RNA id: XM_021582804.2


Basic Information

Item Value
RNA id XM_021582804.2
length 3528
RNA type mRNA
GC content 0.52
exon number 4
gene id LOC110504025
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 21885499 ~ 21896235 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAAAAGAGGTGGAGGTAGTTTGGACATTGTTGCCTTTTTATGTGATATAGGCTAATTCACCTCGTAGGAACATTGTTGTAGTGCACAGAATGGCTACTCGACCAGGGTGGTCGGTCGCCACCGCGATTAACCCCCAGTTTACCCCTAGGCTCTATAGAGGGATAGGCTACGTAGCCTATATAAAATACGATTTATTTTCCCCCGTTAGTGGACAATGCATTGGTGGTGTGCGCCTTTTGTCCAGCGACGAAACTTATCTGCAAGAAAAGTTACTTAACTTGATTAATAGTATCCCCATCTGAAAGGATCTAATCGTTTCCATCCTTCGGCTGCAAATATATGCCTTGGGGAAACGGAATGGGGGGTGGAGCACCCGTCTTTTGGAGTCCACTGTTTAATGACCCATTGTTCCCTGCATGTTCCCTGCATGGTCCTACATTTATGTTGTATTTTACTTAGCAAGTGTTTATACATATTCATTCGTTGACTTTTATTTTTCAAATGAGTTCATAACGGGAGCTGATAGGACATGTGAATAGTTATATttgtattaaatacattttcatctGATAGTATAGTATCATATATGACGTGATTTAGATATAAGTTATGAGGCACGTTTCTTTAGACTGTGGAGATTTTCGTTGTCCTTGTGGGAACTAACGTTAGTTTATAGGCAGGGATGTACTATGCTGCCAGAGGTGGGCGTGATGCGTGTCCCACCACTCAAATCACCTCCCGTACGGAGAATCCGACCATCCAACCGATGTCATcccaaataataataaaaagagcGTTAGCTATCCGTGATGGCAACTATTACGCATGCTTAACATTAGCCTATTATAGAGAAAATGGgcttttgtaaaaaataaaatatatattcaaacaatacatgtttttcttttgaatgAATGGGATGTAACAGTTATCTCCTTACGCCCAATTTTCAGCCCTCtatctttaaaaaaagaaagataTACAGGCTAGTAGCCTTTAGACTATACTACACCATCGACTCGCACACGGCCCACTGTTCTCAATAGAACGCTCCTATAAAAGAGGGTGAAAGAAATTAAAGCAGccgcctccctctcctcccagcttCCCCCCGCGTTCCTCTCCTCCGCCGCGGCCCAAACAATAGGCGCATATGGAGAGGAATACTAATGCACACGAGGGACTCGGTGTGCCGACAGGCGAATCATGCACCTCGGCCGCCGCTTTGAATGCACAACTGGAACACATCACCCAATAAGATGTCAACGCAGAGCAAACTGGCTCCGCTTCGACGGTGATGAGTGCGCTCCAGAGCTCCCCCTGGGGGCTGATGCTGGCACTGGAACAGCAGGTGGGCGAGCTGAGAGTGGACACAGATGATGTCACCTATGAGGGGACCCAAGGGGACAGTCGGCCCAGCTCAGGGCTCTATGAGTCGAGTGAGAGCCAGTCTCCAAGGGGGCATTCCTGTCACTCTGACTTCCTAGAGCCCCACCCTGGCTGGGGCTTCAGCAGCACAGAGAGGCCGAAGTCTCTGGGCTATGCCCTCCAGCTGACAGGTGAGAGTCTGATGGAGCCAGCCCCTCATGCTActgttcccctctccttctccgccCCCTATCCACACCTTGAGGGAATCGCTGAGGAGGGTACGGCCGAGGAGCCCTGGCAGTGGGACCTACACTGTGCCCAGGGTTGGGAGGATGAGGACCAGGCCACCCAGGAGGATTTCCAGCAGGCCATGAGGGTTAAAGGCTACATCCTGGGTCTCATCCATCGCTACGCGCTCTCACCCCGGCCCTGCATGCCTCGTACCAGCCTGGGGCCTGACCCCTCCACCCCCTACTCCTCCAGCATAAACAGGCAGAGCAGCCTGCGAAGGAAACCTACTCTTCACACCTCCGAGCACTGCATCTCTGACCCACAGGACCTCTACCCTGACCTTGAGTGCCAGGCCTGGTGGTGTGACTCGCTAGAAAGGGAGGAATGGGGGGGAGAGGCCCCATCCATGGAGAAGGATTGTTATCGGTCTTTACCCTACCCCCACTTCAGACCCCACTCCCTGGCCGGGGGCCATCCACCCTTTCTGGACCCCGTTTGTGGAGCTCTGGACCCTTGTTTTAGTAGTGCGCCTGATTCCCCCAAGCACTACCCGCTGCCCCACTCCCCGGCTTCATATAACCACTTGGTCAgtgcccagtacatccctgggcaGGCCTGCCACACCCCTGTACGCTCCCCCTCACACTTTCCTCCAGAACGCTCCCCCTCACACTATCTTCTAGAGCCCTCCAAACCCAGCCAAACCTTTGTGTCCCCAGACCAGAGCAGCTCAAAGCCCAGGGCCATGGGGAAGAAAAGCCATGAGGAGAGACAGAGCTCCAAAAAGCCTGGCCACAAGACATGCCGCTCCCAGTCTGAGAACAGTCTGATGGGGAAGAGGGCTCTCCCTAAGCGCAGGTACAGCACAGCCGAGCACCCCCAGCACCAGAGGGGCCAGGTCCCATATGCAGGCCCCCAGCATAAGAACAATGCTGGGGGGCGACGCTGGTGCTCCACCCTGGAGCTCAGTCAGGAGGAAGGGGAGACCCAGGGTGAGCAGACCCACAGACGCCCACCTCGTAGGGCCCGCCACACCCAGGCCTGCTCTCATCCCAACCCCAACCACCACTCCCAGGTCCATGCCCAGCCTTGCCTCTCAGAATACCCAGAGAGAGCACCTCTGTGTTGGGGAGAGGAGGGCTATGTGCGGGCCGCCCCTGGGGAGTCAGAGTCCAGCATGAGTGAGGTGTACTCCCCtgcctccagctctctctccagtgattctGATGAGGGGGGGCTGGTATGGCCCCAGCAGCTGCCCCCTCGCCTGGCCCCCTCCGCTTCTTCCTCCCCTAAGGCCTCCCCAGAGGCCTCCTCACAGCCCAAAACCTTTGTCAAAATCAAAGCCTCTCACGCCCTGAAGAAGAAGATTCTGCGATTCCGCGCCGGCTCTCTCAAAGTCATGACCACAGTCTGAGACATATGTCACTGCTTCTACTGCCCATATCCTGCACATTTTAATCCTACATAACCTACAGTTTACACCCTCTGTCTACCTCTGCTGGTTCATGCAGCACTGTCATAAAAAAACAAATCAGCTACTTTACCTTTGGGAAAAACTATGATGTCTGTAACTGGCCTAAGATCAGCATGACGATATCATCTAGCTAAACCACATTTCATCATCATCAGAATGTGCATTAACCATCAACTTGTCTAATGAAGTCCTCCTCTGATGGTTACACTGCCATGTCACATATTGACACCTGAACGTGAACTGCTACCTCTCTTCTCTTAGCTGCACCACCTTGCAGCCTTGACCTGAAGCCAATGTCTGTAGCACTGGCCATGTAGGGGGTGACTGCAGTGaggggtcaacacacacacacatacacacacacacacacacacacttctgtaaaTACCTACCTGTGGCCTTGTTTGTATGAATGTAGTTTGTAAATTAAAGTTTTGTGGTCTCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2188547 lncRNA downstream 6267 21878222 ~ 21879232 (-) True G1913661
TU2188499 lncRNA downstream 91250 21793627 ~ 21794249 (-) True G1913624
TU2188442 lncRNA downstream 179112 21705625 ~ 21706387 (-) True G1913567
TU2188441 lncRNA downstream 180225 21705041 ~ 21705274 (-) True G1913566
TU2188439 lncRNA downstream 202195 21669061 ~ 21683304 (-) True G1913564
TU2188537 lncRNA upstream 3932 21899647 ~ 21905031 (-) True LOC110504027
TU2188692 lncRNA upstream 176125 22071840 ~ 22072322 (-) True G1913793
TU2188648 lncRNA upstream 183580 22079295 ~ 22080052 (-) True G1913752
TU2188728 lncRNA upstream 253564 22149279 ~ 22149684 (-) True G1913828
TU2188876 lncRNA upstream 472080 22367795 ~ 22368000 (-) True G1913968
XR_002470549.2 mRNA downstream 35962 21845225 ~ 21849537 (-) False LOC110504022
XR_005039368.1 mRNA downstream 35962 21845225 ~ 21849537 (-) True LOC110504022
NM_001165064.2 mRNA downstream 55176 21826850 ~ 21830323 (-) True polr2i
XM_021581800.2 mRNA downstream 59190 21824919 ~ 21826309 (-) False pglyrp5
XM_021581801.2 mRNA downstream 59190 21824919 ~ 21826309 (-) True pglyrp5
XM_036961104.1 mRNA upstream 3906 21899621 ~ 21930884 (-) False LOC110504027
XM_036961100.1 mRNA upstream 3906 21899621 ~ 21987485 (-) False LOC110504027
XM_021582812.2 mRNA upstream 3906 21899621 ~ 21987487 (-) False LOC110504027
XM_021582809.2 mRNA upstream 3906 21899621 ~ 21987489 (-) False LOC110504027
XM_036961101.1 mRNA upstream 3906 21899621 ~ 21987491 (-) False LOC110504027
TU2188549 other downstream 13350 21871253 ~ 21872149 (-) True G1913663
TU2188551 other downstream 21225 21863588 ~ 21864274 (-) True G1913665
TU2187184 other downstream 909263 20972679 ~ 20976236 (-) True G1912470
TU2186472 other downstream 1424062 20460668 ~ 20461437 (-) True G1911862
TU2185535 other downstream 2193986 19691066 ~ 19691513 (-) True G1910996
TU2190851 other upstream 1856128 23751843 ~ 23752463 (-) True G1915836
TU2193838 other upstream 4267750 26163465 ~ 26165245 (-) True LOC110504083
TU2193901 other upstream 4314701 26210416 ~ 26211871 (-) True LOC110503381
TU2194781 other upstream 5015069 26910784 ~ 26935725 (-) True LOC110504098
TU2195209 other upstream 5433735 27329450 ~ 27331899 (-) True G1919707

Expression Profile