RNA id: XM_021582587.2


Basic Information

Item Value
RNA id XM_021582587.2
length 2424
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC110503929
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 18504076 ~ 18561364 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACACCACACATTGGAGCCGCTGAGCTGAGAAGCGGAAAAGGGTATCTGTCGTCGTGCACACATTTGAGCATAGGCTATACCACGAATTGGGGCTCTCCAAGGAAGCTAAATTGGAGGACGAGGGCGTGTTTGTTTTTACTGAGCCTTTCGGTTTTCATTTTCTGCAGTCTTGGTAAGAGAACGGAATATATTAGGGTCTGTTTCAAGGACTAGAGCAGAGATGTCAGAGTTTCTGGTGAATCTACTCGGGGAGCGGCTCGTCAACAGCGAGACAGCCGAGGTGGATGTACAGGCGCTGGGCAGCAAGCTGTCCCTGGTCGGGCTCTACTTCGGCTGCAGTTTAAACGGCCCCTGTAAGCAGTTCAACGCCAGTCTGTGTGAGTTTTATAGCAAGTTCAAAAAATCATCTGAACATAAAGACACATTGGAAATCGTCTTCGTCTCATCTGATCAGGACCAGAAACATTGGCAAGACTTTTTACAGGAGATGCAATGGCCGGCATTGCCTTTCAAAGATAGACACAAAAAGATGAAGCTGTGGAACAAGTACAAGGTGACCAGTATTCCCTCGCTGGTGTTTGTGGACGCAGCCACAGGGAAGGTGGTGTGTCGGAATGGACTGCTGGTGGTGAGAGATGACCCCAAAGgCTTGGAGTTCCCCTGGGGGCCCAAGCCCTTTGCGGAGGTGGTGGCCGGCCCTCTGCTCAGGAACAACAGGCAGACGACAGACATCAGCTCCCTGGAGGGCCACTATGTGGGAGTGTACTTCTCAGCACACTGGTGCCCTCCATGCCGCAGTCTGACCCGTGTGCTCTTGGAATCATATCGCACTGTGAAGGAATCGGGTCAACATTTTGAGATGGTGTTTGTCAGCGCTGACCGGTCGGAGGAGTCCTTTCAGCAGTACTTCAGTGAGATGCCTTGGTTGGCAGTCCCATACTCAGACGAGGCCCGACGATCACGACTCAACAGACTCTTTGGAATACAAGgTATTCCCACCCTTATTCTGCTGGACGCGGAGGGTCACATGATCACGCGACAGGGCCGTGTGGAGGTGCTGAATGACCCAGAGTGTCGGCTCTTCCCCTGGCACCCCCGGCCTGTACTGGAGCTCAGCGAGTCTAACGCTGTGCAGCTCCACGAGGGGCCCTGCCTCGTGCTCTTTGTGGatacgGAGGAGGAGGGTGAGCTGGAGCCGGCGAAGGAGCTGATCCAGCCAATCGCAGAGAAGATCATGGCTAAGTACAAAGCCAAGGAGGAGGAGACACCACTGCTCTTCTTCGTGGCTGGAGAGGATGACATGAGTGACTCCCTGCGTGACTACACCAACCTCCCAGAGGCAGCACCCCTGCTCACCATCCTGGACATGTCTGCCCGGGCCAAGTACGTTAAGGACGTGGAGGAGATCACACCGGCCGTGGTGGAGACCTTTGTCCAAGACTTTCTGGCTGAAAAGCTCAAACCAGAGCCCATCTAGAGAGCACGGCTAGActgtcccaaatgacactatTACCtgcatagtgcactgcttttgaccaaggtttagtcctggtctaaagtagtgcactatatagggaatagggtgccatttggggaacACACCTAAACTTATGGGACTGAACCCACACCTCCATCAAACCCTGAACTCCCGGCTACCACCAGCCAGCCTCCTCTCCAGTCTCCCCCTTTTAGTCAAAGGTCTCACTTTTGACTGACATCAACTTTTTTCAGACAGGTCTTTCTCTCATGGAGTCTTCTCCTGTGGTGCCTTGCATTGACTAAAGCCCCTACAGTAATATATGAACATTCTGTTGCTTTTTGGCTCCAATAGCTTATTTGATCAGTTTCATTATTGGCATTTCTTGATACTAGAAGAAACCACACAATGTCGACCCAATGGACTTGAATTTTCACAATGTCTCTTTCTTTTGCCGAACCCTCATTGCTGGGAAAGAATAAAATGATTGCAACAAACGTTCTATAGTTGTAATTTACAAGTATGCAGTGCAGAAAATGTTCTGATCTTCCGTCTGGTGTTATTGTTCTTCTGTTTAAAAGGTGCTGCAGAGTAGTATGGCCGCTGTGCATACAGTAGACTTAACAATGTCTGATTTCCCTGTTTTAAAAGGTCATTTTGTCTGTATTTGCTTGTTTTGTATTGTGAATGGTATTTCAAATACCATGTCATGTTCTCCATGATACGAGAGAGTAGTCTTATCATAATTATGTTTCCATTTCAACCACCATGACATAAGATGATTTTCTGTGAAGATCCTCTCTATTGAAAAGGCCAGATATTTTTGAAGGCACAAAAATGGCATTTTAAAATCCATCTTAGCAACTAAGTGTATTAATTCACATTTGTCACTCCCTGGTTGTCTCTAGTCATGACTTCACAGCCATTAAAATTCACTGTTAAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2183936 