RNA id: XM_021582613.2


Basic Information

Item Value
RNA id XM_021582613.2
length 2673
RNA type mRNA
GC content 0.56
exon number 15
gene id tsr1
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 19525896 ~ 19542981 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATGCGGAAGTGGACTACGTCATCAAAGTTGGCAGGCTGTCGCACGCTCGTGGCGAAAATGGTGTCTGGTGCAGAACAACAACAGGGCCATCGAGCTGGGGtttataaacaaaaaaacaaaggacATAAACATGGAAAGCATCGGACGAAAGGAGAAATCGAACGGGAGAACAAGGGTAGAGTGTCGGTGACGGCTCTTACCAAGAAACAGAGGAAAGAGGCGAGAAAGATGGACAAAAGGCACAAAGCCAACCAGCTGCGGCGAAATAAGAAGGACCTGGTCCTGACAGAGAAGCGTCGTCTGGGCAGCAGGGATGGTCCACCCCATCTGGTGGCTGTGGTCGCCCTCCATGCAGGTGTGGATGCTGAGGCTGTGACCAGGTTGCTGCGGTGTGAGGGGGCTGGCGGGCTGGTGCGTGAGGAGAACAGTGTGTGTGGGGTTAGTGACAGCTTTGGCCTGGTCATGCCCCGCTTCaaacagaggttcaccttcctcCGCCCAGACACAGcTGACATGCACTCTCTACTGGACGTGGTGAAGGTAGCAGACAGTCTGGTGTTTGTGCTGGACTCTACAGAAGGCTGGGACAGCTATGGAGACCACTGCCTCTCCTGTCTCTTTTCACAGGGGCTACCAGCCCATGCTCTGGTGTGTCAGGGTGTTTCAGATCTGGCAGTGAAGAAGCGTGTGGACTCACGGCGGGCACTGGCCAAGATATCTGAAATCCGCTTCCCTGGGGCGCGCCTCTTCCCCCTGGACTCAGACCAGGACGCCACACTGATGCTAAGACACCTGGGAGCACAGAGGCAGAGGAGGCTGGGCTTCCGCTCCCGTCGGCCTCACCTCCTGGCCCAGCAGGTCTCCTACACCCCCAACAGCTCTGAGGGGAGTGGGGGAGCCCCCACGGGCCTAGGGACCCTGCGTGTGTCTGGGTATGTCCGAGGCTGCCCTCTGCAGGTGGACAGGCTGGTGCACATCTCTGGATTTGGAGACTTCCTGCTCAGTCAGATCGATGCTCCCATAGACCCCCTTCCCCTCAACTCTATGACCTCTCGCCCTGCCAAGCAAGGGAAGGAAGGAGATGTAGACATGCAGGATGGTGGTGTTGAGGTGGCGTCAGTGCGGGTGCTGATGAAGGCAGACCCAGCTCGCAGGGAGAGTCTGCAGGCCGAGGCAGAGGTAGACCCCATGGATGGAGAGCAGACCTGGCCCACTGATACTGAACTGCTGGAGGCTgaagAGGCCAGAAAGAGCAAGCGTGTAATGAAGGTGCCCAAAGGGACATCAGACTACCAGGCCACGTGGATTGTggatgaggaggatgagaatggcgaggaggatgaagagagtactgacgatgaggaggatgaggatttGGTGATGGAGGAGTCCATAGATGGAGAGGACCTTGACTCTCAGGTGGATGCTGCCTCAGGTGGTGGctctgatgaggaggaggaggaggaggaggagctgaatTCCACATCGGATAAGGGTGGAGCAGACCAGCGCTATGATGAGCACATGGACGAGgcggaggaaggggaggggttaaAACGATACCGGGAGGCTCGGGCCAATGAGATGTTCCCAGATGAAGTGGACACCCCTCTAGACCAATCGGCTAAGAACAGGTTCCAGCGTTACAGGGGCCTGAAGAGTTTCCGCTCCTCCCCCTGGGACCCCTTGGAGAACCTGCCTGCAGACTACTCCCGCATCTTCCAGTTTCAGAGCTTTGAGCGCACACGCCGCCGCGTACTAGCTGAGGCTGCGCAGGAGGAAGAGGGGGCCATGGTGGGCTGGTATGTGACCCTCCATGTAGTGGATGTTCCCCCCACGGTGATGGAGAGTGTCCAGGCAGGCAGGCCTCTGGTGCTGGTCTCCTTACTGCCACATGAACAGAAGATGTCAGTGATGCACATGCTGGTGAGGAGACACCCCAGCAACACAGACCCTATCAAGTCTAAAGAGGAGCTGGTGTTCCACTGTGGATTCAGGAGGTTCAGGGCCTGCCCCATCTTCTCCCAGCACACATCAGCCGACAAGCACAAGCTGGAGCGTTTCCTTCAGGCTGACGCCCCCACAGTGGTTTCTGTGTACGCCCCCATCACATTCCCCACCGCTGGGGTACTGCTTTTCAAACAGAGGGAGGATGGCATGCAGGACCTGGTGGGGACAGGAAGTCTGCTGAGCTGTGACCCCCAGCGTGTGGTGCTGAAGAGGATCGTGTTGAGTGGCCACCCCTTCAAGATCAACCGCCGGTCCGCTGTCTGTAGATACATGTTCTTCAACAGGGACGACATCCTGTGGTTTAAGCCTGTTGAGCTGAGAACCAAGTGGGGCCGGAGAGGACACATCAAGGAGGCCCTAGGTACTCATGGACACATGAAGTGTGTATTTGACAGCCAAATGCGGTCTCAGGATACTGTCATGATGAACCTGTATAAGAGGGTCTATCCTCGCTGGACATATGACCCCTATGTGCCTTTGCCCCTGCCCTGGGTCAAGGGGGAAGGGACTCAGGTGCCGGATGATTTTGACATGGAGTAGGTGGTGGTCTGTTGCAAGAGGTGTGTTGGAGTCTGTAGAGAGTTGCATGGACTGTGGTGATTACATTTTCACTCCAATAGATGGATTGTAATGTGTATTAAATAAAACCAATGAGACCAAA

