RNA id: XM_036961086.1



Basic Information


Item Value
RNA id XM_036961086.1
length 1075
RNA type mRNA
GC content 0.43
exon number 6
gene id mxh
representative True

Chromosome Information


Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 22246578 ~ 22265501 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGGAGGAGCCCATCCGTAGGCTGCTCCTAGTTATGCCTAAGTCTTGCCCGGGGGAGAGACTAATTGAATTCATTGAGAAGATTCATGAACTGTGCAGAATTGGGAACTCAAGTGAGAAGAATCTGCATACTTGCCTACGTCCTGTATTCCAACAGTGGGATAGTTATCTCAGTAACACCAAAAGATCATTCCTCAACAAAGTGGCAGCCATGATAAAAAACTATGATAAAGAACATCGTGGGAGAGAGGTGATGACTTTCAGTGACTATTGTGTATATGAACATGCAGTTCAAAAGCACATCCTTGGACTTCAAGAGCCGGCCTTGGATGTCCTGAAAGCCATTGGAGGTATGGTACAAGCAGAGTTTAGAAATGTGTGTGAAGCTTGTTTCAAAAGCTATCCTCAGCTCAGATCCATGGCTTTGAGTAAGATTGACGAAATCCAGACTAAACAGGAAACCAAAGTTGAGAAGAGAATCAAAGAATACATCAATATGGAGCGATTGGTGTACACTCAGGACAGTATTTTCATCAAGGGCTTGAAGGATCATAAAGCTCAGTTCAAAGAAGCCATTGAGGAAGAGCGTTTTTATGACCCAGAGGAAATTGAGGACATCACTGCTACATTCAACAGTACCACATTTGATAGCAGGAAGCTGACCCCAGATAAACTTGGGGTCTACTATGAGATTGTCTACCAGCGCCTGGCAGACTACGTGCCCATGCTGATCCTGCAATTCATGCTTAAGGAGTCAGCCAAGATGCTTTGTATCCAGATTATGGATGAGAGAGACGGAGCTGATGTTGTCAAACTGCTGAGCGAAGACTCTATGGAAGGCCGCAGGAGAGCAGGCCTGCATCAACGCCTGGACCGCCTGAAAAAGGCCCAGGAAAAACTTAGTGAGTTTTAGGACTCTCAATACTGTAGTCCCATTTTATGTGATGTCTAAATGGACTGCCTTCCCTCTGACTCTTGTCATACAACTTGATAATCATTCTTTGACATTGAGGTAATTGATATTTCAAAATTTAAGTGTGTGTCAATATATTACCAAAATCATACATACTGTGCTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2188728 lncRNA downstream 96894 22149279 ~ 22149684 (-) True G1913828
TU2188648 lncRNA downstream 166526 22079295 ~ 22080052 (-) True G1913752
TU2188692 lncRNA downstream 174256 22071840 ~ 22072322 (-) True G1913793
TU2188537 lncRNA downstream 341547 21899647 ~ 21905031 (-) True LOC110504027
TU2188547 lncRNA downstream 367346 21878222 ~ 21879232 (-) True G1913661
TU2188876 lncRNA upstream 102294 22367795 ~ 22368000 (-) True G1913968
TU2188877 lncRNA upstream 102614 22368115 ~ 22368358 (-) True G1913969
TU2188879 lncRNA upstream 103089 22368590 ~ 22369043 (-) True G1913971
TU2189144 lncRNA upstream 141789 22407290 ~ 22407625 (-) True G1914226
TU2189163 lncRNA upstream 192499 22458000 ~ 22458931 (-) True G1914243
XM_021582821.2 mRNA downstream 72779 22081435 ~ 22173799 (-) True LOC110504029
XM_021582822.2 mRNA downstream 148708 22081435 ~ 22097870 (-) False LOC110504029
XM_036961102.1 mRNA downstream 259082 21899621 ~ 21987496 (-) False LOC110504027
XM_021582815.2 mRNA downstream 259083 21899621 ~ 21987495 (-) False LOC110504027
XM_036961099.1 mRNA downstream 259084 21899621 ~ 21987494 (-) False LOC110504027
XM_036961431.1 mRNA upstream 196765 22462266 ~ 22676276 (-) False LOC110503369
XM_036961432.1 mRNA upstream 196765 22462266 ~ 22676276 (-) False LOC110503369
XM_036961433.1 mRNA upstream 196765 22462266 ~ 22676276 (-) False LOC110503369
XM_036961435.1 mRNA upstream 196765 22462266 ~ 22676276 (-) False LOC110503369
XM_036961436.1 mRNA upstream 196765 22462266 ~ 22676276 (-) False LOC110503369
TU2188549 other downstream 374429 21871253 ~ 21872149 (-) True G1913663
TU2188551 other downstream 382304 21863588 ~ 21864274 (-) True G1913665
TU2187184 other downstream 1270342 20972679 ~ 20976236 (-) True G1912470
TU2186472 other downstream 1785141 20460668 ~ 20461437 (-) True G1911862
TU2185535 other downstream 2555065 19691066 ~ 19691513 (-) True G1910996
TU2190851 other upstream 1486342 23751843 ~ 23752463 (-) True G1915836
TU2193838 other upstream 3897964 26163465 ~ 26165245 (-) True LOC110504083
TU2193901 other upstream 3944915 26210416 ~ 26211871 (-) True LOC110503381
TU2194781 other upstream 4645283 26910784 ~ 26935725 (-) True LOC110504098
TU2195209 other upstream 5063949 27329450 ~ 27331899 (-) True G1919707

Expression Profile