Item | Value |
---|---|
RNA id | TCONS_00006027 |
length | 600 |
lncRNA type | sense_over |
GC content | 0.49 |
exon number | 3 |
gene id | XLOC_002691 |
representative | True |
Item | Value |
---|---|
chromosome id | NC_007121.7 |
NCBI id | CM002894.2 |
chromosome length | 45420867 |
location | 17552733 ~ 17587901 (-) |
genome version | GRCz11_2017_zebrafish_Genome |
species | zebrafish (Danio rerio) |
id | name | namespace |
---|---|---|
GO:0006325 | chromatin organization | biological_process |
GO:0043044 | ATP-dependent chromatin remodeling | biological_process |
GO:0006974 | cellular response to DNA damage stimulus | biological_process |
GO:0000729 | DNA double-strand break processing | biological_process |
GO:0006281 | DNA repair | biological_process |
GO:0035861 | site of double-strand break | cellular_component |
GO:0005634 | nucleus | cellular_component |
GO:0005694 | chromosome | cellular_component |
GO:0005524 | ATP binding | molecular_function |
GO:0016787 | hydrolase activity | molecular_function |
GO:0003677 | DNA binding | molecular_function |
GO:0003678 | DNA helicase activity | molecular_function |
GO:0003682 | chromatin binding | molecular_function |
GO:0000166 | nucleotide binding | molecular_function |
GO:0004386 | helicase activity | molecular_function |
GO:0008094 | DNA-dependent ATPase activity | molecular_function |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TCONS_00006026 | lncRNA | downstream | 70893 | 17509980 ~ 17511199 (-) | False | XLOC_002688 |
TCONS_00004994 | lncRNA | downstream | 118675 | 17460789 ~ 17463417 (-) | False | XLOC_002686 |
TCONS_00006025 | lncRNA | downstream | 139671 | 17437490 ~ 17442421 (-) | False | XLOC_002685 |
TCONS_00006024 | lncRNA | downstream | 139671 | 17437490 ~ 17442421 (-) | True | XLOC_002685 |
TCONS_00006023 | lncRNA | downstream | 140110 | 17437490 ~ 17441982 (-) | False | XLOC_002685 |
TCONS_00005011 | lncRNA | upstream | 143392 | 17731293 ~ 17745344 (-) | False | XLOC_002694 |
TCONS_00005008 | lncRNA | upstream | 143392 | 17731293 ~ 17745345 (-) | False | XLOC_002694 |
TCONS_00005006 | lncRNA | upstream | 143392 | 17731293 ~ 17745345 (-) | False | XLOC_002694 |
TCONS_00005007 | lncRNA | upstream | 143530 | 17731431 ~ 17745344 (-) | False | XLOC_002694 |
TCONS_00005010 | lncRNA | upstream | 143546 | 17731447 ~ 17745342 (-) | True | XLOC_002694 |
TCONS_00005001 | mRNA | downstream | 31161 | 17543680 ~ 17550931 (-) | True | XLOC_002690 |
TCONS_00005000 | mRNA | downstream | 31853 | 17543276 ~ 17550239 (-) | False | XLOC_002690 |
TCONS_00004996 | mRNA | downstream | 80564 | 17485945 ~ 17501528 (-) | False | XLOC_002687 |
TCONS_00004993 | mRNA | downstream | 97328 | 17460361 ~ 17484764 (-) | False | XLOC_002686 |
TCONS_00004992 | mRNA | downstream | 97330 | 17460358 ~ 17484762 (-) | False | XLOC_002686 |
TCONS_00005005 | mRNA | upstream | 112115 | 17700016 ~ 17710637 (-) | True | XLOC_002693 |
TCONS_00005009 | mRNA | upstream | 143531 | 17731432 ~ 17745374 (-) | False | XLOC_002694 |
TCONS_00005012 | mRNA | upstream | 399387 | 17987288 ~ 17988779 (-) | False | XLOC_002696 |
TCONS_00005013 | mRNA | upstream | 399534 | 17987435 ~ 17988779 (-) | False | XLOC_002696 |
TCONS_00005015 | mRNA | upstream | 704070 | 18291971 ~ 18468385 (-) | False | XLOC_002699 |
TCONS_00005003 | other | downstream | 11940 | 17562975 ~ 17570152 (-) | False | XLOC_002691 |
TCONS_00004999 | other | downstream | 39070 | 17533610 ~ 17543022 (-) | True | XLOC_002689 |
TCONS_00004998 | other | downstream | 63058 | 17509980 ~ 17519034 (-) | True | XLOC_002688 |
TCONS_00004997 | other | downstream | 80688 | 17493481 ~ 17501404 (-) | True | XLOC_002687 |
TCONS_00004991 | other | downstream | 239611 | 17342365 ~ 17342481 (-) | True | XLOC_002684 |
TCONS_00005004 | other | upstream | 39227 | 17627128 ~ 17627253 (-) | True | XLOC_002692 |
TCONS_00005042 | other | upstream | 2895913 | 20483814 ~ 20483930 (-) | True | XLOC_002716 |
TCONS_00005057 | other | upstream | 3072516 | 20660417 ~ 20696513 (-) | False | XLOC_002723 |
TCONS_00005060 | other | upstream | 3320541 | 20908442 ~ 20908556 (-) | True | XLOC_002725 |
TCONS_00005063 | other | upstream | 3452756 | 21040657 ~ 21043408 (-) | True | XLOC_002726 |