Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_021581801.2 |
| length | 1030 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 4 |
| gene id | pglyrp5 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048588.1 |
| NCBI id | CM023242.2 |
| chromosome length | 45930806 |
| location | 21824919 ~ 21826309 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0009253 | peptidoglycan catabolic process | biological_process |
| GO:0042742 | defense response to bacterium | biological_process |
| GO:0008745 | N-acetylmuramoyl-L-alanine amidase activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| K01446 | PGRP; peptidoglycan recognition protein |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU2188499 | lncRNA | downstream | 30670 | 21793627 ~ 21794249 (-) | True | G1913624 |
| TU2188442 | lncRNA | downstream | 118532 | 21705625 ~ 21706387 (-) | True | G1913567 |
| TU2188441 | lncRNA | downstream | 119645 | 21705041 ~ 21705274 (-) | True | G1913566 |
| TU2188439 | lncRNA | downstream | 141615 | 21669061 ~ 21683304 (-) | True | G1913564 |
| TU2188463 | lncRNA | downstream | 159640 | 21665040 ~ 21665279 (-) | True | G1913588 |
| TU2188547 | lncRNA | upstream | 51913 | 21878222 ~ 21879232 (-) | True | G1913661 |
| TU2188537 | lncRNA | upstream | 73338 | 21899647 ~ 21905031 (-) | True | LOC110504027 |
| TU2188692 | lncRNA | upstream | 245531 | 22071840 ~ 22072322 (-) | True | G1913793 |
| TU2188648 | lncRNA | upstream | 252986 | 22079295 ~ 22080052 (-) | True | G1913752 |
| TU2188728 | lncRNA | upstream | 322970 | 22149279 ~ 22149684 (-) | True | G1913828 |
| XM_021582800.2 | mRNA | downstream | 2198 | 21819254 ~ 21822721 (-) | True | foxg1c |
| XM_021582799.2 | mRNA | downstream | 24454 | 21796966 ~ 21800465 (-) | True | snrpd2 |
| XM_021582798.2 | mRNA | downstream | 34559 | 21758038 ~ 21790360 (-) | True | vaspb |
| XM_021582795.2 | mRNA | downstream | 34560 | 21758038 ~ 21790359 (-) | False | vaspb |
| XM_021582797.2 | mRNA | downstream | 45340 | 21758038 ~ 21779579 (-) | False | vaspb |
| NM_001165064.2 | mRNA | upstream | 541 | 21826850 ~ 21830323 (-) | True | polr2i |
| XR_002470549.2 | mRNA | upstream | 18916 | 21845225 ~ 21849537 (-) | False | LOC110504022 |
| XR_005039368.1 | mRNA | upstream | 18916 | 21845225 ~ 21849537 (-) | True | LOC110504022 |
| XM_021582804.2 | mRNA | upstream | 59190 | 21885499 ~ 21895715 (-) | False | LOC110504025 |
| XM_021582803.2 | mRNA | upstream | 59190 | 21885499 ~ 21896235 (-) | True | LOC110504025 |
| TU2187184 | other | downstream | 848683 | 20972679 ~ 20976236 (-) | True | G1912470 |
| TU2186472 | other | downstream | 1363482 | 20460668 ~ 20461437 (-) | True | G1911862 |
| TU2185535 | other | downstream | 2133406 | 19691066 ~ 19691513 (-) | True | G1910996 |
| TU2185117 | other | downstream | 2333311 | 19490717 ~ 19491608 (-) | True | G1910651 |
| TU2185002 | other | downstream | 2491694 | 19332841 ~ 19333225 (-) | True | G1910539 |
| TU2188551 | other | upstream | 37279 | 21863588 ~ 21864274 (-) | True | G1913665 |
| TU2188549 | other | upstream | 44944 | 21871253 ~ 21872149 (-) | True | G1913663 |
| TU2190851 | other | upstream | 1925534 | 23751843 ~ 23752463 (-) | True | G1915836 |
| TU2193838 | other | upstream | 4337156 | 26163465 ~ 26165245 (-) | True | LOC110504083 |
| TU2193901 | other | upstream | 4384107 | 26210416 ~ 26211871 (-) | True | LOC110503381 |
