RNA id: XM_021582610.2


Basic Information

Item Value
RNA id XM_021582610.2
length 3288
RNA type mRNA
GC content 0.54
exon number 2
gene id LOC110503947
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 19506178 ~ 19517866 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagagagagggagggagggaggacggacgGAGAGAGTAACAAGAAAGTCATAGCAATTAATAATAAAAAGTTTTGGCAGTCGTGCTTGGAAAACTGGCATGGTTTTTGGAGGCTGGCAGTTCAAAGTTGAAACGTCAGAAATTACTCCAAAAGACTGCTGAGATGATCATTAAGGGAGACTTAGATCGGGTGGCAGAAGAGATCGGGCATCCAGGTGGCGGTCTGACGACGATGCTCCATGCCATGGAAGTCCCAAGTCATGCTAGACACCTCCTCCTGCAACTCAACACCCAGCGCACCAAGGGCTTCCTGTGTGATGTCATCATCGTGGTGCAGAACGCGTTGTTCCGAGCCCATAAGAATATTCTGGCCGCCAGCAGCCTCTACCTGAAGTCCCTGGTCGTCCATGACAACCTCATCAACCTAGACCACGAGATGGTGAGTCCCGGGGTGTTCCGGGTCATTCTAGACTACATCTACACGGGCCGTCTGACGGAGGGAGACCCCAGCTCCCCAACAGAGCCCAACCTGGGGGCCGTGCTGGCTGCAGCTAGCTATCTGCAGCTGCTGGACTTAGTGGCACTGTGTAAGAAGAAGATGAGGAGAAATGGGAAGTACCATCTCCGCCCCACTCCTGCCTTTCTGCCCTATGGGAAGATGGGCCCCAATAGTTTGGGTTTAGGGGGAGGGGGCAGGTATCGGGTGTCCACCCCTGTTATTCAGTCCTGCTACCCAGGGGGAGTTGTGAACACCCACACGCCCCGCGCCCCACCACTAGAGGAGCTGCCACCCCACCCCCATGCCACCCATGCAGGGGAGTTGTATGCCCCCACCTCCTCTCAGGGCCCTCAGGTGTTCCCCTCCACACCCTCAGCCCTGCCTGCCCAGCCCAGCCTGCGCCCAGTTCACTCTGACAGGAACTGCTCCCCCATCTATGTCCTGGACCTCTCCAAGGAGAGCCCCAACTCCCAGTCCCAGAACACTCCCTCCCACCCCCACCTGGCCCACGCCCTGCCCCACCACGATGAGGAGCGGGAGGGGGGGCTGAGTGGCCGCACCAGCCCAATGCCGGGGAACAATGGCGGGGCCTACCCCACAGAGAAGATGGAGACAGCTGATCAGGCTGGGTCTCTCCCACCTCATTCTTACCCCCACCTTAATAAGCCCCTGGGGCCCCACCTGCCCCACCTCCACCGCTCCAGCTCCCAAGGTCCAGACCACTACCCCTGCCCCCTCAGCCCCGACACCCCCACAGAGGCTGGAGAGCCCAGCAGGGAGATGGGCAACATCTACCGCTGGGTGAAGCATGAGCCACTGTCATACACAGCTGAGGATGAAGAGGATGACGAGGATGAGGAGGAACGGGGTGGAAACGGAGACCAAAACCACCAGCATCACAACCACCATCACAAAGCAGGGGAGGAGAGCGATGATCGCTACCGTAGGGTGGGCtgtgatggggaggaggagaagagtggCTCAGGCAGTGAGGGGACAGGCAGTAGTGAGGGTCGACCATCACCCACAAGGGTCATGGGGAGGTTCCACCTACCCTACGAGCCTGAGAGCTTTGGGGACAACCTGTACGTCTGCATCCCCTGTGACAAGGGCTTCCCCAGCTCTGAGCAGCTCAACGCCCACGTGGAGACCCACACAGAGGAGGAGCTGTACTCTGGAGGGGAGATGGGCAGCAGCAACCCCAaaaacaacagtagcaacagcaaTGGTAACGGCAGCCTGAACAGCCTGGAGGGGAAGTCCAGCCAGAGCCTGACGCCTGGGGTCCTGGGGGAGATCATCAGACCCTATCGCTGTAACTCCTGTGAGAAGTCCTACAAGGACCCGGCCACGCTGCGCCAGCACGAGAAGACCCACTGGCTCACAAGGCCCTACCCCTGCAGCATCTGTGGCAAGAAGTTCACCCAGCGCGGCACCATGACCCGCCACATGCGCAGCCACCTGGGACTCAAGCCCTTTGCATGCGACCACTGTGGCATGCGCTTCACCCGCCAGTACCGCCTCACAGAGCACATGCGCATCCACTCCGGGGAGAAGCCCTATGAGTGTCAGGTGTGCGGGGGCAAGTTCGCCCAGCAGCGCAACCTCATCAGCCACATGAAGATGCACAGCAGTGGGGGGGGCGGAGGGGCTCTGACGGCCGACGGAAAGCTGAAGCTGGACTTTTCGGAGGGGATCTACCCACTGAGTAAATACGCAGCAGAGCACCTGGGGCTGAAGCAGGAGAAGGCCTCTGAGCTGCTGGCAGAGCATGCCATGGAGAGCCTGTTCCCGTTGTCCAAACTGGCAGGCGAACACCTGCGCCTCAGCCACCATGACAAGATGGATGTCCTGGGGGTCCAGGCCCTGCCCCCTCCCCCAGGGTCCCTCTCTGACTTTCACTCTCGTACCATTGAACGCTACTCCCCCAGCTAAAACCCTCTGACCAGTCACCCCCAGCAAGGCCTTGGCTACCACACAATCCTGTGGGCACACAACTTAACTTACAGTATTCTAATGTCATTCACTTCAACTCCATCAGTATCTGCACCTCAGACTAAGGCCAATACTTGGCCTAAAGAATGCCCACAAACTGTGTAGACTCTTATAAGTGCCTTTCTTTCCTAAGTTTGCATTATATGCATTTTAAAGACCTTCCTAGAATGAGAAACGTGCTatttctattatattttgaccAAGGAATACCCACTCAAAACAGTGTAGTAGTTATGTATACGCAAACCACCGATCCAAAAACAAATTGAGAACCAAAGAtcattttttctttgttttttgtaCATAATGAAAAACCAAAGAAACTGTTGCCAGAAAGTGTTGTAATCTGACCCTACACCTGTGTACTAAATGTACTTTTGTACTACTACTATTGTAATTGTACATAAAATGGGAAAAAAAGCACATATGGACAAGATTCAGGGCTCCTGTCCAGAACTGAAAGGACTGTTGGACAAAAGAAAAAGCCAAAGCTTTGGGATTTGCAATTGATTGGAACACTTTTTCTTAATTTTGTTTTTTGGGGTACTGGatttttctctctatctctctatccagtTTTACGCCATGCTCCAGCTGTTCTAGTCACGAGGGAGGGACTAACTGAAAACAGCCTTCGCTCCACAATTTAGGTAAAGTTATCTGTGCTTTGTTTTTCTACCGTTGTTATGTACTCTGATCATGATGTTGTGTACAGAGAGACTGATATTAAGTGACAGTAATAGTAGCTTAATGACTTGTACACTCAGTGCCATAACCCTTTGAACCCATAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2185416 lncRNA downstream 3714 19498786 ~ 19502464 (-) True LOC118944022
TU2185417 lncRNA downstream 4876 19498753 ~ 19501302 (-) False LOC118944022
TU2185118 lncRNA downstream 14181 19491770 ~ 19491997 (-) True G1910652
TU2185098 lncRNA downstream 29680 19476241 ~ 19476498 (-) True G1910633
TU2185095 lncRNA downstream 31595 19474289 ~ 19474583 (-) True G1910630
TU2185463 lncRNA upstream 55612 19570861 ~ 19576495 (-) True G1910931
TU2185477 lncRNA upstream 93417 19608666 ~ 19610426 (-) True G1910942
TU2185486 lncRNA upstream 101920 19617169 ~ 19617575 (-) True G1910950
TU2185487 lncRNA upstream 102414 19617663 ~ 19617916 (-) True G1910951
TU2185488 lncRNA upstream 102784 19618033 ~ 19618262 (-) True G1910952
XR_005039330.1 mRNA downstream 5098 19498562 ~ 19501080 (-) False LOC118944022
XR_005039347.1 mRNA downstream 108034 19397354 ~ 19398144 (-) False LOC118944057
XM_021582607.2 mRNA downstream 320406 18971681 ~ 19185772 (-) False LOC110503944
XM_021582600.2 mRNA downstream 692378 18795254 ~ 18813800 (-) True wdr81
XM_021582601.2 mRNA downstream 692432 18795254 ~ 18813746 (-) False wdr81
XM_021582613.2 mRNA upstream 10647 19525896 ~ 19542981 (-) True tsr1
XM_036961676.1 mRNA upstream 71661 19586910 ~ 19589097 (-) True gmfg
XM_021582620.2 mRNA upstream 345590 19860839 ~ 19864025 (-) True nkapd1
XM_021582626.2 mRNA upstream 378841 19894090 ~ 19896893 (-) True pih1d2
XM_021582621.2 mRNA upstream 381755 19897004 ~ 19904770 (-) True LOC110503955
TU2185117 other downstream 14570 19490717 ~ 19491608 (-) True G1910651
TU2185002 other downstream 172953 19332841 ~ 19333225 (-) True G1910539
TU2184852 other downstream 344020 19160449 ~ 19162158 (-) True G1910398
TU2184703 other downstream 532948 18968062 ~ 18973230 (-) False LOC110503944
TU2185535 other upstream 175817 19691066 ~ 19691513 (-) True G1910996
TU2186472 other upstream 945419 20460668 ~ 20461437 (-) True G1911862
TU2187184 other upstream 1457430 20972679 ~ 20976236 (-) True G1912470
TU2188551 other upstream 2348339 21863588 ~ 21864274 (-) True G1913665
TU2188549 other upstream 2356004 21871253 ~ 21872149 (-) True G1913663

Expression Profile