RNA id: XM_021582711.2


Basic Information

Item Value
RNA id XM_021582711.2
length 4908
RNA type mRNA
GC content 0.50
exon number 17
gene id LOC110503993
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 21139516 ~ 21151675 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGAAATTCCGGGTTACGTGTGCTCGAGTTCCCCGCCTTTTCACAACTCGTAGGACGTTGCTTACGCAACTCACTGGATGTTTTGACAAATGATACCTGCAACAAGAGGGACTGTGTAATACAAGCCAGGCATTCATTCGCGAAAGCCCCAATTTGAAGGAGTACGCAGAACACAGCTCAGATGATGGAACTATTCCTGCTTGTGTGTTTTCCCTCTTCGGGAAAAACCTGACAACCATTTTGAATGAATATGTTGCTGTCAAAGCTAAAGAGACCAGTGAAGAGACTCAGATACCTGTCATGATGACATCATTGTGGAAAAAGCTTGATTTCACACTCAATCAAATAAAGTCTATGCAGAACTCCCCAGCTGTTAGCCAGAATCAAAGACTCCGCACACGTAATGGAATCGTGAACATGAGGGGGCGACAGAAAGCCTTGTCATCAACCCAGTCCCCCAGCTCTGCGTTTCTGTCATCGTCAGCCCCTCTGTTGGCCCAGGGCTTTTCCAGCCCCCTCGATACCCCTCAGAGCATCTTGGGACACTCAACCCCAGTCTGCTACAGCTCCCAGCTGACCAGACCCTCCCCCATCTGCAGCACATCGCCCCAGATCCAAGATGGAGGACGTCTACTCATCAATGTGAACCgAGAGTCACCTTTGCAAATAATGGTTCCAGACAACCGGTTAACACCAGGACCATTATCCCCAGGGCGTCGGAAATGTGACTCCCccaggaggagaggtgggggctTCAGTGGATCTGGTGGGACTGGAAGAACCAACATGGCGGCCAGTAGCCTGACAGCTGAGCCCCAGAGTGAAGAGACAGTCACAGAGAATTTCCCTCAAATGGTGATACAAAATGCAAGAGAGAGGATTCTAAATGACAAGTCCTTACAAGAGAAGCTTGCTGAAAACATCAACAAAATCCTAGCAAGTGATGGCAGTCCACAGGCTTTAAAGGCATCATGCAGCACCATGGAGCCTGACCAGTCCATAGATGAAATTCTGGGCCTGCAGGGGGAAATCCATATGTCTAATGATGTTATACAAGACATCTTGGAGCAGACAGAGTCCGACCCAGCCTTCCAGGctctctttgacctctttgattACGGCAAAAGCAAAACCAGTGAGGATACTGAACAAGGAGCTGGGAATGTGAGCAATACCACCACAGAGAATGGTGAGACTGAGACTAGATGTATTGATGGCTCTCCTGAGACTGGAGATTCAGGCACTGGGCCTGAAAATTCGACACAAGGgcaagaaacaacaactagagcgACAAAGTCCAGTCAAGAGCCCAAGAGTAAGAAAACAAGGAAATCTGCACTTCATGTTTCAAGCACTTCAAATGCAACTCCTGGACCCAGTACCAGAGGGTCGAGAAGGGGAGCTAGCTCAACAACTCCTGGACCCAGTACCAGAGGGTCGAGAAAGGGAGCTAGCTCAACAACTCCTGGACCCAGTACCAGAGGGTCGAGAAAGGGAGCTAGCTCAACAACTCCTGGACCCAGTACCAGAGGGTCAAGAAGGGGAGCTAGCTCAACTGAACCGTCAGCACATATCGATAAACTTACTGTTGCTGCCTTTTCTGCCGCCAAGGACTCTGATACTGTTGACTCCGGCTCCATCTTTGATCAGGATGAATCAGGCGTGGATATAGATGAGCCTCTGAATACTCCTCCCCTTCACAATATAGCTCTCCCAGATCTCTTTGAGCCAGTCAGACAGGAGAGTGGAACAAATAATCCGGTGTCAGCATGCAATGCAGCTTCATCTGAAACCAGTATGGTCTCTGCTGTCAAAAACATATTGGGCAATGAGAACCCCGCGGGGGTTGATGATGGGCAAGTGATGGATAACCAAGCATCACTTCTTAACTCTTCACCTGGCCTGTCTAATTCCATGCCAGCGCTGGCTCAGTCAAACAAGGCTCCCATAGAGGcctctaacctgtctcacagGAATATGACCCCACCCAGCAGTGTAGAAATTTCCCAACCTCTACCACAGACCATACCCTCTATGCCTGTCCCATCAACAATTAAAACATCAACCACTCCTGCTGCCCCAACCTTCATCCCAAACTCCAACCCCACAGGCAAGGAAGTTGACCCCAGTAAGATTGTAGCCCTGAAGATCATCATCAGTGATGAGCAAGGGGAGCCCTCCTGTGACTCAGCCCTGAACCAGGCTGTGTCCAGCATCACTGGGGACAGGATCCCcaccatcttcctctcctcccccaccaaGTCACCTGCTAAGGCCTCGGCCCTCAGTGGCGCCCCCATGGCTCAGGAGGAGACGGTGCAGGcggtgaccagtttacagaggacaGAAGTCCTCCAGCCAGCAGAGACTCCTCTTAGTGAGAAAGCAGGGGAGGTGGCAGCATTGGCAGGGACGTCATCTGCGTTGACACAACCAGGCTACTACATTCAGCTGCCCTTTGATTCAGCCACATCCACCAACAGCTACATCTTAGTGACAGACACAACAGCCACAAACCACCAATCCAACAAGGTGATGTTACCCAGTGGCGCCCCACAGGTACCGACAGTACCCCCAACCTCATATGCTCTGGCCACTCCACCCCGCTATTCCCCTGGATCTAGACTCATTATATCTTCACCAGTTCAGCCCATGCTGCAACACATGGTGGTTCCTGTATCTGTTGTTGGGCAGAATAATGCAGGACAGTTCTCAATAGTTCCTAATCAGTTGATAGCCATGCCTAGCCCTGTTTCAGCAAAGCAGCCAGCAGCAGTGAAAACCAAGCCTAAACTGGCACCCAAGGACACCACAGTCTCAGACAAAATGGGAGCTTCTGGATCAAATATGATTACAAAGCAGGTTCAGGGGCAATCCTCTGAAAGCACAGGGCAGCAGAAGGTAGCAGTTGGCTTGAGCCCCAGCCATAGGAGGATGCTTTGCTTTGATGGGTCTTCTAGTAAAACTGCCACTCAGACCAGAAAAACTGCTTTCTCCTCCAAAGCAACACCTACTCCTGTATTGCCTTCTGTCCAACAGTTGGATAAAGAGAGAACTAAATTGGCCTCAGCAAATTCTGCTATCTTGGGTAGCAGCAGGCCAAAAAGGAGAATAGAGACTGTAAGATGCAcagacaacactcagacatcatggACCGGAACAGAGACCGAGAAATCCTCCACTGACCAAAATCAGAAAGAAGCTGTGAAAAAGACCCCTTCAAAGAGGGACGCAGATCAAAATGCTAGAGATCAAACTGCAAGTTCCAGTAGATTTCAGAGTGCTGGTATCAGTAAGACTGATGCCTCACAGTCAGAGTCCAGAAAGAGATCACAATCAGCAGACCAGAAGGATGATGCTGGAACAGAATCTAAGGATGCCCAGAGCTCCAGGTCTTCTTCCTCTGATCACAGACTGAGATCAGGGAGCAGGAAAGAAAAGGAGGACACAAGTAGACAAGAGTCTACTGAAAAATCTCCTGCCAAGGAGTGGGAGGGACGGACCGAGAAAATGACATCTTCTCAGGACCCCCCTCATGTCACTGCCAATAAGGAGAATGAGCTGGAGGGAGGCAGGCGAGAGCAGCAGCCCACACCAGCACCAAGAGAGTTCAGCCAGGCCCCAGTGGGCTCACAAACCCCTGTCCCCCAGGCTAGCTCCAGCAAAATCCCCTCCAAGACCAGCCCGCTGACCAAGCAGGCGGCCGAAATGCTCCACGACATCCAGGGTCTaaaccctccctccaccccttctaAGAGGCCAGGCATGGGCTGTCCAGACCTGCCTCTTCCTCTGACCCCTGGCCGTCTCCAGGAAACTCTAGACTGCCCCATGACCCCTGCACGTCAGAGGCTAGGCAGGGATGGAGAGGGCACCCCCAGGCCCCTGGTCCCTCCCGCCACCCCGGACCTTCCCTCCTGCAGCCCAGCCAGTGAGGCAGGGAGTGAAAACAGCATCAACATGGCGGCCCACACACTGATGATCCTATCCCGAGCTGCCATCGCCAGGACAGGCACCCCACTGAAAGACAGTTTGCGCCAGGAGGGGACTGGAACAGTGGCCACTGTAGCTGCCAAGAGCAAGAAGCGCAAGCAGCCCGAGCCCCTGGCCAGCCTGCCAGCAAAGAAAGATCTTTCCAGTTCATCTGGTAGTAAGAAGAAGGCAGAGAAACAACGGAAACTAATGGATTCCTTCCCTGATGACTTGGATGTGGATAAGTTCCTGTCTTCACTGCATTATGATGAGTGATGGGTTGAGTTATAGCAGTTTGAGTGAGATGGGAATCTCCAAACACTACCTACCTATTCTCCAGGAATAGAACAAGCCATGATTTAGTATCACGGTGCCTATGTTTAACCCATCATGCCTTTTAGGAGTTAGGCATCTGTGGTCTAGTGGAGCATGTCCTCAGATTAGATTTTTTCTTTGTACTGTCTGCTTGTAGGGTGTGTCCTATACCCTTGGACCTAACTAATTATACATGTGATGTATGAACTGTATAGTAATTATTGTAGAAATGCTAGATAGAGAGCACTTTGATTCCATGCAAGGACTGTAATGTTAAGAATGGTTTCCCAATCTGGTATCAATAATTAAGAAAACAACCCTTTCCTTGGTCAATGTTTGACTGTGTCTAACTTTTAAATGATCCATCTTGTACACTatggcagcccaattctgatctttattTCACTAATGGGTCTTttcaccaatcacatcagatcttttcataTTGGCCCTTTTTCAGAGCTGGTCTGATGGGTCAAAAGACCAattcgtgggggggggggggggggggaatcagaaTTGGGCTGAATGTGTAGATGCAGActtggtgttgtgtgtgtgtgtgtaaagtatgTTTCCTTCACTAGTGATTTTATATTAAACTTAAATTAAGAATCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2188058 lncRNA downstream 53457 21085825 ~ 21086059 (-) True G1913254
