RNA id: XM_036962161.1


Basic Information

Item Value
RNA id XM_036962161.1
length 2226
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC110503990
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 21112071 ~ 21117277 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCCAGCTGGTCACCTGAGGAGGTCCATGCGTTGTTAAGACTCTGGGCAGATGGGAGTGTTCAGGAGCAGCTTCTCTCATCAGTGAGAAACAAGAGTCTTCACCAAACTTAGTTCCGAGCTCGCTGCCCTCGGATCTACGAAGACATCTAAACAGtgcagagagaaaataaaaaagcTGAAACAGGAATACAAAAAAATCAAGAATGACACTAGCAAAAATAGTTCCAATATTCGTGGAACAAGATGGTTTGCCATCATGGATGCTGTTCTCAGTCAGCGAACAAGAACTTCAATGCTTTTGGAGTCGACTCCGCTTAAGTCCTTGCCCGAGGCAGAACACTCTGGTTCCCGTTTAACTCTCTCCTCCCTACGTCTCCTTGCTCCACCATTACGCCTGATGTCAGCATTCCTGTGGCAAGTGGCTCAGCAGCATACTGTAAAGCATTTTGGGAAACTGGAAGAGTTTGTGACTTTGGTGACAGAGGTGGTTCCAGAGCTGCTGAGTTCCAGGCAGAGGACCCAACTCCTCCTGGGTCTGAGAGCAACGCTGGTTCTAGAGTTATGTCGTAATGAATGCACAGCTGACCTCGTGACCATCCAGCCTCACCTGGATAAAATCCATTCTTTGACAGAATTCTCTGTACACAAAGAGAGTAATGATGATGAGTTGAAGGCTACATTGTCTAATTTTGTGGAATTGGTCCAAACCCTGCTGGAAGACCCTTCTGAGAGGGAGCACTTCTTTCAGGTGGTGTTCCCAATACACTACGGCCCTCGGTATGACACAGCACTGCGGGTACTGGTGTGGGAGTTCCTCTCCAGACTGGAGGAGCTGCTACCTGTACCAGACTTCACACAGACGGCAGCATGGCTTGGTGCAGGCCCCTCTGTCTTGGAGGAATGTGGACATGCCATATTTGACACTGAAGAGCTGAAGACACTTCTGCAGCACCATCAGCATCATGGAAACCTGAAAAAGAGTTATTTATCTTATTACACTGCAGATACCATCCTATCcacactgtccctccctccaacAATAAGAGTTGTCATTGGCTCTGAGCAGCCCAGCTCTGACAAaacgagagatggagaagagCGAGAAGGACAACCTaatggggacagagaggaggaggaaatggaagagagacagaatgaaGAGAACTGGGAAGATGAAGATTGCAATGAAATAAGTTATATAAGGCAGGATTTGGAGCAACAGGAGCAGATGGGCATTTCAACGGCAGAGACGTCTGCTCTGTGTATCCCAATGCCCAATAACGGATTTAATGATGAAATGTCATCCCGCATCCTTGCCTGCTCCCTATGCCCATTCAATCACATTGAAATTGCAAAACTCCACCAGCACATCAGGATTAGGCATCGAGGAGAGGACCGGAAGCTTTTATGTTCTAAGGAATCTGGGACTGATCACCCCTTTCCCTCAAGCAGCACTAAAATAATCCCCTATGCACCAATAATCAAGACTCACAAATGCACTCATTGTGGTAAAGTTTTCAAATGCTCCAAAACCCTGAAAGTACATATAGGAATTCACACATTGCCATTCCATTGTAACCAGTGCGAGAAAAGATTTTCTTCCAGGTGTGGTCTGAAAAAACATCAGCGAGTTCACACAGGGGAAAGACCATTCAAATGCTCTCACTGTGACCGAAAATTCATGTGTGCAGGTTCACTCAAATggcatgtgcgcacacacactggGGAGCGTCCCTACTGTTGCACTATTTGTGGGAAAACATCTGTCCAACATCTAGCAAGACACATGCGGATGCATGCAGGGGAGAAAAACTATTTATGTAGCATCTGTGGTAAGGCATTCCTTAGCTCAGGAGAACTGAGGTTGCATACACGATCACACACAGGAGAATGTCCCTACACCTGTAAACATTGTGGAAAGGGCTTCAAAGCATCATGCCATCTAACACTTCATATGCGATCTCACACAGGAGAGCGTCCATACCCCTGCACCCTGTGCACAAAACGTTTTACTACGGCAAGAGGCCTTAAAAGACACACGCTTACTCACACTGGCGAAAAACCTCACCAGTGCTACAagtgtgggaagagattttcTGTAAGGGGAAATCTGAATACACATCTTAAAAGTCATAGATTTTAGGATGGGATTCTGCAGGAGCAGTCTCATAGAATTGACTTTAATTAAAATATAAACAATTTCATTAAATACTGAACAAGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2188058 lncRNA downstream 26012 21085825 ~ 21086059 (-) True G1913254