Function

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K14799 TSR1; pre-rRNA-processing protein TSR1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2185416 lncRNA downstream 23432 19498786 ~ 19502464 (-) True LOC118944022
TU2185417 lncRNA downstream 24594 19498753 ~ 19501302 (-) False LOC118944022
TU2185118 lncRNA downstream 33899 19491770 ~ 19491997 (-) True G1910652
TU2185098 lncRNA downstream 49398 19476241 ~ 19476498 (-) True G1910633
TU2185095 lncRNA downstream 51313 19474289 ~ 19474583 (-) True G1910630
TU2185463 lncRNA upstream 27880 19570861 ~ 19576495 (-) True G1910931
TU2185477 lncRNA upstream 65685 19608666 ~ 19610426 (-) True G1910942
TU2185486 lncRNA upstream 74188 19617169 ~ 19617575 (-) True G1910950
TU2185487 lncRNA upstream 74682 19617663 ~ 19617916 (-) True G1910951
TU2185488 lncRNA upstream 75052 19618033 ~ 19618262 (-) True G1910952
XM_021582611.2 mRNA downstream 8030 19506178 ~ 19517866 (-) False LOC110503947
XM_036961809.1 mRNA downstream 8030 19506178 ~ 19517866 (-) True LOC110503947
XM_021582610.2 mRNA downstream 10647 19506178 ~ 19515249 (-) False LOC110503947
XM_021582612.2 mRNA downstream 10647 19506178 ~ 19515249 (-) False LOC110503947
XR_005039330.1 mRNA downstream 24816 19498562 ~ 19501080 (-) False LOC118944022
XM_036961676.1 mRNA upstream 43929 19586910 ~ 19589097 (-) True gmfg
XM_021582620.2 mRNA upstream 317858 19860839 ~ 19864025 (-) True nkapd1
XM_021582626.2 mRNA upstream 351109 19894090 ~ 19896893 (-) True pih1d2
XM_021582621.2 mRNA upstream 354023 19897004 ~ 19904770 (-) True LOC110503955
XR_005039372.1 mRNA upstream 364178 19907159 ~ 19909801 (-) True LOC118944068
TU2185117 other downstream 34288 19490717 ~ 19491608 (-) True G1910651
TU2185002 other downstream 192671 19332841 ~ 19333225 (-) True G1910539
TU2184852 other downstream 363738 19160449 ~ 19162158 (-) True G1910398
TU2184703 other downstream 552666 18968062 ~ 18973230 (-) False LOC110503944
TU2185535 other upstream 148085 19691066 ~ 19691513 (-) True G1910996
TU2186472 other upstream 917687 20460668 ~ 20461437 (-) True G1911862
TU2187184 other upstream 1429698 20972679 ~ 20976236 (-) True G1912470
TU2188551 other upstream 2320607 21863588 ~ 21864274 (-) True G1913665
TU2188549 other upstream 2328272 21871253 ~ 21872149 (-) True G1913663

Expression Profile