RNA id: XM_021582601.2


Basic Information

Item Value
RNA id XM_021582601.2
length 8318
RNA type mRNA
GC content 0.53
exon number 12
gene id wdr81
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 18795254 ~ 18813800 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACGGAATAGGGAAGGGGGTCATGTGAGTTATCGGATTCAAAACATCCTCGGCTGGCTACTTCTTTCCTGTTACCCAATTAACCGAAGTTGCTTCTGAAAGAGTGAGTACACTTGTGCATCCACTCAAATAGAACATACGAATTTATTTCGGACTCAGTATGGAACCAGACGTTGTATAAGTTACTCTCACAGGAAACCTTGTCAGTCACAACCCTGCTCCTACAGGTCAGCACTTATGCCTTCCatggaagggtgagagagaggcatCCTCTGTGCTGATAGTGAGGAGGGAGTGGGACGACAGCAGGACAGTGTGACTCTCCTGTCTGTCAGGTCTGAAGAGTAGGTCACCATGGAGTGGCTAGTGTCGGCTGTAGAGAAGGACCTAGGGGTGGACCGTCGGCAGCTAGGTCCAGGGCCCCGGCCTCAAGAGCTGGTGGCCCTGGTCCCCACCCGCTGGGTGATGGGCCTAAGGGAGAGGAGGGTCACCCGTTGTGCCCGTTCAGAGAGCGCTAGTGAAGCAGAGATTCGCACTTACCTCCAGTGCTCCCTTGTGAAGCTGCCTCCTGGCTGGACCCGAGTGTGCATCCAGGGCCTAAGGAAGATCAAGCTGAGCTACAGGCTGACAAGGGACCCAGGCTGCCAACTAGTCTCCCAGGATTCTTTCATGAAGACCATGCAGGGTGTATCACAACGTAATTTCAGAAATCTGTGGTGCGATGCTCATCACAGCCACGTGCAGCCCTATTCAGGGGCTACAGAGCAGATGCATGTAGCAGCCATAGATGCGGTGCGCCAAGCGCTGCAGAAGCTCTTCTGCTCAACATTTGTCTCCATCCCTTTGTCGCCATCCCTCTCCCCTGCCAGAGATAAGGACAAAGACAACCCATTATCCCCAAGCAGCTCCTCCTCTAAGCACCCCTCAGACCAACTGTGTCCTAACGTCCTCCCTGCTGAGTGCCTACTAGAGTCAGCAGAGATGCTCTACGTGGTTCTCCCATACACCCAGTACTCACTCCACGACATCGTCACCTACAGCCCAGCCAAGCTGGCCAACAGCCATGCCAAAGTGCTGTTCATCCTCTACCAATTACTGATCGCGTTGCGGGCCTGTCAGGCATCAGGGCTGTCCTGTGGAGAGCTCTCCCTGCAGGACATAGCGGTGGACGAACAGCTCTGCAGCCGCCTCAAGGTCACCCTGGCCCATTATGAAGTGCTGGGGGACGACAGAGAGGCTGAATGCTATGTTACTGAGGGACAAGTGCCAAGAAGCATCAAGGCGAGGGACCAGGGCCAAGGTGTGTACAGTGACCGTGATAAGAGGCTGTGCAGAGATTGTTTTGATGAGCTCAAGTCCTTGGTCCTGGACTGGGTCCATGGTAGAGTCAGCAACTTCCGCTACCTGATGGAGCTGAACCGGTTAgctggacggagggagggagacccTAACTACCACCCGGTCCTGCCCTGGGTGGTGGACTTCACTGTGCCATATGGGAGGTTCCGTGACCTCAGGCGGTCCAAGTTCAGGCTGAATAAAGGAGACAAACAGCTGGACTTTACCTATGAGATGACCAAAGAAGCCCTTGCAGCAGCGGTGGCTAATGGAGGTGGGGCAGTCAGTATTATAGGAGACCTGGGTCTGGGTGGATCTGTAGGTGCCGGTGGTTCAGGGCAGTCTGAACACCTACACGTGCCCCATCACATCTCAGACGTGTTGTCAGACATCACCTACTATGTCTACAGGGCCCGGCAGACACCCAAGTCAGTGCTGTGCAGCCACGTCAGGTCTCAGTGGGAACCGAACGAATACCCAGCCAGTATGGAACGCATCCAGAGCTGGACCCCGGATGAGTGTATCCCAGAGTTCTACACAGATCCCTCCATATTCCGCTCCATCCACCCTGACATGCCAGATCTGGAAGTTCCCACGTGGTGTAACTCCTGTGAGGAGTTCATTGAGGTTCACAGATGCCTCCTGGAGAGCCGAGAGGTGTCTCAGCAGCTGCACTACTGGATAGACCTGACGTTCGGCTACAAGCTGTCCGGTAAAGAAGCCGTCAAGGCCAAGAATGTGTGCCTGCACCTGGTGGACAACCACACCCATCTGACCAGCTACGGGGTGGTCCAGCTGTTTGACCAGCCCCACCCGCCCCGCCTTGCACCTTACCAGTACTCGCCACCTGAACCCCCTCTCCTGGGCCCCGCAACTCTCAACGTGCCACCTCTACAGATCCCACCGCTAGATGCCATGGTGGACGGAATGGTCCCAGAGGCCATGGGGTGTGAGTCCAGTGGCTGGACCATGGTGGACCGAGATGAAGAGCTAGAACAAGGTATGGAGGCTCTGGACTCACTCAGTGGAGGGATCTCTACTGGCACCTCCACTACCTCCTCAGTTCCTCTACCTCTCATCAGCACTGCAAGGTCTGGGGGGAAGACTGGAGGAGAGCACCCAGCCATGGTGGTGTCCCAGTCTCCCAGCTCTTTCCCTGGGGAGGGGACAGCAGGTAATGCCACCAGTGCCCTGGGCTCTGGCATACGCAGTGCCATGCTACAGAGAGGGGGCATCATAAACAAGAAGCATGGAGAGGGGAGTTTGAGTGGTGCCACCAACACAGAGGACTTGAAGATCACCCTGCCTGAGGGCTTCAGCCCCCTTCAACCTCTGGAAGAGCTGGAGAAACTCGACAACTTCCTGGTGAAGAGCCTGCATGCACAAGTCTGGCACCAGTCTGACTccaggaaggagaggacaggacctcCACAATGTCTCCCCTCGCTAACAGAACTCTACCAGAGGGACATGCAGGCTCTTGGCGTCCTCATAGCAGAGATCTTCTACTCGTCTAAACTGCGGGGTGTGAAACCAGGCACTCCCCTGAGTGAGCGCTTCCAGGCTGTGATAAAGCTATGTTCGGCCAGCCTGCGTGACGTGCCCCTGCCACTGCATCATGCTCTGGAGACACTGCTACATCTACGCCAGCACTCCTCCAAAGCCAAAGTAGAGAAACCATGTGGTCCTCGACCTCTTCTTTTTAAATACGACCCCATTTATGAGGGTCTCCCGCCCCCAAACCCCTGTCAGTTACTGAGCCCCATCCTCTCCCCATTGCCTTTCCCCACATATTTCCCTGCCCTCCACCATTTCATCTACTCCTACCATTCCAAGATGGAGACCACCTGCAGCCTTCAAGGTCGCGATGTGGTCTTCCACCTATGGCAGCAGCTGGAGACACTGTTACAGGGAGTCATCACAGCTGAGGGGTTGGAGATCCTCCTGCCCTTTGTGCTGGCGCTCATGCTAGAGGAGTCTACTGCTGTGTATGCTGCCTGGTACCTGTTTGAGCCCATCTCTAGGGTACTCGGGCCTCGAAACGCAGCCAAGTATCTCCTGAAGCCCTTGGTCAGTGTGTATGAGAACCCGCGGTGTCTCAGAGGTCGCTTCTACCTCTACACAGACTGCTTTGTTCTGCAGTTGATCGTCAGACTGGGTCTGCAGGCCTTCCTGTCCAGCCTCCTGCCACACGTGCTCCAGATCATATCTGGCTTCGAGAGCTGCAGCTCGGGCTCTGAGCCCCAATGGGAGGCCAGCAAAGGCCTGAGGGGAGGGGCATGTGacctaggagaggaggaggaggactacCAGGAAGGCAGGCCGTCCTCAGGCTCTGTGAGTGGGAAGGTGGGAGGGGGAAGTGGAGGGGCTGGGGGTGTAGGAGTGGGGGGAGACCCAGGGCTGGTGGACTACTCCTCAGGTATCAGCCTCAATGACCAGGTGTTCCTCTCAGAGGGGGAGGACTTCCAGAATGGCTTCTATGTCAACAATGGAGCAGGGGGAGCCACTGGGGGGAAACTGCAGAGCCAGAACTCAGCAGCAGGAGGCAATGAGCAGGACCAGGAGTCTTTGAGCGTGGGGAGACTGAGCGACAAGAGCAGCACTAGCGAGGTCTCTATCGGAGACGCCGACTCCACTCGGGACCGAGCCAGTCTGAAGTCAGCTGACAGCAGCCAGGACCTGAAGCAGGccagtgagggagaggagggaggggagctggaggaggagactgaggaggggaaggagagagggacaggggagggCAGTGGTCCCAGCCTAGAACTGACTCTATCTGGCTGCACAGAGGAGACAGTGGCCACCCTGGAGGGAGAGTTTGTCAATGGCATGGAGCTGGAGGACGCACAGAAAGACATGGTGGAGGATGAGCATGACTCTTCAGAGGATTCGGAGGAGAAAGAGCACAAGATCCTTCTAGATACGGTCTGCAAGACAGTTAGATGGCTGTCTGCAAAGCTTGGACCAACAGTGACGTCTCGATATGTGGCCAGGAATCTGCTCCGGCTGCTCACCACCTGCTACATTGGCCCGGAGAAGCACCAGTTTGTGGCTCCGGTGGTGTCGGAGGAGAGCAGCCTGGAGAGTGTTGGGATGGGCAGTGTGTATGAGAAGAAGCCTGTGGTTGGAGACCAGACAGCAGGACCAGTTCTGGACTGTCTCATCTACATCGCACACCTCTATGGAGAGCCTGTACTCACCTACCAGTACCTGCCCTACATTGGATACCTGGTGTCTCCCCCTGTGTCCTGTCGTCTGAACACCCGTAAGGAGGCAGGTCTGCTGGGTGCCGTGGTTCTGACCCAGAAGATCATTGTGTTTCTGTCGGACTCCACCCTCATGGACATGCTGATGAAGATCAACCAGGATGTTCTGCTGCCCCTGCTGGACCTGCTCACCTCACCCAGGATGGGGTTCCCCAGTGGAGTGCAGACACGTTCGGCTGTGTGTCTGAAGACCCTCAGCCTAATGGCACTCATCTGTCTGCGCATCGGCAGGGAGATGGTGCAGCAACACATGGTAGAAACCCTGAAACGCTTCTTCACAGTCTTCTCCCTGCTGCAGTGCCTACAGGGACAGATGGAGAGCGCCCCCCGCAGGGAGGTGGGAGAATACATCTTGTTGGATGTGCGTACGCCGGACGGGTCAGAGGTGACGTGTGAGCTGGGGGTTCTGGAGGAACTGCAGGCTGTGTTTAACCCTGAGATGGCATACGCCTCCTACATCCCCTTCTACTGCCTCatagGCGATGTAGCGATCCGTAAGCTGGTTTCCAACCACGAGCTGGTCTGGAGTTTGGCCCAGTCCTACCACTCCAGGGTGAGCCCTGGCAGTCCTAATGCCAACCCCCCAGCAGGGTCCAAGGACAGGTTAGAAATGCCCCCTACCACCTGCTCCATTGGCCCCTCCCCAGGTCTGGGACGCCATGTGGGCCGCAGCCCCTTCCCTGCCCCCTACAGCTCCTCCACACCCCTGGGCTCAGACACCCTCCCAGAGTcaggcacctttggcagccatctGGTGGGCAACCGCATCCAGGTGGCCCGTGACTCTGAGCCAGGGTGTGGgagccccaacctgggctcgttAGACAACTGGGGCCACCCCCGGCCTAGTCATACTCAGCCTGTCATCACATCTGCCTCCACTTTCACCACTCCATCCCTGggcccctccttctcctcttactCCTGGATGGTGGGTCCTACCCCCGAGGACAGCGCTCTGAAGCAAGAGCTCCCTCGCAGTGGCCGTTCCCTGCAGGGCAACTGGCTGGCCTACTGGCAGTATGAGATTGGTCTCAATCAGCAGGATCCCCACTTCCACTTCCACCAGATCCGCCTGCAGAGCTTCCTGGGCCATTCGGGCGCTGCTAAGTGTTTGGCACCACTGGCTGGAGAGGACTACTTTCTGTCTGGCAGCAAGGACAAGACGGTGAAGCTGTGGCCCCTCTATAACCACGGCGACGGGACACGGGAGGTGGAGCCAAGGTTGACCTACACGGATCATAAGAAGTCTGTGTTCTATGTTGGCCAACTGGAGGCGCTCCAGGAGGTGGTCAGCTGTGACGGCACCGTGCACCTCTGGGACCAGTTCACAGgtAAACAGATCCGCTCCTATGAGGCCCTGGATGGAAAGAACCCCATCACAGCAGTGACCACCATGCCTGCTCCTCACTGTAGTGTGGTGTTTGGCAGTGCAGACTCTGTCCTCCGCTTCATCGACCCACGCAAACCTGGCCTGCAGCATGAGTTCCGGCTGGCGTACAACAACGTGAGTGCCGGTCTGATCCGCTACCTGGCCGTAAGCCCTGGAGGGCGCACCGTGGCTGCAGGCTTCTCCTCTGGTTTCATCGTGCTGCTAGATGCACGCACAGGCCTGGTGCTGAGAGGCTGGCCCGCTCACGAGGGAGACATCCTGCAGATTAAGGCTGCTGGGGGAAATCTGATCATCAGTTCGTCCACTGACCACACTCTGACCGTGTGGAAGGATCTGGAGCACAAGCCCCTCCACCAGTACAAGTGTCCCTCTGACCCGGTCCATGCCTTCGACCTGTACGGGGCAGAGATCGTTGCAGGAACCTTGGCCAACAAGATAGGGGTGTACTCCATGATGAACATCTCTGCCAGCCCGGCCAGCAGCACCAAGCTTAGCTCAGAGAACTTCCGTGGGACCCTCACCAGCCTGGCTGTGCTGCCCACCAAGAGGCTCCTGCTGCTGGGTTCAGAGAACGGGGCCATCAGGCTGCTAGCTTAGGGCTAACACATAACGCACTGGCTCAGCTAGCTATAGATTCTGCTGTTGACGTTTGCTGAAGGTGTCCTATTCCTAAAGCCTTTTACCTGTATCCTGAGCCTCTCAGCTCCTCCCTGTGTGGGATCGAGGCTAGACCCCCACTGATGCAAGTGGTGGGGTCCTCAAAACATCCTTTTacaagggtgagggagagaggagcaccaAGAGTAGTTATGAGCCTCTAACTGAGAGCACTTTGCTTGTCTTCTCTGCTGTAGTCAACGACCAAAATAAAGATGAAGTGTTATGTCACTGTCGAGGATAGATCTACCGTACGGGGCAACGAAACACTTGATTATGACCATCTATAGATCTTATATTATGAAGAAGATTCTTATCTGTGACTAGGTCAATATTCTGTTCAAAAGAATGGATCTGAGGAACTGCTCAGGAAGGTGGAGCCTAAAATGACTCGGATGTAGTGTTTGCCCTTTCCAAATAGATGCATACCTACCAACCAAAAAGACTGACATTTCACACACCCAAACATACCATCATTCTCTCCCTGACATTAGATCGCACCAGATGCACTGAATAACTATGCAGTATTCgtagataaaataaataaaaatgtatgtatgttTGCCATGTCTTTCTAAAGCAGTAATGCTTTCTCTCACCTTTTATTTCATTTAGAAAAAAATGTAAACCTACACAAGACCTTTTCATTTGACAGTGTGCATTTTCTCCAGCTTAAGGCTTGACGAGCGGGACGGCGGTCACATTGTGATTCTTCAACCTGTTATTGCTGTGTGCCAAGGTCACATGGTCAAATCCTACTGCACAATAAGGAGCTCCATTATCAAGCTATTCTCATAGATCACATTTTAagattattattttacaatgaatCAGTGGTTTAATATTAGTGTTATTTCTTTTGAAAAAACCTAAACCATGTTTGCCGAAAGATTAAACTGTTGATAGAAATAATCAGTTTGTGTGATCTAGGCCTAATTAAAGAATGTTGACTTGATGTAATGTATCATGATGAAACCAACTCAGACATTAAGCAAGCGATGTGTTTGGACTCTTGTCCATAACATAGACTAATGAGCATAGCCAAGACACAATTTACTTTTATAATGTAATAAGTATGCCTTGTATGTAATCACAAATTGGCAGTGTAAGAAAAGAATGGCAAGAAAaagccattaaaaaaaaaaaaaattatttgtgATCGAAACTAACTCCTGATGTATTTTCAGTACTTAGGCGGAGGCATTTGTTATCTGACCGAATTTTGTATGTACCTTGTTATCCTGTTGCCAATGTTTTCACTCTTGTTCTTGGTCAACCTTCAAGACTCTGCTCACAAGGGTGTCTATGCTCTTCTTCACTTTTATGACGTGCATTACCATCCTTGACCTCAACACAGTCCTATGGTTGATTTTAGGAGAGAAAGGTCAACCTTGACTCATCCATTTGTTTAACAGGCCACAAGTGTCACCATGTTCCCACGAGGCTCGctcactcagattttttttattttatgtttccTGTGACTTTTCTAATAATAAAACATGTACTTTGTTTTCAAAAGGAATCAAGTACCACCTTGACGTTCAGAAAAAGGTCATACTAATGTCCATTACAACATTTTGATGAGAAGTACACAAAGTTCTTATTTTATTTAACAGGTTTAATAAAATATTACCTACACGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2184231 lncRNA downstream 20081 18773602 ~ 18775173 (-) True G1909845
