RNA id: TCONS_00053327


Basic Information

Item Value
RNA id TCONS_00053327
length 8143
RNA type mRNA
GC content 0.44
exon number 20
gene id XLOC_027049
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5341592 ~ 5368158 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTGTGTCGCTCAGTCCTGTGTTTTGAAACCAGCGAAAAGGACAGGTGGACACGCGTCGAAATGAAAAAGTATTTCTCCTCATAGCGCGTTTCTTCTGAAATATGTCTCACGACTGCTGAATATATTCATTTAGAGTTTGTTTAAACTTGATTGAAGTTGTAAACAATGGAAGCGCTGTGGACGAACAAAATCGAAGACCCACTGTCACTGATGAGCTTCACGGTTCCTCCGTTGAGGTTACTGTCCGCGGCCATGTGGCAGGTGACCGAACGCAGACAGGTGAAGCATTATGGGATGCTGGAGGAGTTTGTGAGTCTAGTAACAGAGACCATTCCAGAGCTTCTGAATCAAAACCAAAGAGCCCAGCTGATACTTGGCTTACGAGCAAGGCATCTTCTGGAGCTCTGTCGGGGTAAACATCAGGGTAGTCTGAAAGAGATTCAGCCCCACCTGAAACGATTATGCCGTCCTCGAGTCAACAAAGAGTTTGCTGATGAAGACATGGAGGAATCTGAGACATGTTTTTTGGACCTCGTCCGAACCCTTATCAGCAATCCCAAAGAGAAGGAGCATTACTTCCAGAATATTTTCCCGGAGGAATATGGACCCAAGTTTGACAAAAACCTGCACGCACTGATGGAAGATTTCCTCCTGAAGCTGGATCGCATGGTGTCTGTCCCAGATCTTTCAGAGACAGTCTCTTGGCTCAGGACATGCCCGTCTCTTCTGGATGATTGCATCGATTCAGTTTCAGTCCCAAAGGATATGAAGAGTCTTCTTGAACACCACACAGCTAAAGGAAATCTTCAAGACAGTGAGGGCAACAACTGCACGTTTTCATCCCAGTCTCTCCCACCGCTGGTTCAAGTCGTCATTTCCAGCGATCACACCGAGTCTGGAGAACCGTCCGATTTAAATGGTCAAGACAATGACGATGAACAGGCGTCTAAAACCTCGTCTGATGGCTGGACGATTAAAAAGATCAAATTAAAAACTGAGACGGAGGAAGAGGACAATGATCAAAACTGGCCAATCACAGAGGCAAAATCCACAGGAACGAGGGACGGCTATGATGATGGCTGTCTTGGGGAAGAGCCCAACCAGACGCAGAGCAAAATAAACACCAGAAAATCATTGAAAAGGAAAAGAGATGAGATTGCCGACACGTCCAGGGAATACACATTTATCAATCATTTGGGGGCATACACAGAAGAGTCTTCCTACCAGAGCTCTGATGCTTCAAAAGTCCCTTGGACCGAGGAAGAAACGTTCGGTCTTATTGACATATGGGGCAAAGACAGCGTCCAGCGAAGCCTGAAGGACTGCGCTCGCAACCGCCACATATTTAACCTCATCTCTAAGAAGATGTTTGAGAGAGGCTTCACCAGAACAGCAGAGCAGTGCCACACCAGAATAAAACGCTTGAAAATGAGCTTTCGACAGTACCACGACAGCATTTTGAAAGGAGAGAGAGCGGATTGGAAGTTCTATGATGTTCTGGAGAAAATTCTCTGTGGTAAAGATTCGGCAGAACAGGAAGACAGTAATAATGACGTCAGTGTTCCAGAAGAATCTTCAGGACAGCAGGCGGAAGATGAAACTGACTGGGAAGCTCTTAGTCACGCTGGACTAGATGGCACCAAGAATATCTCCTGGACAGACTTGGAGACGCAAACGCTCATCAGGATCTGGGGAGAGGACAAAACGCAGCGAGAGCTGAGAGGGGTTCTCCAGAACGGACACATCTTTGCCATGATCTCCAAAAAGATGTCAACTCATGGCTACATCCGGACAGCAGAGCAGTGTCAGAGTCGAGTGAAGAGACTGAAGCTGTGCTTTAAACAGGCCTATGAGAGTAAAAAtattgAGGGCAAAGAGCCAGCAGAATTTAAATTCTATAAACAGATGGAGAGAATTATGGCTAATGAAGAGCCATGTTCATCGCAGATCAAAGAGGAGGAATCAGCCGATATCGAATACCAGGTGTACAAGTACCAAGAAATAGaaacagcaatgaacTGTATGGATGATAGAAAGAAGGTGGCCTGGTCTGATGCCGAGACGCTGATTCTCCTTCAGTTATGGGGCAATGAGCAGGTCCAGCAGAACCTTCAGCGCTGCCCTCACAATGGCCACATCTACTCTGACATATCAGAGAAGCTGAACACACACGGATACCTGCGCACCGCTGAGCAATGCCACACCAGAATCAAGCGACTCAAGATCAGCTACCGGCAGTGCAGGGACAGCATCAGTTCACCTGAAGCTGAACGAGTAGAGTTCAAGTTTTATGATCTGATGGAAGATATTTTTCAAAGAAATGCTTCCTCCAAAGCGTCAGGAGAGAATGAAGACGACAGTTGCATCACATCAGAATCGCAGGGCAGCAGTGCAGAGCAGACATCATCCTGGTCAGACTCTGAAACTGTGGCTCTAATAGACATTTGGGCGGATGATGAGGTGCAGGAAGCCCTGAGAGAATCCGTCCATAACAACCACGTGTTTGCTGATATAGCAGAGAAACTGAACAGccagggattcttcaaaacaccAGAGCAATGCAGATGGAAGATCAAGAACCTGAGCAAGAATTTCCGGCAGTGCTACGAAAGAAAAAAATGTGGCAGAGAGAATGTAGATTGCAAGTACTATGATAAACTGGAGCAAGTTCTGGGTGATGAGGCTTTTTCCATGGATGTCTTTGAAGAAGATGACCAGGATGCAGATTACCAGCCGACTGCCATGGTAGCCGTTTCTGAATCGGGCAGGAAAATGACCTGGTCAGACCAGGAGACGCTTGCCCTGCTGGAGATCTGGGGTGATGACCGTGTGCAGCACAGCCTGATGTCCTGCCCTAAAAACAGGCACATCTACAGATATATTTCTAAGAGAATGATTGCATTGGGCTTCAACAGAACGGGCGTGCAGTGCCACTCGCGTATCAAAAGACTCAAGTCCCAGTTCTACTACGATGGGGAGGAGTGTAAATTTTATGATCAACTGGAAAAGATTCTTTTAAAGGACAGAACGTCTGAGGACAAGGAGATGAGTGAGCTGGAGTCCATAACTGATTCGGATTCAGACTCCCTCGCTCTCTCCAAACCTCTCACCACGGACGGGCCGAAGCTGGCGTGGGGTGACAGCGAGACACACACTCTAATATCCATTTGGGGCAGCGATGGCATCCAGGAGAGGCTGAAAGGCTGCGTCAAACGTAAACCAGTTTTCCAGCAGATCGCGTTGATTATGGCTGAGAAAGGCTACAGCAGGACTGATGAACAGTGTCGCTCCAGGATCAAAAGACTGAAGGCCAGTTACCGCCAGCACCTTGACAATTACAGGAATGAAGGAGAGCAGGTTGAGTGGAAGTTCTACAAACAGcttaataaaatatttcagaaatacCCTCTAGATGATACCGAAACTACAGTGCAGGAGACAAAGGCAGTTTGGAGGAAAAACCCAAGCAGGTCTGCAAAAGCACACAGCTCAGACTGACGATGCTAAACTAATGCATCCGAGCGAGACATACTTCTGGATATCTGAGCCATTGAGACAGTGTAAACTGAGGTGTATCTATCATGTGGACTGTGGAGAACGGAGTAAGAACACACTCAGTCAACAGACATACAGAAATGTGCACACCGATCCTGCATAGCTCTACATattaaggactttttttttttaatgatgctgTTGTCATTTGGTCTCAGAGGGTCACATGGTAAAATTTAGAGATCTGCAGAACTAAAGAGGATATGCATGGATGTTACTATAGAAGTGACTGCCATTACGCCCACTGAGTAACAAAGAGACTCAGCGGCAGCATTAGTGTAGTGTGAAGTAAGCAAAAACATGGTTAACATGAGGGAAAGTTGTTTGGAGCTATTATTTCACAGACTGCAAACCCACTTAGCAATTTAGTGCTTAAAAGACGTCCAATAGACATCCAAAAATAGACATCATGGCTAAAacgaggctaaatttgggctgtaagtgaaaatctaatagacaatAGTTCAAAACTAGAGTAAACAGGATTGAATGATAACATGTGAAGTCTGTCTTTTGCACTATTggtagatgtctattagatattcactgacagcccaaatttcgCCTGGTACTAGTTAAGACATCTATTATTTAAACAAAGAAGTTCTTGCTGGGGAAAAACACTGAAATTTTAAGTAAATAGCTGCCTACTAGTCATTTTACTGAATGTTTTGCCATTCttttagtttagatttttaaTGCATCCATAATGCACAAGATCTGATTTGAGGAATTAAAAGATTTGCGTTTGAATTTAAAGCAGGATTATTTCATTAGTTTCATATTTTGGATCATAATGAAATAACTAGACCAAATTCAATCCATTTTTTTTCCTCCTGTTGCAGAGCTTTTCTGTCAACTAAGTGCATAACCGATCATAAAAAGTCCTATACTGTATATTTGCATCATAAAACACTGAAGAAATACCATTTGGTAGGAAAGAATAATCTTTTAAAGTATGTTTGCTAGATGTTACaaattttaatatatacattatacaaATGCTACGTCACTGTTAAACAGGATAATGCCAAAGCTCATTGATCACATCTCCATCTCTTTTTAAGAGTATATCTAATGTGTACTGGCATGAGCCAATTGTATATAACAATACAATGCATTCTGCTCAATGATGGGAAAGTGAACAGTATTACAGTTTTGCTAGACAAATACTGCTTCAAGACAAACATTAACAATGGTTTAAATCCAACACTGTGTTGTTTAGGAATTTTACTGTGCAATAAACAGATTATTTATTTCTGATTCTTTGTCCAgcatgattgaaaaaaaaaacgtaatgaTTATGACAACAGGCTTTCTGgacttgaagggatagttcacctaaatatttaaatctgCCATTAACTTACTAACCCTCAGGCTGTTCAAAATGTAGATGAACTTTTTCACTTTAGTATAACACTGAAGAATATTTGAGCTGAAACTGGTCCTTGGTGATTTAGAAATCAACAGCTAGCAGGCCTTCAAgagtaaaaataaatttatgctggaaaaaaaaaactttaatactgAATATTCTACAAGTAACTGAATGCTGAAagtaatgttttataaacaaatttcgggaggagcacgaTCAGTCTTTGACCAGGCTAATTCATCAGACAattattctattatccaatcagctcatGACCAAACCCCTATAAACAGTCAAACACGTCATACCTCTGTTTTCTCTCGACTTCagcgtccctccaccaccccaactccacactattaaacccgatacctatttaaatctgaggggggagcgttctggagcCAGGCTAGACACTGGGCTCGGACCTTATCTCGCTCTATCCTGATGAGGGAACAACACGAGTTAGGGTGTcttcccgagctcagagccctttCCCCGcatagcacgccaaatatgcatattctattcagtcaaatatctgtgagtgtgaactcAGCATGACCTTGATTCAACTGCCTCATCAACCATCTATCTTGCCTCTTTGTACTTCGACAGGACCCACGGGGTATTTatttcatctctttttttttgaGTGACCATCAAAGTACTAGTTGACTATTTTATAGATCACCAAGGGCCACAGTTTCTAATGTTAtgctaaagacaaaaaaaaatacaaccaacAATACATTTGAAGGCCTGAGAGagagtaaataaacagcaaatttgAATTTTTTAATCATCCCTTTAAGTGTTATCAACATAAATGCCATCAACTATGTAAAGTACAAAGGTATCTTGCCTAAACAAGTATGGTTTGAAAAAACATGTTTccttttaaagcaggggtgtccaaactcggtcctggagggccagtgtcctgcatagtttagctccttcaacacacctggctggaagtttctagtatacctagaaagagcttgattatctggttcaggtgtgtttaattggggttggaagtaaaatatgcaggacaccggccctccaggaccgagtttggacacccctgttttaaagtAGTGATTAGTTACACCATAGATCGCAAACGCGACGGCCTGGAGAGTTGCAGCTCTAcaccaaccctgatcaaacacagctgatctcattaatcaaggtgttcataactcttttgaacaccttgattaattggatcagctgtgtttgataggcTTGGaggaaaactgtgcagagctgcggccctccaggaattgagtttgagacccatgagTTACATGATTAACTAGTCACTTTAATTAGCCAGATAGAGATGTTCAGTTAAGGGCTTTTGGGATCTGGCTTCGCACGGCCCCGAGTTTGGTCGTAGCTTCTTCTGCGATTCCCACGTTCCCCAAGATGCGTCCTCTCATGCTTCTTCAGCGGTCCGGCAAACTTGAAGCTCTTTCCGCAGTGGGAGCACTGCCACGGCCGCTCACCTGTATGGCTCAGCATGTGGTTCTTAAGATGTGACGAGTGCTTATAAGTCTTTCCGCATCTTTCACAGGTAAACGGTCTTTCGCCAGTGTGCACGCGCTCATGTCTCTTCATATTCCCAATCTGAGAAAAAGCCTTTCCGCATATTTTACAACGGAATGGCCGCTCTCCGGTGTGTATACGCAGGTGGCATCTCAGCATCTCTGGTCCAGCGAACGTCTTGTGGCAAAGGGTGCACGGGATCTTAAGTCTGGGTCTTTCATGATTGCGCTGGTGCTTTTTCAAGTCGAACATGTAGACGAAAGACTTGCCGCAGATGGAGCACAGATACTGGCGCTCGCCTGCATGGTAGCCTTTGTGTCTTCTGAGCAGGCTGGCGtagatgaaactcttcccacactggctGCACTTGTACGATCGCTCCATGGAATGGTAGCGGACGTGTATTGACAGCTTAAAGGCTGTGGGGAAACTTTTGTCGCAGTGAGGACACTGGTGGAGGTTTTCTGAAGTGTGGCATTCGCGGTGGATCTTCAAATAGGAGCCTTGCGAGAAACTCTTGCCGCAGATTGTGCACTTGTATGGTTTTTCGCCAGTGTGCACACGGATGTGCTTGATGAGGTCGGCTTTCTTGCGGAAAGTCTTGATGCATTGCGAGCATTTGAATGGTCTGGCGAGCgagtgtgttttgatgtgattggTCAAGAAACTCAGACACCTGAAGCTTTTTCCACAGTCCGAACACTGGAACGGGCGTTCGccagtgtgtgtgcgcatgtgattCCTGAGCAGGCACTCGAAGCGAAACTCTTTGTGACACTCTGGACAAGCGTGTCTTTTCTCATCCTGTGTTGTTTGGGATTCCAGGGAGGCTGATGCTGACTTTTTGGATACCGCAGCTCTAGGTGGACTGCTTTTTCTGTGTATGATGGACTTTACAGATGGCGGTCTTTCTATGACAGGAACGAAGATGGTCTCCTCCCTCACGATCTCAACAGGAGTCGGAGGCAAAACAGGCAGTGAGACGCCCTTTCCAGTCAACTCTGATATCCACTGCTCTAAACTGACCTGCCGCACACCAGGCGTTTCCACCATTTCTGATTGCTCGAGAAACTGCACTTCCTCTCCTTCATTATCAAACTCTGACACCACTACCGTAGAGCCGTCGGCGGTGAGATAGATCTGCTGGACTTCACATATACCCGAGTCTTTCTCTTCGCAGAGAGTCTCCTCTTGTTGTAATCCGTCCTCTGCTTCTTCTATTGTCGCAAACTCCTCAGTGACAGCTAAAGTCTCTGCTTCTTCTGTGTAGCTCTGAGAGGGGCTCATTATAGCGATGGCAGCGTGATCTGATTCGGATTGGTTCTCTGTGGCTTCGGATTCAATGATAATCGTCTCTTGTGCAATGGAAGTGGGAGGCAGAGGTTCCTCTTGCTCGATGGTAATGGTAGGGGACATTGTTTCTTGTGCGATTGGATGAGGCAAACAAACTACTTCCGCTGCAGAGGGAATGGACACTGTTcagatgaaaagaaaaacaaaaacttatCAATTATATCTACACAGCAATACCTTCAACAAGTTTATGGGCGACATTTCTTcctatatttataatttcattttttgcgGCAAAAAATGATGTAGACTAGAGGTGTGCGATATTTTCCTTAAGTGACtgtttacatcagggg

Function

GO:

id name namespace
GO:0016233 telomere capping biological_process
GO:1904356 regulation of telomere maintenance via telomere lengthening biological_process
GO:0070187 shelterin complex cellular_component
GO:0005515 protein binding molecular_function
GO:0042162 telomeric DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050306-34 Predicted to enable telomeric DNA binding activity. Predicted to be involved in regulation of telomere maintenance via telomere lengthening and telomere capping. Predicted to be part of shelterin complex.

Ensembl:

ensembl_id ENSDART00000067371

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057569 lncRNA upstream 36920 5302949 ~ 5304672 (+) True XLOC_027046
TCONS_00057567 lncRNA upstream 375042 4963839 ~ 4966550 (+) False XLOC_027036
TCONS_00053331 lncRNA downstream 52748 5420906 ~ 5421470 (+) False XLOC_027052
TCONS_00057570 lncRNA downstream 52748 5420906 ~ 5422958 (+) False XLOC_027052
TCONS_00057571 lncRNA downstream 52748 5420906 ~ 5424158 (+) False XLOC_027052
TCONS_00057576 lncRNA downstream 52748 5420906 ~ 5454556 (+) False XLOC_027052
TCONS_00057578 lncRNA downstream 52748 5420906 ~ 5454556 (+) False XLOC_027052
TCONS_00053324 mRNA upstream 1062 5334439 ~ 5340530 (+) False XLOC_027048
TCONS_00053320 mRNA upstream 3122 5334008 ~ 5338470 (+) False XLOC_027048
TCONS_00053328 mRNA downstream 10180 5378338 ~ 5387478 (+) True XLOC_027050
TCONS_00053329 mRNA downstream 23936 5392094 ~ 5494298 (+) False XLOC_027051
TCONS_00053337 mRNA downstream 138794 5506952 ~ 5522437 (+) False XLOC_027055
TCONS_00053338 mRNA downstream 138900 5507058 ~ 5521500 (+) False XLOC_027055
TCONS_00053340 mRNA downstream 155532 5523690 ~ 5530441 (+) False XLOC_027056
TCONS_00053314 other upstream 67754 5255078 ~ 5273838 (+) True XLOC_027045
TCONS_00053296 other upstream 453088 4834085 ~ 4888504 (+) False XLOC_027034
TCONS_00053293 other upstream 650751 4690726 ~ 4690841 (+) True XLOC_027031
TCONS_00053290 other upstream 954584 4376498 ~ 4387008 (+) True XLOC_027026
TCONS_00053267 other upstream 2759561 2581916 ~ 2582031 (+) True XLOC_026997
TCONS_00053330 other downstream 34957 5403115 ~ 5416987 (+) False XLOC_027051
TCONS_00053333 other downstream 97840 5465998 ~ 5478348 (+) False XLOC_027051
TCONS_00053334 other downstream 120123 5488281 ~ 5494298 (+) True XLOC_027051
TCONS_00053336 other downstream 138794 5506952 ~ 5515862 (+) False XLOC_027055
TCONS_00053350 other downstream 410071 5778229 ~ 5784871 (+) True XLOC_027061

Expression Profile

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