RNA id: XR_005039340.1


Basic Information

Item Value
RNA id XR_005039340.1
length 5615
RNA type mRNA
GC content 0.54
exon number 32
gene id LOC110504016
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 21735107 ~ 21755619 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATTCTGACAAAGCTGGTGGCAAATTAAGATGTTTTACTCAGGCCGTTTAACTCTGAATATGTTTCACAATTCCGGTTTACTTAAGGGGTGGTTCTCAATGCGACAGCAGCTTGGTCTTGTCGgtttagttcattgactgtataAACAAAACACTTGGAGTGGGATATctcgcttcctcttccatctctgatTCTGAGTCGTTTCCGCCGCCATTGCAGGTTTGGACTGAGATCAGTGCTAAAGCCACTGCCATCCATTCAGGCAGTGGAGAAAACGCACAAACATCCGGCGGCTACACTTGACATACGATTTTGGAATCACGACTaagaaaatatacaaaataacacATTGATTGGACGTAAAGATTCACTGTCTGACTACGATTTAAGAATCAGTGAGTGAGGAGGTCGTAGCTAGCACAGTGCTAACCTAGCCAGCTACCGTAGCTGCTTAGCTAGAATTTCAGGACACCGTAAAAGCAAAGAAAAACCCGCAATGGCACAAATACTACCTATCCGATTCCAGGAGCACTTGCAGCTCCAGAACCTGGGGATCAACCCAGCTAACATTGGATTCAGCACCCTGACTATGGAGTCTGATAAGTTCATCTGTataagagagaaggtgggcgagcAGGCACAGGTGGTCATCATTGATATGGCCGACCCCAACACTCCCATCCGTAGACCCATCTCTGCAGATAGCGCCATCATGAACCCTGCTAGCAAAGTTATTGCCCTCAAAGACGCTGCAAAAACCCTCCAGATTTTCAACATTGAGATGAAGAGCAAGATGAAGGCTCACACCATGACTGATGATGTCACTTTCTGGAAGTGGATCTCCCTCAACACTGTAGCACTTGTCACAGACAATGCTGTCTACCATTGGAGCATGGAGGGAGACTCCCAGCCAGCCAAAGTCTTTGACCGACACTCCAGCCTTGCAGGCTGTCAAATCATCAACTACCGCACCGACGCCAAACAGAAATGGCTGCTTCTCATTGGGATTTCAGCACAGCAAAACCGTGTGGTGGGAGCCATGCAGCTGTACTCTGTGGACAGGAAGGTGTCCCAGCCCATTGAGGGCCACGCCGCAGGCTTTGCCCAGTTCAAAATGGAGGGCAACACAGAGGAATCCACACTGTTCTGCTTCGCTGTCCGAGGGCAAGCTGGAGGAAAGTTACACATAATTGAAGTGGGGACCCCACCAACAGGCAATCAGCCATTTCCAAAGAAGGCAGTGGATGTGTTCTTCCCTCCTGAGGCCCAGAATGACTTCCCTGTAGCTATGCAGatcAGCTCTAAGCAGGATGTTGTCTTTCTCATCACCAAATATGGCTACATCCACCTGTATGACCTGGAGACTGGCACCTGTATTTACATGAACAGGATCAGCGGGGAGACCATCTTTGTTACAGCCCCACATGAACCAACCGCTGGCATCATTGGAGTCAACAGGAAAGGACAGgtgttgtctgtgtgtgtggaggaggagaacATCATCCCCTACATCACCAACGTGCTCCAGAACCCAGACCTGGCCCTTCGTATGGCTGTGCGCAACAACCTGGCTGGGGCCGAGGAGCTGTTCGCCCGCAAGTTCAACACCCTGTTCGCTGCAGGGAACTACTCTGAGGCTGCCAAGGTGGCCGCCAATGCTCCCAAGGGTATCCTGCGTACCCCAGACACCATCCGTAAATTCCAGAGTGTGCCGGCCCAGCCGGGCCAGACCTCTCCCCTGCTGCAGTACTTTGGCATCCTGCTGGACCAGGGCCAGCTCAACAAGTTTGAGTCCCTGGAGCTGTGCAGGCCCGTCTTACAGCAGGGACGCAAGCAGCTGCTGGAGAAATGGCTGAAAGAGGACAAGCTGGAGTGTTCTGAGGAGCTGGGGGACCTGGTGAAGTCAGTGGATCCCACTCTGGCCCTCAGCGTCTACCTCAGGGCCAACGTGCCCAACAAGGTCATCCAGTGCTTCGCTGAGACCGGACAGTTCCAGAAAATTGTCCTCTATGCCAAAAAGGTGGGCTACACCCCAGACTGGATGTTCCTGCTGAGGAACGTGATGAGAATCAGTCCAGAACAAGGCCTGCAGTTCTCCCAGATGCTGGTGCAGGACGAGGAGCCGCTGGCTGACATCACACAGATCGTTGACGTGTTTATGGAGTATAACCTGATCCAGCAGTGTACCTCCTTCCTCCTGGATGCCCTGAAGAACAACAGGCCTGCTGAGGGGCCTCTGCAGACACGCCTGCTGGAGATGAATCTGGTCCACGCCCCACAGGTGGCTGATGCCATCCTGGGCAACCAGATGTTCACCCACTACGACCGTGCCCACGTTGCCCAGCTGTGTGAGAAGGCTGGCCTGCTGCAGAGGGCTCTGGAGCATTACACCGACCTGTACGACATCAAACGGGCTGTGGTGCACACACACCTGCTCAACCCTGAGTGGCTGGTGAACTTTTTTGGCTCCCTATCAGTGGAGGACTCTCTGGAGTGTCTTCGGGCCATGCTGTCGGCCAACATCCGTCAGAACCTGCAGATCTGTGTCCAGGTGGCCTCTAAGTACCACGAGCAGCTCTCCACCAACTCCCTCACCGAGCTCTTTGAGTCCTTCAAGAGCTTCGAAGGTCTGTTCTACTTCCTGGGTTCCATCGTTAACTTCAGCCAGGACCCAGAGGTCCACTTCAAGTACATCCAGGCCGCCTGTAAGACGGGACAGATCAAAGAggtggagaggatctgcagagagagcAACTGCTACGACCCCGAACGAGTCAAGAACTTCCTCAAGGAAGCTAAGCTGACTGATCAGCTCCCCCTGATCATCGTGTGTGACCGCTTCGACTTTGTCCACGACCTGGTCCTCTACTTGTACCGCAACACCCTGCAGAAATACATTGAGATCTATGTGCAGAAGGTGAACCCCAGCCGTCTGCCGGTGGTGATTGGAGGGCTGCTGGATGTGGACTGTGCTGAGGATGTGATTAAGAACCTGATcctggtggtgaaaggacagttctCCACTGATGAACTGGTGGCTGAGGTGGAGAAGAGGAACAGACTGAAACTGCTCCTACCCTGGCTGGAGGCCCGTATCCACGATGGCTGTGAGGAGCCAGCTACCCACAATGCCCTGGCCAAGATCTACATCGACAGCAACAACAACCCAGAGCGCTTCCTGCGTGAGAACACCTTCTACGACAGCCGCGTGGTGGGCAAGTACTGTGAGAAGAGGGACCCCCACCTGGCTTGCGTGGCCTACGAGAGAGGACAGTGTGATCAGGAGCTCATTAATGTGTGCAATGAGAACTCCCTGTTCAAGAGTCTGTCTCGCTACCTGGTTCGCCGTAAAGACCCTGAGCTGTGGGCCAGTGTGCTGCTGGAGACTAACCCATTCAGAAGACCCCTCATCGACCAGGTTGTTCAGACTGCCCTGTCTGAGACCCAGGACCCAGAGGAGGTTTCAGTCACAGTCAAGGCCTTCATGACTGCAGACCTCCCCAACGAACTCATTGAGCTGCTGGAGAAGATCGTTCTGGATAACTCAGTCTTCAGTGAACACAGAAACCTTCAGAACCTGCTGATTCTAACAGCCATCAAGGCAGACCGTACCCGTGTGATGGAGTACATCAACCGCCTGGACAACTACGACGCCCCTGACATCGCAAACATCGCCATCAGCAACGAGCTCTTTGAGGAGGCATTCGCCATCTTCAGGAAGTTTGACGTCAACACCTCTGCCGTGCAGGTTCTGATTGAGCACATTGGGAACCTGGACCGGGCCTATGAGTTTGCTGAGCGCTGCAATGAGCCTCCAGTGTGGAGCCAGCTGGCCAAGGCTCAGCTCCAGAAGGGTCTGGTGAAGGAGGCCATCGACTCCTACATCAAGGCTGACGACCCCTCTGCCTACATGGAGGTGGGCCAAGCTGCAGCCCAGAGCGGTAACTGGGAGGACCTAGTGAAGTTCCTTCAGATGGCCCGTAAGAAGTCCCGTGAGTCCTACGTGGAGACCGAGCTCATCTTCGCCCTGGCCAAGACCAACCGCCTGGCTGAACTGGAGGAGTTCATCAATGGACCCAACAACGCCCACATCCAACAGGTGGGTGACAGGTGTTATGATGAGAGGATGTATGATGCGGCTAAGCTGCTCTACAACAATGTGTCCAACTTCGGGCGGCTAGCGTCCACCCTGGTCCACCTGGGAGAGTATCAGGCCGCCGTGGACGGAGCCCGCAAGGCCAACAGCACCCGCACCTGGAAAGAGGTGTGCTTTGCCTGTGTGGATGGGAAAGAGTTCCGCCTGGCCCAGATGTGTGGCCTGCACATCGTTGTCCATGCTGATGAACTGGAGGAGCTCATCAATTACTACCAGGACCGTGCTTACTTTGAGGAGCTGATCACCATGCTGGAGGCAGCCCTGGGCCTGGAGCGGGCTCACATGGGCATGTTCACCGAGCTGGCCATCCTCTACTCCAAGTTCAAACCCCAGAAGATGAGGGAGCATCTGGAGCTCTTCTGGTCCAGAGTCAACATTCCAAAGGTCCTGAGGGCTGCAGAGCAGGCCCACCTGTGGGCGGAGCTGGTCTTCCTCTATGACAAGTATGAGGAGTTTGACAATGCCATCATCACCATGATGAGCCACCCCTCCGATGCCTGGAAGGAAGGACAGTTCAAAGACATCGTCACCAAGGTGGCCAATGTGGAGTTATACTACAAGGCTATCCAGTTCTACCTGGAGTTCAAACCATTGTTACTGAACGACCTGCTCATAGTGTTATCACCACGACTCGACCACACCCGCGCTGTCAACTTCTTCATGAAGACCAAGCAGCTGTCACTGGTCAAGCCATACCTGCGGTCAGTGCAGAACCACAACAACAAAGGTGTCAACGAAGCACTTAACAACCTCTTCATCACAGAGGAAGACTATGCGGCCCTGCGTGCCTCCATCGATGCCTACGACAATTTTGACAACATCACCCTGGCCCAGGGCCTGGAGAAGCACGAGCTGATTGAGTTCAGGAGGATCGCTGCCTACCTCTTCAAAGGCAACAACCGCTGGAAGCAGAGCGTGGAACTCTGCAAGAAGGACAAACTCTACAAGGATGCCATGCAGTATGCGTCTGAGTCAAAAGACGTGGAGCTGGCTGAGGAGTTGTTGGCCTGGTTCCTGGAGGAGGATAAGAAGGAGTGCTTTGCCGCCTGCCTCTTCACCTGCTACGACCTGCTGAGGCCTGACGTGGTGCTGGAGACGGCCTGGAGGCACAACATCATGGACTTCTCCATGCCCTACTTCATCCAGGTCATGAGGGAGTACCTCTCCAAGGTTGATGCGATTAAGGAAAAGGTGAAAGTCCAGTCCATTTCCAGTCATTCTTTTTGACCCTCTGTAGTCTGTAGTTTGGAGGAGTAAAACTAGAGGAAACTGCATGAGTCTGTCCCCTCCCCATGTCACTGCTGCTTCTGACTCCACACCTTGACTAGACAACCCACCCAGAGTCGTCTGGAGTGGGGCTCTCCCACCCTGCCTTTGGTCGACAAGCTTGACGCCTCAGAGTCACTAAGGAAACAGGAGGAGCAGAACACCGAGTCCCAGCCCATTGTTTATGGTACG