TU2184311 lncRNA downstream 28492 18766454 ~ 18766762 (-) True G1909915
TU2184310 lncRNA downstream 28807 18766216 ~ 18766447 (-) True G1909914
TU2184305 lncRNA downstream 39768 18754988 ~ 18755486 (-) True G1909911
TU2184296 lncRNA downstream 54972 18740065 ~ 18740282 (-) True G1909902
TU2184325 lncRNA upstream 955 18814701 ~ 18815028 (-) True G1909927
TU2184329 lncRNA upstream 5507 18819253 ~ 18825843 (-) True G1909930
TU2184359 lncRNA upstream 60977 18874723 ~ 18874925 (-) True G1909960
TU2184370 lncRNA upstream 66941 18880687 ~ 18880959 (-) True G1909971
TU2184381 lncRNA upstream 73084 18886830 ~ 18887147 (-) True G1909982
XM_021582606.2 mRNA downstream 442 18789219 ~ 18794812 (-) True LOC110503941
XM_036962081.1 mRNA downstream 7327 18775915 ~ 18787927 (-) True slc13a5b
XM_021582599.2 mRNA downstream 7344 18775256 ~ 18787910 (-) False slc13a5b
XM_036961084.1 mRNA downstream 30558 18757346 ~ 18764696 (-) True slc47a3
XM_021582593.2 mRNA downstream 229123 18561930 ~ 18566131 (-) False LOC110503933
XM_021582607.2 mRNA upstream 157935 18971681 ~ 19185772 (-) False LOC110503944
XR_005039347.1 mRNA upstream 583608 19397354 ~ 19398144 (-) False LOC118944057
XR_005039330.1 mRNA upstream 684816 19498562 ~ 19501080 (-) False LOC118944022
XM_021582610.2 mRNA upstream 692432 19506178 ~ 19515249 (-) False LOC110503947
XM_021582612.2 mRNA upstream 692432 19506178 ~ 19515249 (-) False LOC110503947
TU2183897 other downstream 360462 18432024 ~ 18434792 (-) False LOC110503924
TU2183901 other downstream 360462 18432024 ~ 18434792 (-) True LOC110503924
TU2182802 other downstream 1516844 17277807 ~ 17278410 (-) True LOC118944080
TU2182093 other downstream 2634028 16158846 ~ 16161226 (-) True G1907951
TU2182062 other downstream 2662692 16131990 ~ 16132562 (-) True G1907922
TU2184703 other upstream 154316 18968062 ~ 18973230 (-) False LOC110503944
TU2184704 other upstream 154316 18968062 ~ 18973230 (-) True LOC110503944
TU2184852 other upstream 346703 19160449 ~ 19162158 (-) True G1910398
TU2185002 other upstream 519095 19332841 ~ 19333225 (-) True G1910539
TU2185117 other upstream 676971 19490717 ~ 19491608 (-) True G1910651

Expression Profile