RNA id: TCONS_00006027



Basic Information


Item Value
RNA id TCONS_00006027
length 600
lncRNA type sense_over
GC content 0.49
exon number 3
gene id XLOC_002691
representative True

Chromosome Information


Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 17552733 ~ 17587901 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CGGCCACCGTAGTTACAGATGTTACAACCGGTTAGCGTTTGATCAGAACTGTCTTCATTCATTAAATACCGTACAAACAACAAAAGCGGTGAAATATCTCAGACACACGTCACGCAGACTAATGGCCGGAGTTAACCAGGTTTATCTGTTCATTAGCGGCGGCCGAAACCGACTAGAGGCTGATTATTGACAAAGCGATCATTTATTAGCTCGCCGGTGAACTCTTTGTTATAGTCAGCTGCTTTTATGGTCCCCAAATCAGCTGAAAGCGGGTTGTAGATGGTGGATTCGGGCAGCGACGCGTCAGATGTGGCTCAGTGTATCGATTGAGATGCGTGACATTATGCGCGAAAGTGGATTGAGCTGTTTTTCTAACGCGTCGAGTGAACAATGAGGAGAAAGAAAGGACCAGCATCATCCTCAGATCATGAGGAGCCCCCGGAGTCAGACAGTGTCATTCCAGAGACGCCGGAAACCAAACGTCCATCGGGATCATCTCTGTCCACCGCCATTTCTGACTCGGACTCGGACTCTGATAGTGAGATTTCAGGCAGCTCCATGATGCCTGTCAGGAGCATTTCATCCATGCtcccatgacaa

Function


GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0043044 ATP-dependent chromatin remodeling biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0000729 DNA double-strand break processing biological_process
GO:0006281 DNA repair biological_process
GO:0035861 site of double-strand break cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function
GO:0003682 chromatin binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004386 helicase activity molecular_function
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00006026 lncRNA downstream 70893 17509980 ~ 17511199 (-) False XLOC_002688
TCONS_00004994 lncRNA downstream 118675 17460789 ~ 17463417 (-) False XLOC_002686
TCONS_00006025 lncRNA downstream 139671 17437490 ~ 17442421 (-) False XLOC_002685
TCONS_00006024 lncRNA downstream 139671 17437490 ~ 17442421 (-) True XLOC_002685
TCONS_00006023 lncRNA downstream 140110 17437490 ~ 17441982 (-) False XLOC_002685
TCONS_00005011 lncRNA upstream 143392 17731293 ~ 17745344 (-) False XLOC_002694
TCONS_00005008 lncRNA upstream 143392 17731293 ~ 17745345 (-) False XLOC_002694
TCONS_00005006 lncRNA upstream 143392 17731293 ~ 17745345 (-) False XLOC_002694
TCONS_00005007 lncRNA upstream 143530 17731431 ~ 17745344 (-) False XLOC_002694
TCONS_00005010 lncRNA upstream 143546 17731447 ~ 17745342 (-) True XLOC_002694
TCONS_00005001 mRNA downstream 31161 17543680 ~ 17550931 (-) True XLOC_002690
TCONS_00005000 mRNA downstream 31853 17543276 ~ 17550239 (-) False XLOC_002690
TCONS_00004996 mRNA downstream 80564 17485945 ~ 17501528 (-) False XLOC_002687
TCONS_00004993 mRNA downstream 97328 17460361 ~ 17484764 (-) False XLOC_002686
TCONS_00004992 mRNA downstream 97330 17460358 ~ 17484762 (-) False XLOC_002686
TCONS_00005005 mRNA upstream 112115 17700016 ~ 17710637 (-) True XLOC_002693
TCONS_00005009 mRNA upstream 143531 17731432 ~ 17745374 (-) False XLOC_002694
TCONS_00005012 mRNA upstream 399387 17987288 ~ 17988779 (-) False XLOC_002696
TCONS_00005013 mRNA upstream 399534 17987435 ~ 17988779 (-) False XLOC_002696
TCONS_00005015 mRNA upstream 704070 18291971 ~ 18468385 (-) False XLOC_002699
TCONS_00005003 other downstream 11940 17562975 ~ 17570152 (-) False XLOC_002691
TCONS_00004999 other downstream 39070 17533610 ~ 17543022 (-) True XLOC_002689
TCONS_00004998 other downstream 63058 17509980 ~ 17519034 (-) True XLOC_002688
TCONS_00004997 other downstream 80688 17493481 ~ 17501404 (-) True XLOC_002687
TCONS_00004991 other downstream 239611 17342365 ~ 17342481 (-) True XLOC_002684
TCONS_00005004 other upstream 39227 17627128 ~ 17627253 (-) True XLOC_002692
TCONS_00005042 other upstream 2895913 20483814 ~ 20483930 (-) True XLOC_002716
TCONS_00005057 other upstream 3072516 20660417 ~ 20696513 (-) False XLOC_002723
TCONS_00005060 other upstream 3320541 20908442 ~ 20908556 (-) True XLOC_002725
TCONS_00005063 other upstream 3452756 21040657 ~ 21043408 (-) True XLOC_002726

Expression Profile


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