RNA id: XM_021582795.2


Basic Information

Item Value
RNA id XM_021582795.2
length 3177
RNA type mRNA
GC content 0.50
exon number 14
gene id vaspb
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 21758038 ~ 21790360 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAAGGTTAGTGCAATCCGGCATCCTTGGGACATGGACATCACTCCCAAAAGCCGTTTTAAAATGTCCACTTCATTGGGACGTACCACTGATCCCAGATAGCAAGGACCTATTTTCTAACTACAGAGAGGAGGGGCCGGTGAACATGGAATGAAAACCTACTTCGAGTTAAACACCAACGAAATTACGTAGACCAGGACGAAGGTTCACAGCATTACCGATCAAGAGGAGTTCCCACTTTGAGAAAAATCAGAAAGAGACTTTAGTTTGTCCTGGCACGGTTTATGGTAGCCTGTTTAGAAAGGAGAGATGAGTCTCGGATCCTGATTGGAGTTGACAAGCGCGCTCCACTACTGTATCCAGCCTTTCAACCCCTCTCCGAAACCAGGAAATCGTCGAGGTGTGCTTATCTTTATCTTGCTTGTGGATCGTAGGCTACCCCTTTGCGGGTAGATCCATGTGTATCTCGCCGATATCGTCgttttttatttaattgttttgctTTTGAACCCGGGCTCAGATCTGAAGCCGAAAAAACTGCATCGGAGTGGATCTCTCTTCTCGCCTAACAATGAGTGAGTCCAGTATCTGTCAGGCTCGGGCCACGGTGATGATCTATGATGATGGAAATAAGATGTGGCTCCCGGCAGGAACAGGGCCTCAGACCTTCAGCAGGGTCCAGATCTACCACAACCCCTCCACTAACGCCTTCAGAGTGGTGGGACGCAAGATGCAGACAGATCAACAGGTGGTGATTAACTGTCCGATTGTGAAGGGCCTGAAGTACAATGAGGCCACGCCCAACTTCCACCAGTGGCGAGACGCGCGGCAGGTGTGGGGGCTCAACTTCGGCAGTAAGGAGGATGCCGCCCTCTTCGCCAGCGGAATGGCCCATGCACTGGAGGTGCTCAACTCCCTGGCAGACGCAGGTTACGCTACCCTCCCCCGCCCAGTGTCAAATGGACCTTCCCCAGAGGAGCTGGAACAGCAGCGGAGGCTGgagcagcaagagagagagcggcaggagtgggagagactggagagagagagacaacaagctGCAGCAGtgCCCACTCCTCCAGTCCCACCGTTGGCCCCCCCAGCACCTCCGGGGCCTCCTCCACCCCCAGGACCTCCTCCGTCTgggccccctcctccccctggacCTCCTCCCCCAGGACCCCCGGCCGCAGGATCAGGACCCCCACCCGCCCCACCGCTGCCCTCCCCAGGAGGAGATGGGGGCCTAGGGGGAGGTGCAGGGGGCCTGGCGACAGCCTTAGCTGCGGCCAAGCTCCGCAGAGTGGCCAagGACGATAGTGGTAGTGTTGCTGCTGCTTCTTCTGCTGCAGCACCGGCTGCCAAGCCTGATCAAAGCCGCACCAGTGGGTCCatcggtggtggtggtggtggaggaggcctGATGGGTGAGATGGCATCCATCCTGGCACGGAGGAAAAAAATGGCAGACGGTGGGGCTAAGCCACCTGCTAAGACAGCAGATAATGATGACTCAGAGTCTCAAGGCCAAAGTGACACTCTTGGAAGAAGACCATGGGAGAAATCAGCCACTATGCCCAGGAATAACTCCATCTCCAAGAGCATGGACTCCACCTCTCCCTTGCCCCAGGGTCCCAGGGTGAAGCATGCAGGTGGTAGTAATGATGCTGGAGGTGGTGAAGAGACGGATATGGAGAGGATTAAACAGGAGATTCTTGACGAGATGCGGAAGGAGTTACAAAAAGTCAAGGAGGAGATAATCGGAGCCTTTATTGAGGAGCTACAGAAGAGGGGTTCCACATAGTTCTACTAGAGGAACAGGGGGATGCGATGGATGGAGGTTATGGCCCTTTGTGGACCTCTCCCATATCACCCCCTCCAGTGTAGCCCAGGGATTTTTCTTTCTCCCCTTCACACAttctcacattcacacacacctacatactTGCACACGACATGTACACGTTAACCCAGGGAACCGATTCACAAATACAGGACTAGATCACCTACTACCACCCCATCTGTGATGACACAACCTCTCCTCACTCATCCCTTCTTGTATCCAACTCTTCCTTCATTTCATGAGAACCACTGTAGAGCACATAATCACGGCTGCTGTTACTCTTACTCCTTGTCATGTACAATTGTTTCTCTCCCCCCATGTATCTGCCCCATAGAAATCCTGCTCCTATTCACTCTCTTTGTCAGACAGACCAGTGTTTTTACTGGGGTCTTCAGTATTCAGGGAAGATCATATCATTAATTCTTGTTACTGTAATGGCAGAGTGGTTGGTTGGCTTTTGTAAGAATCCTCTTTAACTTGGCACAGCTTCGACTTCAAACACGGCcttcaaataaaaacattttatatgGGCCAAGACGACATAGGCCTATCTTGAGAATGTGTGGTGATGGGAGGAAACTAACAGATTGTACAGGGACCCCATGGTGGAGGGCTTTCATCCACAGCACACACTGCTCCCTTCAGGCCTGGTGCACAAGAGCTTGTACTGCACCACTGCCTTGAAGTCAGCGCTACTGCTCCCAAGTGTACTGCTCTGTCAATGGCCAAAAAAGAGACCCTACACAAACTTCAGTTCTACAGACTTTGAGGAGAAGTCAGAGGAGACATGCAAAGGGATTGTGATGGACGACCTCCCGGAGTACTGTGGTTCTGTGCTATGGAGGGAATCCTAGTTCTTTCTGCATTGCACTTGGCCTGGAGAAAGTGTGTATTTTGTGTGCCACTCAGAATCGACAAAACACTCATCTTTCCCTTCTGCTCAAAATGAGACACTAATAATTTGCCAGTGCAGTGGTCCTAAACTgtactgtttgttttgtttgaaaaatgttttttttaacaacATTGAAATATAAGAATTCGGCCATGACTAAGTCAATTAATTGGCCATGACCAACTGTCTTGGagaatatatattaaaaaaagaaTTGGGGGGGCTAGCAAAATTGAAATGATGTTTCTATTTTAATTGAGGTGAATGGGACATTTTTGGATTGCTTTCTTTTTAAGAGATGTAATTGGgttactgtttttgttttgtttttctaatAGAGAATAGGCTTTTTACACTGAAATATAAATAAAACAGCGTAGAGACACTGGATTAGAGATGCCTTTTATAGTCAAATACAGCCGCTTCTTGTAATGCATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2188442 lncRNA downstream 51651 21705625 ~ 21706387 (-) True G1913567
TU2188441 lncRNA downstream 52764 21705041 ~ 21705274 (-) True G1913566
TU2188439 lncRNA downstream 74734 21669061 ~ 21683304 (-) True G1913564
TU2188463 lncRNA downstream 92759 21665040 ~ 21665279 (-) True G1913588
TU2188459 lncRNA downstream 98203 21659553 ~ 21659835 (-) True G1913584
TU2188499 lncRNA upstream 3268 21793627 ~ 21794249 (-) True G1913624
TU2188547 lncRNA upstream 87863 21878222 ~ 21879232 (-) True G1913661
TU2188537 lncRNA upstream 109288 21899647 ~ 21905031 (-) True LOC110504027
TU2188692 lncRNA upstream 281481 22071840 ~ 22072322 (-) True G1913793
TU2188648 lncRNA upstream 288936 22079295 ~ 22080052 (-) True G1913752
XM_021582790.2 mRNA downstream 2419 21735107 ~ 21755619 (-) False LOC110504016
XR_005039340.1 mRNA downstream 2419 21736576 ~ 21755619 (-) True LOC110504016
XM_021582791.2 mRNA downstream 2420 21735107 ~ 21755618 (-) False LOC110504016
XM_021582792.2 mRNA downstream 2422 21735107 ~ 21755616 (-) False LOC110504016
XM_021582799.2 mRNA upstream 6607 21796966 ~ 21800465 (-) True snrpd2
XM_021582800.2 mRNA upstream 28895 21819254 ~ 21822721 (-) True foxg1c
XM_021581800.2 mRNA upstream 34560 21824919 ~ 21826309 (-) False pglyrp5
XM_021581801.2 mRNA upstream 34560 21824919 ~ 21826309 (-) True pglyrp5
NM_001165064.2 mRNA upstream 36491 21826850 ~ 21830323 (-) True polr2i
TU2187184 other downstream 781802 20972679 ~ 20976236 (-) True G1912470
TU2186472 other downstream 1296601 20460668 ~ 20461437 (-) True G1911862
TU2185535 other downstream 2066525 19691066 ~ 19691513 (-) True G1910996
TU2185117 other downstream 2266430 19490717 ~ 19491608 (-) True G1910651
TU2185002 other downstream 2424813 19332841 ~ 19333225 (-) True G1910539
TU2188551 other upstream 73229 21863588 ~ 21864274 (-) True G1913665
TU2188549 other upstream 80894 21871253 ~ 21872149 (-) True G1913663
TU2190851 other upstream 1961484 23751843 ~ 23752463 (-) True G1915836
TU2193838 other upstream 4373106 26163465 ~ 26165245 (-) True LOC110504083
TU2193901 other upstream 4420057 26210416 ~ 26211871 (-) True LOC110503381

Expression Profile