RNA id: XM_021582757.2


Basic Information

Item Value
RNA id XM_021582757.2
length 1704
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC110504001
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 21504733 ~ 21520596 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGGGACAAAAATAGcctcagtggtgtgtgtggcTTGGGTGCGCTCTACTATTAGGGGAGGCAGCCTTTACTTTTACTAACCTACGTTAGTACCTCAttctacagaacacactgtaacAAAATGGTTATAAAAGTATTTCTAGCTTCTTCATCAGGATCGACAGCGATCAAAAAGAAGCAACAGGATGTGCTTGGGTTCCTGGAGGCCCTGAAAGTGGACTACGCTCCATTGGACATTGCCTGCAGTGAGGACAACCGCATGTGGATGAGGGAAAATGTCCCTGTGGAGAAAAAGCCCACCAACGGGATCCCTCTACCCCCTCAGATCTTCAACGAAGAGAGCTACTGTGGGGACTACGAGACATTCTTTGACGCCAAAGAAGACAATGCGGTATATGCCTTCCTGGGTCTGCCACCTCCTCCAGGTTCCAAGGAAGCGAAAGAGGCATATCTCCTTGAAAATGGGCCTGTTGAGAATGGAACCATTGTAAATGGAACTGATGATGCTGAGGATGAAGAGAACCTTGAAGCGGAGGAGGAGAACATTGATGATGACACACTAGCCCCCGTGAAGGAGGAAGAAGCCCAGGaggaagtagaggatgaagaggcTAAGGGAGAAGATGATCAGCCGGTTTCTGAGgaagaagaggatgagtagTTACAGCCAAGAAAGGTTTAGGATGTGATTTACTACTGCCCAGCCTAGAGAGACCCCTTGTTCCGGCCCTTCCTGACCCCTCTGATCCCTCAGACCGTCCCCCACCGGACTACCCACATTGCCCCCAACTGCTCACTGGGAACGCACATGTCCCCCTGCTGGAACCTGCTGGCTGAAACCTGCCAATCACACACTGTCTGTACTGCCCGCCCATACTCCAGAGATAACCCCCTGTTTTACCAGATGTTTATATTGCATTCAGTGTGTAGCTCAATTAAATAGTGTTATCAGTTTGTAGTTTTTAGCAGCTTTTCTAATTGTACATACACAGTCATATGTTAAGCATTTAAATATTTCAGACAAACTTCTCATGTTTCAAATTGAAAAGGTTCGTTTTATACCACAGTTTGTATAGGATGATGAGCATCTTCACCACCAACACCTTAGCAGTCAATGACCAACAGCTTTAACCCTGTGAGTATCTGAGTGAAGATCACTCTACTGTGAACTGCAACCAGTGAATGGACTCTCGGACTGAAACCGATCTATCAATGCAGTGCCTCTCACTCGATGCCGGCAAAGATGTTAGATTTATATGTGTGAATGCAACCCAGTGACTCTCAATGCCTCAGTCCAACATGAGAAAGACCCTCATGTAGGGTTTCCACTAGCTTccatagccacaaagtcagattccacagccacaaagtcacatATGACAAAAAAAATTGCCTTTTGGTCTTACTTTAATGTTAGGGTGAaggataaggttagcagtgtgattagggttaggtttcaaataaaatgttaagaaattgtagaaatgggcggggtttagccataattatgactttgtggctatggATACTAGTGACGACCCTCATTGTAGCGTGCCTTATGACAGCTGCTGGACACCATTCACTGAATATTACTGTTTGCTGATTTACTCTGCAGTTTGTTGAATGTAAAAAGAAGTGGATGACTAAGAGATCCTCCCTAGATGTAAGAGAGGTAAAATGCCAATAAAGTTACATGGCCTATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2188353 lncRNA downstream 9225 21495267 ~ 21495508 (-) True G1913483
TU2188344 lncRNA downstream 22126 21482339 ~ 21482607 (-) True G1913474
TU2188339 lncRNA downstream 32570 21471929 ~ 21472163 (-) True G1913469
TU2188332 lncRNA downstream 45652 21453729 ~ 21459081 (-) True G1913462
TU2188268 lncRNA downstream 61450 21395249 ~ 21443283 (-) True G1913413
TU2188368 lncRNA upstream 5247 21525843 ~ 21526155 (-) True G1913497
TU2188366 lncRNA upstream 15752 21536348 ~ 21537642 (-) True G1913495
TU2188374 lncRNA upstream 21671 21542267 ~ 21542486 (-) True G1913503
TU2188386 lncRNA upstream 29932 21550528 ~ 21551388 (-) True G1913515
TU2188391 lncRNA upstream 39105 21559701 ~ 21559966 (-) True G1913519
LOC118944001 mRNA downstream 4792 21487812 ~ 21499941 (-) True LOC118944001
XM_021582715.2 mRNA downstream 292174 21201133 ~ 21212559 (-) True LOC110503995
XM_021582711.2 mRNA downstream 353058 21139516 ~ 21151675 (-) True LOC110503993
XM_036961224.1 mRNA downstream 353063 21139516 ~ 21151670 (-) False LOC110503993
XM_021582710.2 mRNA downstream 353067 21139516 ~ 21151666 (-) False LOC110503993
XM_036961210.1 mRNA upstream 5632 21526228 ~ 21532483 (-) False LOC110504006
XM_021582773.2 mRNA upstream 5632 21526228 ~ 21532663 (-) False LOC110504006
XM_036961209.1 mRNA upstream 5632 21526228 ~ 21533948 (-) False LOC110504006
XM_036961211.1 mRNA upstream 5632 21526228 ~ 21535878 (-) True LOC110504006
XM_036961477.1 mRNA upstream 106085 21626681 ~ 21642326 (-) False LOC110504009
TU2187184 other downstream 528497 20972679 ~ 20976236 (-) True G1912470
TU2186472 other downstream 1043296 20460668 ~ 20461437 (-) True G1911862
TU2185535 other downstream 1813220 19691066 ~ 19691513 (-) True G1910996
TU2185117 other downstream 2013125 19490717 ~ 19491608 (-) True G1910651
TU2185002 other downstream 2171508 19332841 ~ 19333225 (-) True G1910539
TU2188551 other upstream 342992 21863588 ~ 21864274 (-) True G1913665
TU2188549 other upstream 350657 21871253 ~ 21872149 (-) True G1913663
TU2190851 other upstream 2231247 23751843 ~ 23752463 (-) True G1915836
TU2193838 other upstream 4642869 26163465 ~ 26165245 (-) True LOC110504083
TU2193901 other upstream 4689820 26210416 ~ 26211871 (-) True LOC110503381

Expression Profile