lncRNA downstream 46858 18456536 ~ 18457218 (-) True G1909572
TU2183822 lncRNA downstream 93047 18326648 ~ 18411029 (-) True G1909483
TU2183824 lncRNA downstream 193590 18309787 ~ 18310486 (-) True G1909484
TU2183840 lncRNA downstream 215532 18286714 ~ 18288544 (-) True G1909496
TU2183837 lncRNA downstream 217901 18283361 ~ 18286175 (-) True G1909495
TU2183885 lncRNA upstream 578 18561942 ~ 18563550 (-) False LOC110503933
TU2183887 lncRNA upstream 3296 18564660 ~ 18565902 (-) True LOC110503933
TU2184256 lncRNA upstream 112715 18674079 ~ 18674568 (-) False G1909868
TU2184257 lncRNA upstream 112715 18674079 ~ 18674678 (-) True G1909868
TU2184258 lncRNA upstream 114313 18675677 ~ 18677393 (-) True G1909869
XM_021582591.2 mRNA downstream 2961 18495268 ~ 18501115 (-) True LOC110503930
XM_021582590.2 mRNA downstream 2963 18495268 ~ 18501113 (-) False LOC110503930
XM_021582579.2 mRNA downstream 9278 18465399 ~ 18494798 (-) False LOC110503927
XR_005039333.1 mRNA upstream 566 18561930 ~ 18564460 (-) False LOC110503933
XM_021582593.2 mRNA upstream 566 18561930 ~ 18566131 (-) False LOC110503933
XM_036961084.1 mRNA upstream 195982 18757346 ~ 18764696 (-) True slc47a3
XM_021582599.2 mRNA upstream 213892 18775256 ~ 18787910 (-) False slc13a5b
XM_036962081.1 mRNA upstream 214551 18775915 ~ 18787927 (-) True slc13a5b
TU2183897 other downstream 69284 18432024 ~ 18434792 (-) False LOC110503924
TU2183901 other downstream 69284 18432024 ~ 18434792 (-) True LOC110503924
TU2182802 other downstream 1225666 17277807 ~ 17278410 (-) True LOC118944080
TU2182093 other downstream 2342850 16158846 ~ 16161226 (-) True G1907951
TU2182062 other downstream 2371514 16131990 ~ 16132562 (-) True G1907922
TU2184703 other upstream 406698 18968062 ~ 18973230 (-) False LOC110503944
TU2184704 other upstream 406698 18968062 ~ 18973230 (-) True LOC110503944
TU2184852 other upstream 599085 19160449 ~ 19162158 (-) True G1910398
TU2185002 other upstream 771477 19332841 ~ 19333225 (-) True G1910539
TU2185117 other upstream 929353 19490717 ~ 19491608 (-) True G1910651

Expression Profile