TU2187222 lncRNA downstream 73175 21066030 ~ 21066341 (-) True G1912496
TU2187208 lncRNA downstream 131875 21007167 ~ 21007641 (-) True G1912483
TU2187183 lncRNA downstream 168958 20968447 ~ 20970558 (-) True G1912469
TU2187168 lncRNA downstream 189299 20948535 ~ 20950217 (-) True G1912454
TU2188123 lncRNA upstream 19968 21171643 ~ 21175302 (-) False G1913296
TU2188128 lncRNA upstream 21257 21172932 ~ 21173561 (-) False G1913296
TU2188130 lncRNA upstream 21257 21172932 ~ 21175302 (-) True G1913296
TU2188231 lncRNA upstream 193625 21345300 ~ 21345641 (-) True G1913393
TU2188254 lncRNA upstream 237528 21389203 ~ 21389481 (-) True G1913410
XM_036962163.1 mRNA downstream 12932 21123378 ~ 21126584 (-) True LOC118944112
XM_036962164.1 mRNA downstream 12933 21117109 ~ 21126583 (-) False LOC118944112
XM_036962161.1 mRNA downstream 22239 21112071 ~ 21117277 (-) True LOC110503990
XM_021582707.2 mRNA downstream 28212 21088735 ~ 21111304 (-) True LOC110503992
XM_021582708.2 mRNA downstream 28213 21088735 ~ 21111303 (-) False LOC110503992
XM_021582715.2 mRNA upstream 49458 21201133 ~ 21212559 (-) True LOC110503995
LOC118944001 mRNA upstream 336137 21487812 ~ 21499941 (-) True LOC118944001
XM_021582720.2 mRNA upstream 353058 21504733 ~ 21520596 (-) False LOC110504001
XM_021582723.2 mRNA upstream 353058 21504733 ~ 21520596 (-) False LOC110504001
XM_021582724.2 mRNA upstream 353058 21504733 ~ 21520596 (-) False LOC110504001
TU2187184 other downstream 163280 20972679 ~ 20976236 (-) True G1912470
TU2186472 other downstream 678079 20460668 ~ 20461437 (-) True G1911862
TU2185535 other downstream 1448003 19691066 ~ 19691513 (-) True G1910996
TU2185117 other downstream 1647908 19490717 ~ 19491608 (-) True G1910651
TU2185002 other downstream 1806291 19332841 ~ 19333225 (-) True G1910539
TU2188551 other upstream 711913 21863588 ~ 21864274 (-) True G1913665
TU2188549 other upstream 719578 21871253 ~ 21872149 (-) True G1913663
TU2190851 other upstream 2600168 23751843 ~ 23752463 (-) True G1915836
TU2193838 other upstream 5011790 26163465 ~ 26165245 (-) True LOC110504083
TU2193901 other upstream 5058741 26210416 ~ 26211871 (-) True LOC110503381

Expression Profile