RNA id: XM_021581800.2


Basic Information

Item Value
RNA id XM_021581800.2
length 1033
RNA type mRNA
GC content 0.45
exon number 4
gene id pglyrp5
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 21824919 ~ 21826309 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATATGTTGTTAACAACTTATTCTAAGGAACGTCAAGGAAACTTGCTCTTTTAAATGGCCTCTAGCGACTAAATCAAAAGCAAGTCtggataatataatacatggatTTAAGAGTCACTGTAGAGGTGGTTACTCGGGAACAGTGGGGAGCAGTAGCCCCTCGATGCCGGGAGACCCTCAAGTGTCCTGCTCAAAGAGTTGTCATACACCACACTGCACTGTTGCACTGCAGGGGCATCCGAGAATGTATGGACCAGCTCATCCACATACAGACAATGCATATGCAGGATAGGAACTTTGATGACATTGGATACAACTTTCTTATTGGGGGAGATTGCACAGTGTATGAGGGCCGAGGCTGGGGTGTTGTGGGTGCACATACCAAGGACAATAACCGTGACTCTTTGGGCATTGCCTTCATGGGCAACTTCAACAatgagagCCCTAGTCCAGCAGCCCTGTCATCTGTTAAACAGCTCCTGCAGTGTGGTGTTTCCCAGGGGCATTTGCACCCTGGATTTACCCTGCTTGGGCATAGAGACTTGGGGGACACTGAATGTCCTGGGGAGAGACTATACGCTGCACTAAAACATCTACAATTTCCCTAAACATAACCTCTTCCACAGGCTCAATTGCTACTGGTTCGACAGAGAAAGTGAGTCGGTGGTGAAAGAGAAAACCCTGAACAGCACACTTAACATTTTGGGACTTCCTTGTGTGTTTTTAAACCACTAGATGGGGCAATGATGCTTTATTGTAGCCATGGCCTAAAATGCATACTCTTTTtttcacaagcatttcactagacccgcaataacatctgctaaacacttgtatgtgaccaatcaaatttgatttgataatgggGTTTCCCAAACCCAGTCCTGGGGcccccctgggtgcacattttgtttttgccctagcactacacagctgattcaaatgaccaACTCaccatcaagctttgattatttgaatcagctgtgtagtggaCCATTAGACCACTTTATATATCTGTGTTTTGTAGAGGac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2188499 lncRNA downstream 30670 21793627 ~ 21794249 (-) True G1913624
TU2188442 lncRNA downstream 118532 21705625 ~ 21706387 (-) True G1913567
TU2188441 lncRNA downstream 119645 21705041 ~ 21705274 (-) True G1913566
TU2188439 lncRNA downstream 141615 21669061 ~ 21683304 (-) True G1913564
TU2188463 lncRNA downstream 159640 21665040 ~ 21665279 (-) True G1913588
TU2188547 lncRNA upstream 51913 21878222 ~ 21879232 (-) True G1913661
TU2188537 lncRNA upstream 73338 21899647 ~ 21905031 (-) True LOC110504027
TU2188692 lncRNA upstream 245531 22071840 ~ 22072322 (-) True G1913793
TU2188648 lncRNA upstream 252986 22079295 ~ 22080052 (-) True G1913752
TU2188728 lncRNA upstream 322970 22149279 ~ 22149684 (-) True G1913828
XM_021582800.2 mRNA downstream 2198 21819254 ~ 21822721 (-) True foxg1c
XM_021582799.2 mRNA downstream 24454 21796966 ~ 21800465 (-) True snrpd2
XM_021582798.2 mRNA downstream 34559 21758038 ~ 21790360 (-) True vaspb
XM_021582795.2 mRNA downstream 34560 21758038 ~ 21790359 (-) False vaspb
XM_021582797.2 mRNA downstream 45340 21758038 ~ 21779579 (-) False vaspb
NM_001165064.2 mRNA upstream 541 21826850 ~ 21830323 (-) True polr2i
XR_002470549.2 mRNA upstream 18916 21845225 ~ 21849537 (-) False LOC110504022
XR_005039368.1 mRNA upstream 18916 21845225 ~ 21849537 (-) True LOC110504022
XM_021582804.2 mRNA upstream 59190 21885499 ~ 21895715 (-) False LOC110504025
XM_021582803.2 mRNA upstream 59190 21885499 ~ 21896235 (-) True LOC110504025
TU2187184 other downstream 848683 20972679 ~ 20976236 (-) True G1912470
TU2186472 other downstream 1363482 20460668 ~ 20461437 (-) True G1911862
TU2185535 other downstream 2133406 19691066 ~ 19691513 (-) True G1910996
TU2185117 other downstream 2333311 19490717 ~ 19491608 (-) True G1910651
TU2185002 other downstream 2491694 19332841 ~ 19333225 (-) True G1910539
TU2188551 other upstream 37279 21863588 ~ 21864274 (-) True G1913665
TU2188549 other upstream 44944 21871253 ~ 21872149 (-) True G1913663
TU2190851 other upstream 1925534 23751843 ~ 23752463 (-) True G1915836
TU2193838 other upstream 4337156 26163465 ~ 26165245 (-) True LOC110504083
TU2193901 other upstream 4384107 26210416 ~ 26211871 (-) True LOC110503381

Expression Profile