TU2187222 lncRNA downstream 45730 21066030 ~ 21066341 (-) True G1912496
TU2187208 lncRNA downstream 104430 21007167 ~ 21007641 (-) True G1912483
TU2187183 lncRNA downstream 141513 20968447 ~ 20970558 (-) True G1912469
TU2187168 lncRNA downstream 161854 20948535 ~ 20950217 (-) True G1912454
TU2188123 lncRNA upstream 54366 21171643 ~ 21175302 (-) False G1913296
TU2188128 lncRNA upstream 55655 21172932 ~ 21173561 (-) False G1913296
TU2188130 lncRNA upstream 55655 21172932 ~ 21175302 (-) True G1913296
TU2188231 lncRNA upstream 228023 21345300 ~ 21345641 (-) True G1913393
TU2188254 lncRNA upstream 271926 21389203 ~ 21389481 (-) True G1913410
XM_021582707.2 mRNA downstream 767 21088735 ~ 21111304 (-) True LOC110503992
XM_021582708.2 mRNA downstream 768 21088735 ~ 21111303 (-) False LOC110503992
XM_036962162.1 mRNA downstream 953 21088735 ~ 21111118 (-) False LOC110503992
XM_021582705.2 mRNA downstream 30907 21067646 ~ 21081164 (-) True LOC110503989
XM_036961321.1 mRNA downstream 47694 21029784 ~ 21064377 (-) False LOC110503988
XM_036962163.1 mRNA upstream 6101 21123378 ~ 21126584 (-) True LOC118944112
XM_021582709.2 mRNA upstream 22239 21139516 ~ 21151666 (-) False LOC110503993
XM_021582710.2 mRNA upstream 22239 21139516 ~ 21151666 (-) False LOC110503993
XM_036961224.1 mRNA upstream 22239 21139516 ~ 21151670 (-) False LOC110503993
XM_021582711.2 mRNA upstream 22239 21139516 ~ 21151675 (-) True LOC110503993
TU2187184 other downstream 135835 20972679 ~ 20976236 (-) True G1912470
TU2186472 other downstream 650634 20460668 ~ 20461437 (-) True G1911862
TU2185535 other downstream 1420558 19691066 ~ 19691513 (-) True G1910996
TU2185117 other downstream 1620463 19490717 ~ 19491608 (-) True G1910651
TU2185002 other downstream 1778846 19332841 ~ 19333225 (-) True G1910539
TU2188551 other upstream 746311 21863588 ~ 21864274 (-) True G1913665
TU2188549 other upstream 753976 21871253 ~ 21872149 (-) True G1913663
TU2190851 other upstream 2634566 23751843 ~ 23752463 (-) True G1915836
TU2193838 other upstream 5046188 26163465 ~ 26165245 (-) True LOC110504083
TU2193901 other upstream 5093139 26210416 ~ 26211871 (-) True LOC110503381

Expression Profile