RNA id: XM_036961084.1


Basic Information

Item Value
RNA id XM_036961084.1
length 1886
RNA type mRNA
GC content 0.49
exon number 15
gene id slc47a3
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 18757346 ~ 18764696 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAGAGCTAGGGAGTGACAAAGGATGTCATCAGATAGGAAGTCTCGCTCTGGCAGCTGGCAGCTAGAATACCACCTTGTTCTCACTTGACCATGCAGACTTTTCTGAGCGACAGTCTTTAGAAATGGATTCTAATGGAATTGTGGAGAGCAGGATGAATGGGAATGAATTGACAATATGTGGGAGCTGTTTGAGATGTATTCGCAGGTTGATTCCTGTTGAATTCAAAAAAGAAATTATTGAATTATCAACAATGGCTGGGCCTGTGGTTATGGCTCAGCTCATGGTCTTTTTAGTTAGTTTCGTCAGTACAATTTTCTGTGGCCATTTGGGGAAGACAGAACTGGCAGGGGTCACTCTCGCCATAGCTGTGATTAATGTTACAGGTGTCTCCATTGGGTATGGTTTATCATCAGCTTGTGACACACTCATATCTCAGACTTTTGGGAGCCGTAACCTCTTGAAAGTTGGGGTCATTGTACAGAGAGCCATCCTCATTCAACTTCTGGCCTGTTTCCCATGCTGGGCTGTTCTCATCAACACAGAACCAATCCTCCTGGCTGTCAAACAGAGCCCAGAGGTCGCCAGGCTGTCTCAGGTGTATGTGAAGATTTTTATGCCAGCACTCCCAGCCACATTTATTTATCAGCTGGAGGCCAGATATCTACAGAATCAGGGACGAGCCTTGTGTTCCCCTGTAGGTTGGTCTTGGGAGTGCTTGGAAGACTGGGGCACCTACATCCACCTGGCTATTCCTAGCATGATCATGCTGTGTGTGGAGTGGTGGACTTATGAGATTGGAGGCTTTCTAGCAGGTCTGATAAGTGAGGTGGAGCTTGGAGCACAATCAGTCGTCTTCGAACTGGCAAGCATTTGCTACATGttcCCTCTAGGGTTCAGTGTGGCAGGCAGTGTGAGGGTGGGCAGTGCTCTGGGGGCTGGAGATACAGAGCAGGCCAAGCTGTCTGCCAAGCTGGCCATGTTCTGTGCTGGGTCCGTTTCTGTGTGCTTGTCGGTTCTTGTTGGGATACTAAAGGACAAAATCTCCTACGTCTTTACATATGATGAGCAGATCAGAGAGAGGGTTGCTCAAGTTATGGCTTTCTACGCCCCTTTTCTTCTGTTATATGCAATATCGGCTGCCTCAGGTAGTATTATAAGGGGGGCAGGGAAGCAGAAGGTTGGGGCGATATGCAACATCCTGGGTTACTATGGGGTTGGCTTTCCTATTGGAGTGTCCCTGATGTTTGCTGCCAAGCTAGGAATCATGGGCCTGTGGACCGGTCTGTTTACCTGTGTGTTCCTACAGTCCTCCTTCCTCATCGTCTATCTATCCAGAATGAACTGGAAGAAAGCCACTGTAGAGGCCCAGATCAGAGCTGGGATACAGGGGAACTCTACAGACATGGACATGGCCCCAGAGGCCCATTCAAATGATTCAGCTCCATGTGAGGGCCACAAAGACAGAAATGCCCTGGCTGAAGATGGGGCTGAGGCTGATGGTGAGGCTGGGGACAGGGTGGCCCTCAACAAGGTGGGGGCACTGCTGGCCCACAGGGCCCTGATAATGCGGAGGGCCCTGGCTCTGTGTGTCATGCTCTTCATCCTAGCCCTGGGAATCATCATCAACCTACTGCTCACCAACCTCACTTGATGAACACAGAGTGAGTTCCAGAGAAAATGTTCCAGTCTTAAAATGAATGGGTTCCAGAGATAGCTCCACTCAGTGAGAGTGGTCAGAGGACCACCTAAGCAACGAAGCAGAGAAGATAGGAGTGAAGAGGAGCTGGCCAAACTACAGTATGGTGCCAAAATTCCAGTACTGTTGGTCTGTGAGGAGCCAAGGGGTTACTAATTCTGGACCTTTTCATTAATCATCTGAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2184305 lncRNA downstream 1860 18754988 ~ 18755486 (-) True G1909911
TU2184296 lncRNA downstream 17064 18740065 ~ 18740282 (-) True G1909902
TU2184258 lncRNA downstream 79953 18675677 ~ 18677393 (-) True G1909869
TU2184257 lncRNA downstream 82668 18674079 ~ 18674678 (-) True G1909868
TU2184256 lncRNA downstream 82778 18674079 ~ 18674568 (-) False G1909868
TU2184310 lncRNA upstream 1520 18766216 ~ 18766447 (-) True G1909914
TU2184311 lncRNA upstream 1758 18766454 ~ 18766762 (-) True G1909915
TU2184231 lncRNA upstream 8906 18773602 ~ 18775173 (-) True G1909845
TU2184320 lncRNA upstream 46375 18811071 ~ 18811495 (-) True G1909924
TU2184325 lncRNA upstream 50005 18814701 ~ 18815028 (-) True G1909927
XM_021582593.2 mRNA downstream 191215 18561930 ~ 18566131 (-) False LOC110503933
XR_005039333.1 mRNA downstream 192886 18561930 ~ 18564460 (-) False LOC110503933
XM_021582587.2 mRNA downstream 195982 18504076 ~ 18561364 (-) False LOC110503929
XM_036961391.1 mRNA downstream 195982 18504076 ~ 18561364 (-) True LOC110503929
XM_021582589.2 mRNA downstream 205337 18504076 ~ 18552009 (-) False LOC110503929
XM_021582599.2 mRNA upstream 10560 18775256 ~ 18787910 (-) False slc13a5b
XM_036962081.1 mRNA upstream 11219 18775915 ~ 18787927 (-) True slc13a5b
XM_021582606.2 mRNA upstream 24523 18789219 ~ 18794812 (-) True LOC110503941
XM_021582601.2 mRNA upstream 30558 18795254 ~ 18813746 (-) False wdr81
XM_021582600.2 mRNA upstream 30558 18795254 ~ 18813800 (-) True wdr81
TU2183897 other downstream 322554 18432024 ~ 18434792 (-) False LOC110503924
TU2183901 other downstream 322554 18432024 ~ 18434792 (-) True LOC110503924
TU2182802 other downstream 1478936 17277807 ~ 17278410 (-) True LOC118944080
TU2182093 other downstream 2596120 16158846 ~ 16161226 (-) True G1907951
TU2182062 other downstream 2624784 16131990 ~ 16132562 (-) True G1907922
TU2184703 other upstream 203366 18968062 ~ 18973230 (-) False LOC110503944
TU2184704 other upstream 203366 18968062 ~ 18973230 (-) True LOC110503944
TU2184852 other upstream 395753 19160449 ~ 19162158 (-) True G1910398
TU2185002 other upstream 568145 19332841 ~ 19333225 (-) True G1910539
TU2185117 other upstream 726021 19490717 ~ 19491608 (-) True G1910651

Expression Profile