Function

GO: NA

KEGG:

id description
K04646 CLTC; clathrin heavy chain

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2188442 lncRNA downstream 30189 21705625 ~ 21706387 (-) True G1913567
TU2188441 lncRNA downstream 31302 21705041 ~ 21705274 (-) True G1913566
TU2188439 lncRNA downstream 53272 21669061 ~ 21683304 (-) True G1913564
TU2188463 lncRNA downstream 71297 21665040 ~ 21665279 (-) True G1913588
TU2188459 lncRNA downstream 76741 21659553 ~ 21659835 (-) True G1913584
TU2188499 lncRNA upstream 38008 21793627 ~ 21794249 (-) True G1913624
TU2188547 lncRNA upstream 122603 21878222 ~ 21879232 (-) True G1913661
TU2188537 lncRNA upstream 144028 21899647 ~ 21905031 (-) True LOC110504027
TU2188692 lncRNA upstream 316221 22071840 ~ 22072322 (-) True G1913793
TU2188648 lncRNA upstream 323676 22079295 ~ 22080052 (-) True G1913752
XM_036962179.1 mRNA downstream 6256 21712095 ~ 21730320 (-) True slc37a4a
XM_036962178.1 mRNA downstream 6298 21712095 ~ 21730278 (-) False slc37a4a
XM_036962180.1 mRNA downstream 6327 21712095 ~ 21730249 (-) False slc37a4a
XM_021582785.2 mRNA downstream 16227 21712086 ~ 21720349 (-) False slc37a4a
XM_021582789.2 mRNA downstream 26040 21708100 ~ 21710536 (-) True LOC110504015
XM_021582797.2 mRNA upstream 2419 21758038 ~ 21779579 (-) False vaspb
XM_021582795.2 mRNA upstream 2419 21758038 ~ 21790359 (-) False vaspb
XM_021582798.2 mRNA upstream 2419 21758038 ~ 21790360 (-) True vaspb
XM_021582799.2 mRNA upstream 41347 21796966 ~ 21800465 (-) True snrpd2
XM_021582800.2 mRNA upstream 63635 21819254 ~ 21822721 (-) True foxg1c
TU2187184 other downstream 760340 20972679 ~ 20976236 (-) True G1912470
TU2186472 other downstream 1275139 20460668 ~ 20461437 (-) True G1911862
TU2185535 other downstream 2045063 19691066 ~ 19691513 (-) True G1910996
TU2185117 other downstream 2244968 19490717 ~ 19491608 (-) True G1910651
TU2185002 other downstream 2403351 19332841 ~ 19333225 (-) True G1910539
TU2188551 other upstream 107969 21863588 ~ 21864274 (-) True G1913665
TU2188549 other upstream 115634 21871253 ~ 21872149 (-) True G1913663
TU2190851 other upstream 1996224 23751843 ~ 23752463 (-) True G1915836
TU2193838 other upstream 4407846 26163465 ~ 26165245 (-) True LOC110504083
TU2193901 other upstream 4454797 26210416 ~ 26211871 (-) True LOC110503381

Expression Profile