTGTCAGAGTCTTTATGGTACATGACCACCTCAAGTATCGACTTACTGCTCGACCACCAGGGCAAAAGGTTGGCCTGGGACTTTTCTGTTGGACAGCTAAGCAGTAAAGTGCTTAAAAGCAGTCGATTGGATACATGTCTGGCAGAGGTGTCCCTGAGCCTGGTGCTGTCTGGGGATGTCAGCCTGCCAGAGCTGCGTCCAGGCCGACTGGCCCTGTGTGTGAGAACACTGCTTGCTGAGCTGCACGAGGGCCTGTTCCTCAGCCAGCTGCtgcttccacctcctcctctggaGAGCACTCTCTCTGCAGACGAATGTGAAAAGGACGAGTATATCCAGACTGAAGCAGTGGAGCAGTTTCATCAGCTGGTGCCCCAGAAGGTCAACATGGAGTTTGAGAATACTAGTATAACCCTGTCCATGCACAGCCAGAAAAGACACTTGAACTGGACCCTAAAGTCTCTGAAGGTGGGATACGGACGTGAGGACGAGCAGCTGCCCCTCAGGAGCTTCACCCCTGAGATGAGCTTCCCTCAGAGCAGCCTGGAGCTACTTCTGGAGGATGGGCTTCTCCTCTCCCAGAGCAGACAGAGAATCCTTTGCCTTAACACCCTCAGGACTGTCCTGCAGGTGACATCAGTGGACATttcagggtcagtcacagtcAACACCTGCATCATCCACTACCGTCACCAGGAGTTCTCCCATTGGCTAGACCTGTTTCCATGGAAACAGCTTATTCATAGGAAAGAAGCTCATAGAAAGAGtcCAGTGGAGTATTTGCATACCCTCCCGTCCTACAGGAACTTCCCCCATCTGGACGCCCCAGTGATGATCAGCTCCTCTGTGTCCAATGTCAACGTTTCTGTCCAGCTGGGAGACACTCCTCCCTTTGCCCTGGGCTTCATCTCAGTCAGCTCAGAGATGCAGCACCTCCTGGACATCAGCACAAACGCAGAGAGCCTCAAGTTCCAGAATGTTCACCGCCGCCTCGCTCTGTCCCTGGACCACTTCTGGTGGAGGGTAGGCCAGGGGTCCCACATCCAGCAGGCCCCCCACCCCCCTGGCAAACATGTGTGGGGGGAAGCCCTCATCCTGGACTCCCTTACACTGCAGGTAACGCAGGCATACAACAAGGGGAGCTTCAACAAGCCCCAGAGTGAGTCCAGTAGTCATTCTGAGAGTGTGAGTGTGGAGTCCAATCTGAAGGGCCTACAGCTGGAGGTGTCCGAGACCTGTGCCTTGTGCCTGTCCCGCCTATTGGCCCTCTGTAACCTTGCCAATGGCAGGAAGCTGGAGGCCTCAGAGCAGCCAGATGTGGTGCCTGTTCCTGCCCTTGTTGATGGGACAACCTCCCCCAGTCAGGGCGCCTTTTATTTTAAGATTGAGTGTAACCTGGAGGATGTCAATGTGTTCACACTCTCTAATGTAGCAGGAGCTGTGTCTTTGCGGGTGGACAAAGTGAAGGCCCAAGGCTCGGCGGAAAGCTCCACATTGTCTGTCCAGGGTGTACGTCTATGTGTAGTGAAGGCTCTCACAGAGACCATGGAGCCCTGCTGTCCCTCAGCCCAAACCCCCAACCCTGTCCTCAGCCTCTCCACCCTGGCCATCTGCTACCACGTCGCCACCGGGAACGTGGAGGTCCAGTGTGAAGAGGAGCTGGCAGTGCAGTGGACGCCATCAGACCACATGTTTTTATATCACCACGTGACAGAGAGCCAGGGTTGCTGGGATACTCTGTGTGATTCTCTAGGCCTGACAGAGAGAAGAAATGACGAGAGTTTAGCAGATCCTCCAGAGAGTGGATCTACTAAGACTTCTCCAGCCCACAGTACGGTCAAGGACCTGTCTGTGCGTGTAGAACTGGGCAGAACCCGCTTCACAGCCCAGGTGACAGAGCACAACTACCTCCTGCTGCACACAGACGCCCTGTCCCTCTCCACTCACTCCGGCTCCATGAACGTCCGCTCTCCACACATGTTTCTCAACTTCGACGGCAACGACATATTCTCCTTCAAGGGCCTGGAGGTCCAGACGCACCCTGATCAGGCCCTGGACCAACGccacctctttcccttcctctccaccCGACACAACCGTGCCTGGGTGGTCACCTGCCCCTGCCTGGCTGTGGAGTTCCCCTACCAGTACAACTTCTCCAACACCTTTGACAAGTTCATCAGCGTTCAGAAGTGGCTCAAGTCCTTGCACAGCAGCCCTGGTCAGACCCCAGGCCCCCAGCGCCTGCCCCCAGACCTGGTCTTCAAGATCAGCCAGTTCTCTTTCGTCTTCCTGGATGACGTTTTTGAGATCAAGCTGAGGGACAACTACGAGCTGATGAAGGATGAGAGCAAGGAGAGCTCCAAGAGGCTCCAGCTGCTGGACAAGAAGGTGGCTGACCTACGGAAGCAGCACGGAGAACTGCTGCCTGCCAGGAAGATAGAAGAGCTGTATACGTCGCTAGAGCGCAAACACATAGAGATCTACATCCAGCGCTCCCGTCGCCTCTACTCCAACACGCCCATGAGGAAGTCTCTGCTGACCTGGACGGTGTCCGACTTGGAGCTGGTGTCCCTGGCCGACCAGTCCTTCCATGGGCCGGAGCGCGTCCGCGAGCATCTGAGGGACATCGACGGAGTCAGCCCCTTCCCCAGAGACGGGCTCCCCCTAGTGGTCCAGTGGTGCCGGGCAGTCACGTTCAACCTCACTGCCTTCCTAGTGAGAATCCGGGACTATCCTCGTTACTTGTTTGAGATCCGGGACTGGGAGCTGTCAGGCCGCTTGATCGGGACAGAGCAGGACGGGCAGGGCCGGGCTCGCCGAAGGCAGACTGTGCCACTTGGCCAGCCATGGGGCGACATAACCGTCCACAGGAACATGCCACCACTCAAGTTCTACTGCGATTTTAAATCCAATATATCCTTGTACACTATAGTGTGGGGGCCTTGCTGGGACCCAGCTTGGACCCTGATTGGCCAGGTGGTTGATCTGCTGACCAAACCCACGGttgacccctcccctcctctggcCTGGTGGGACAAGAGTCGTCTGCTGGTACATGGACGCTGGATCATGGACATAGAACAGGCCAACCTCCATCAGCTGGCCACGGAGGACCCCTATAACACTACAGAGAACATGCACTGGGAATGGAACAAAGTCAACTACGAGTGGACTCCTGGGCAGTTTGTCTTCAAAGGTGACATGGATGTCAACGTCAGGACAGCCTCCAAGTATGATGACATCTGTTTCCTGCACCTGCCAAATCTGTGCATGACCCTTGACCTCCAGTGGCTTTGTCATGGCAACCCCCATGACCATCACGCTGTAATGCTCTGCTGTGCAGAGAATGTAGCTGATGTGACATCAGGACAACCTCACGACTCCTTCAGAGCCTTCCGCTCAGAGAACCTCAACCTCTCCATCACCATGGACCTCAACCAACACTGTGGCACCGagccgTGCCAGCCCAGAATCCTCCTGTACAGCAGTACCCTGCGCTGGATGCAGAACTTCTGGGCCACCTGGACCAGCGTTTCCAGACCCATCTGCAGAGGCAAGATCTTCCACAGCCTCAGACCCATCCGAAAGAAGCTGGGCCAGCACTACAAACAGATGTCCTATACAGCAGCCTTTCCTCAACTACAAGTGCATTACTGGGCCTCCTTTGCTCAGCAGAGGGGCATCCAGGTGGAATGCAGCAAAGGCCACGTCTTCACCAGAGGGGCTCAGAGACTCATCCCACAGGcGGGCACGGTGATGAGGAGGCTGATCTCTGAGTGGAACGTGACCCAGATGGTGTCAGAGCTGTCCCTGATGACGGTGCACCTCATGGCCTCCACCTGGGACGAGACGGCTGACCACCAGATCAACGCCCAGGTGAAGAAGACCCACCTGCTCGGCCTGTCCTCCCTCAGTTACCAGCGCCAGAGCAACCGTATGGAGGAGGAGGGGAACCCAAAAGATGAGGCGAATGCCCCCTACACCCACAAGCTGTGCCTGGTTGACCTGCGAGCCTCCTGGACCACCACTAACAGGAACATAGCGTTCGGTCTGTACGACGGCTACAAGAAGGCAGCCGTTCTCAAGAGGAACCTCTCCACAGAGGCTCTGAAGGGCCTGAGGATAGACACTACACTGCAAGCTGCCAAGAAGCTCAAGCGCTCTTTGTCCAACTACTCCGGCGGCCCCAGCACGGCCCCCTCCACCCCAACCATGCCCAGCACCAGCCGCCCTGAGAAGAGCCAGCACGAAGGGACGTCCATGCTGCAGAAGCTGATTGAGGAGACTGATAAGTTTGTGGTGTTCTCAGAGGAGGACTCTGGTGTCAGTGATCAACTGTGTGGTATCGCTGCCTGCCAGACAGACGACGTCTACAATCGCAACTGGTTCATCGAGCTGGTCAACTGTCAGatGATGCTGCGTGGCACAGAGACAGCTGGCTGCGTGCTGGTGTCTGCTGCCAAGGCTCAGCTGCTGCAGTGTGAGCACCACCCGGCCTGGTACAGCGACACCCTCAAGCAGAAGACCACCTGGACCTGTCTGCTTGACGGCATGcagtactttgccaccatggagCCCAACCCCTCAGAGCAGGAGGACTGGCAGTTGTGGCTTGAGGTGAAAAACATTGAGGAGCACAGGCAGCGTCACCTGGACTCAGTGCTGGAGCTGATGGAGAGTGGCCAGGCTGTTGGAGGCATGGTCAGCACCACAACAGACTGGAACCAGCCGGCCCAGGTGAATGACACTCAGCAGGTCCAGCGTATCATCTCTCGTTGCAGCTGTCGCATGTATTACATCGGCTACAGCCACGACATCGACCCTGAGCTGGCCACGCAGATCAAACCTCCAGAGATACGGCGCAACGAGAAGGAAGACCTGCTGAAAAAACAAGCTGGGGCTGTGGACACCTTCACCCTCATTCACCATGACCTGGAGATCTCCACCAACCCTGTGCAGTATGCTATGATCCTGGACATCGTCAACAACCTACTGCTGCACGTTGAGCCCAAACGCAAGGAGCACAGTGAGAAGAAGCAGCGCGTGCGTTTCCAGCTGGAGATCTCTAGTAACCCAGAGGAGCAGCGCAGCAGCATTCTACACCTGCAGGAGGCCGTAAGGCAGCACGTGGCCCAGATCAGACGCCTGGAGAAACAGATCTACTCCAATATCAGGGCCCAGCCTGAGGATCTGAGAGGAGATGAGCTGTCAGAGATCAACGTGAGGCTTCAGAACCAGCTCAATCAGGAGAAGACTGACATGCAGATGAAGAGTGAGGAGCTCAACATCCTCATCAGATGTTTTAAAGACTTCCAGCTGCAGAGGACCAATAAGCTGGAGCTGCGTAAGCCGCCGGAGGACGTGAGTGTGGTTCGCAGGACAGAGATCTGCTTTGCCCAGGCCCGCTGGTGtctcactgaggaggatggacaGCTGGGCATCGCTGAGCTGGAGCTGCAGAGGTTCATGTACAGCAAGCTGAACAAGTCAGATGACACAGCAGAGCATCTCCTGGAACTGGGCTGGTTCACCATGAACAACCTGCTCCCCAACGCTGCATACAAGCATGTGAGGGTGGTGTTGCGTCCTCAGAGCCCGTGTCAGTCTGGCCGTCAGTTTGCCCTGCGCATCTTCAGTAAGGTCCGCCCCCCAGTGGGAGGCATCTCAGTCAAGGAGCACTTTGAGGTGAACGTGGTTCCTCTCACCATCCAGCTCATGTACCAGTTCTTCAAAAGGATGATGGGATTCTTCTTCCCAGGAaggaatgtggaggaggaggaagttgcTGATGAGGAGGACAAGTCCCGAATGGTCACTACTGGCATGCCTGTCATCAAGCCTCGGCAGCTCTCGGAAGACACCATGGGGGTCATGGGCCCCAGCAAAGGGGTCACCCAGGGCTTGAACCGTACCTCTGGGGTCAGGAGGTCCTTCCGAAAAGCTGTTGAGCATCCTGTAGATGACATCGACAAGATGAAGGAGAGAGCAGCCATGAATAACTCCTTCATCTACATCAAGATCCCCCAGGTTCCCCTGTGTGTCAGCTATAAGGGAGAGAAAAGCAGTGTTGACTGGAAGGATCTGAACCTGGTTCTACCTTGTCTGGAGTACCACAACAACACGTGGACCTGGCTGGACTTTGCCATGGCTGTTAAGAGGGACAGCAGGAAAGCACTGGTAGCACAGATGATAAAGGAGAAGCTGCGTCTGAAGCCGGCGTCGGGCTCTGACTCTCGGAGCAAGGCGTTTGAGGGGAAGTCAGACAGTAGcatgcagcagcagcaggaggaggatgagaaggcCCGACTCCTCATCGGTCTCAGCAGCTCAGACAAGAGTTCCAGCAAGAAGAGCATCTTCAGCCGACGCAAGTGACCCATAGGCCCACATACACTCCCACTGAACCAGTACTGTACTGGACCACTGCGCTCTAGTCTATggaagtgtcccaaatggcaccctataccccaCATAGTGAACTACATTCAAACAGGGCCCTATGgttcctggtcagaagtagtgtagtgtactgtatagagaatagggtgccatttgggatgcagtctatGGTAGCTACAGTAGCACACGCCCAGGGAATCATGGAGAGGTCAATGTCTTTACTAGCGTATTATCTGATGACACTTGACCTGGTTGAATACTGTATGCTCTGGTGTGAAGATAGAGGTAGCAGGTCATTATGGGGAACAGAGACTGATAATATAACACACCCTGTTCTTTCTTACCTGGAGGGGGACAAACTACGGCCTGCGAGCCAAGTCCGGCACGCCAGCCAATTAAATATGGCCCACGATGGCTGAAATTATTATTTTAGGATAAACTACTCCAGTCCATATTTGAACATACAAAACTATATAGAAAGTATGTAATAATTATCTCTCAACTGCTGTCCAATGAAGCATGCATTTTCAtgtatgaccagggcccatattcaaTGTGTCTGAGTaggggtgctgatctaggatcaaatCCCCTCCTGTCCATATAATTGTATTTGTTATGATCTAAAAGTaacaactgatcctagatcagcactcttttTCTAAGAGGTGTTATGGATACATACGGGGCCCACTTCTCTGCTAAAAACATGCCAGGGTCTTATTGACCAAATGTATCTtttgttttcttgtttttgttttttgtgcCATACATTAAACATTTAATTTTCATTCAATGCATCACACATGGTCCTGAACTTTCAGAATCAGCAGCCTATACTTGTTGCATTAATAGCATGACTGGGTGATGGGTATTTTATTTTAGTTTCACTGTCTGCTCATTTCCCCTGTAAATCAATTAGAACATTTCATAGTTTATATGTGACTGTCTCAAAttgcaccctcttccctatatagttcactactttagagGATAGGATGctgaagtagtgcactttatattGGATAGGATGCCATTTAAGATGCAGCTAATGTGATTTGTTGAGAGCATTGTTACCTGCTGGTTCAGGAATACTGTATCCTCAAGCAAATGTAAATCAGGTAGATTGTAAAACATTTTAATCTCAAATGAAAGCACCTTGACAACCATAGAAATGCTGTCTGTTGCAACAGTTAGAAATGCCTGATTCACTAGTACAGGGGGAGATATATTCTAGCCTTGTACTTTTATTATATTGTTGGAATTTTACTCAAGTCTGTATCATACTGTCACACTGACTGGGAAGTGCTTCCCTGTAAAAGATCACAAATATATAATTTGGTACCCTGCATGAGACTTCTCCAACAACATATATGCCACAGCAGACGTACGTTTTATACCGCAGTTCCTAAACATATCTGTGCGGAAATATGTTCTTGTTTTCTATTTTATGGCAGTTGTTCTGTCAGCTTTGATAGTCTCTGCAAAAATAATTTTGTTGCAGCTTGTCTTGATAATGTTTTGAAATTTTAACACTACAGCACTTTTTAAGCAAAGTATTTTCAGATATTTTTGTAACCATGGTTATTTCTTTTCAATCACAACTGTACCTACACCTACTGAGTTTGTTATTCAGTTACAGCTTCCTTAAAGTGCAAGATGTCAAATATTTCTGTCAAAATATTTCAAGAAAAATGGATTATACCTCAATGTAATGAGCACCATATATGTAACTATAAATGTTTGTCAATAAAATAGTTGTTCTAATGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2183936 lncRNA downstream 8181 18456536 ~ 18457218 (-) True G1909572
TU2183822 lncRNA downstream 54370 18326648 ~ 18411029 (-) True G1909483
TU2183824 lncRNA downstream 154913 18309787 ~ 18310486 (-) True G1909484
TU2183840 lncRNA downstream 176855 18286714 ~ 18288544 (-) True G1909496
TU2183837 lncRNA downstream 179224 18283361 ~ 18286175 (-) True G1909495
TU2183885 lncRNA upstream 67144 18561942 ~ 18563550 (-) False LOC110503933
TU2183887 lncRNA upstream 69862 18564660 ~ 18565902 (-) True LOC110503933
TU2184256 lncRNA upstream 179281 18674079 ~ 18674568 (-) False G1909868
TU2184257 lncRNA upstream 179281 18674079 ~ 18674678 (-) True G1909868
TU2184258 lncRNA upstream 180879 18675677 ~ 18677393 (-) True G1909869
XM_021582578.2 mRNA downstream 157 18453991 ~ 18465242 (-) True LOC110503926
XM_021582577.2 mRNA downstream 9801 18450674 ~ 18455598 (-) True LOC110503925
XM_021582575.2 mRNA downstream 17846 18437538 ~ 18447553 (-) False LOC110503923
XM_021582573.2 mRNA downstream 17846 18437540 ~ 18447553 (-) True LOC110503923
XM_036961188.1 mRNA downstream 30601 18432468 ~ 18434798 (-) False LOC110503924
XM_021582590.2 mRNA upstream 470 18495268 ~ 18501113 (-) False LOC110503930
XM_021582591.2 mRNA upstream 470 18495268 ~ 18501115 (-) True LOC110503930
XM_021582588.2 mRNA upstream 9278 18504076 ~ 18533662 (-) False LOC110503929
XM_021582589.2 mRNA upstream 9278 18504076 ~ 18552009 (-) False LOC110503929
XM_021582587.2 mRNA upstream 9278 18504076 ~ 18561364 (-) False LOC110503929
TU2183897 other downstream 30607 18432024 ~ 18434792 (-) False LOC110503924
TU2183901 other downstream 30607 18432024 ~ 18434792 (-) True LOC110503924
TU2182802 other downstream 1186989 17277807 ~ 17278410 (-) True LOC118944080
TU2182093 other downstream 2304173 16158846 ~ 16161226 (-) True G1907951
TU2182062 other downstream 2332837 16131990 ~ 16132562 (-) True G1907922
TU2184703 other upstream 473264 18968062 ~ 18973230 (-) False LOC110503944
TU2184704 other upstream 473264 18968062 ~ 18973230 (-) True LOC110503944
TU2184852 other upstream 665651 19160449 ~ 19162158 (-) True G1910398
TU2185002 other upstream 838043 19332841 ~ 19333225 (-) True G1910539
TU2185117 other upstream 995919 19490717 ~ 19491608 (-) True G1910651

Expression Profile