RNA id: XM_036961431.1


Basic Information

Item Value
RNA id XM_036961431.1
length 6720
RNA type mRNA
GC content 0.47
exon number 16
gene id LOC110503369
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 22462266 ~ 22676276 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagctggAAGGAGGAGCCTTACCAGGAGCTTCTACTggtagagtgtgagagagagagagagagagagagagaggcgagtaGAGGCACTCAGAGATTGAGAATGGAACATCAGTGAGACCGAGCCAGCATAAGCGCGAGAGAACGCGAGAAAGCTCACGCTGAAAGAGTCTACACATCAACAGGAGAGAGAAGCAACGCTGACCATCGGCAACTCTGAAGAGTgacatagagagaaggagagagagaagaacaagaggaaaagaagaagaagaggaggaagactaGACAGAAGAGTTAAAGCTATATCCCTGACAGCAGGGACATCATTGAGGGACTGTAGCACCCATCCAGAACTGCACAGAAGAGcactgttgtgtgtgtttgtgtgtcaactTCAATTTCACACACTCGTCCACTGTGTTTCAGAGGttcaccctcttcctctccagcCATGATCCCCTGGGTCGTTGTGTTCCTGTGGATCTCCGGACATGgtGTCCAGGCCACATTTTCCCAGCAGCCCcaggacctggtggtggtggctgGCCAGCCCGTCACCCTGCCCTGCTCCATTCCTGGCTACCATGGTGTTGTTCTGTGGATCAAAGATGGCCTGGCTCTGGGCGTTGGCAGAGACCTATCAGGCTACCCTCGTTACACAGTGATTGGGGACCACAGTACAGGGGAACACCACCTTCGGATCCAACGTGTGGAGCTGATGGATGACGCTGTCTTTGAGTGCCAGGCAATCCAGGCAGCCATGCGGTCCCGTCCTGCCCGACTCACTGTACTGGTGCCTCCTGAAGACCCAGTGATCAGTGGTGGTCCGGTGGTGAGCCTGAGAGCAGGAGATCCCCTAAACCTGACCTGCCACGCTGACAACGCCAAGCCAGCCGCATCAATCATCTGGATCCGCAATGGAGAGGTCCTCAATGGAGCCATGTACTCCAAGACACTGCTTCgtgatggaaggagggagagtacGGTTAGCACCCTCTACCTGTCTGCATCCAACATCGAGACAGGCCAGCAGATCATCTGTCGAGCATCTAACAAGGCTGTGCCCAATGGCAAAGAGACCAGCGTCAACATCGACATCCAGCATTTGCCACTTGTCAATCTGTCAGTGGAGCCTCAGCCCATTCTGGAAGGAAACCTGGTCAAGTTCCACTGCTCAGCCAAGGCTAACCCACCTGTCACACTGTACAGGTGGGCCAAAGGGGGCAACGTGATCAAGGAGTTCTCTGGGGACACTTATGAGGTCATTGTGGACCACTCCTTCTTCACTGAGCCTGTCTCCTGTGAGGTCACCAACCCTCTGGGcagcaccaacatcagccgcAACGTCGACGTCTACTttggtccacgcatggcTGCAGAGCCCCAGTCCTTACAGGTGGATCTGGGGTCTGATGCTGTGTTCAACTGTGCCTGGACTGGAAACCCCTCCCTCACAATCGTCTGGATGAAGAGGGGCTCTGGAGTGGTACTAAGCAATGAGAACATCCTGACACTCAAGGCTGTGAGGCAGGAAGATGCTGGGAAATATGTGTGCCGTGCCGTGGTCCCGCGAGTCGGCGCCGGGGAGAAGGAGGTTTCTCTCACCGTCAACGGCCCACCCACCATCTCCAGTACCCAGACACATCAGGCTCTCCACGGGGAGAAGGGGGAGATCAAGTGCTTCATCCGGAGCACTCCACCTCCAGACCGCATTGCCTGGTCATGGAAGGAGACAGTGCTGGAGTCAGGGACGTCTGGCCGTTACACAGTGGAGACGGTCAGCACCGAGGAAGGGGTCATCTCTACTCTGACCATGAGTAACATCGTCCCTGCAGACTTCCAGACCATCTACAACTGCACAGCCTGGAACAGCTTTGGGTCTGACACGGAGATCATCCGCCTCAAGGAACAAGAGACTCTCCCGGTGGCGGTCATCATCGGGGTGGCAGTCGGGGCCTTAGTGGCTTTCATCGTCCTCATGGGAACCATCGGAGCTTTCTGTTGTACCCGCTCTCAAAGAAAGGAAGCGCACCTGGTTATGCCCTCACTACCCGTCTCCATCTGTGCTCACCAGAGAGAGCTTGCAAGCAAAATTAAGACAGAAAATCTAAAAGGGGTGGTGTCAGCCAAGAACGACATCCGAGTAGAGATTGTCCACAAAGACCACAATGCTGCCCGGGAAAACGAGGAGCACACCGCCATGAAGCAACTTATGGTGAGTGTAGAACGTGGGGAGTTCCAGCAGGAGTCAGTGCTGAAGCAGCTAGAGGTGCTGCAAGAGGATGAGAAAGAGTACCAGCATATCAAGGACCCCACCAATGGATACTACAGTGTCAACACCTTCAAGGAGCACCACTCCACCCCCACCATCACCCTGAAAGGTAACCAGACTACAGAGACGCGGAATCCCACCGCTGCCACCACCGGGGGCAAGCAGCGGGTACCCACGGGCATGTCCTTCACCAACATCTACTCCACCCTAGGTGCCGGGCCAAACCGTCTGTACGACTACAGCCAGCGCTTCGTGCTGGGCATGGGCAGCAGCTCCATCGAGCTGTGCGAGAGAGAGTTCCAGAGAGGATCACTCAGCGACTCCAGTTCCTTCATCGACACGCAGTGCGACAGCAGCGTCAGCAGCTACAGCAAGCAGGATGGCTACGTGCAATTTGACAAGGACAGCAAGGCCTCCGCCTCCGCCTCCTCCTCATCCCACTACTCCCAGTCCTCCTCACAGAACTCTGACCTCACACGGCCCCTCCAGAAGCGCATGCAAACCCACGTCTGACCTGACCGTCAGAGAAGGCCTGCCTGTCCTGGGGCATCCAGCCATGGGTTGGGACTATGGGAAACACAGCTTCCTGAGACCGAGAAGGGACCTACGTTTCAAAGCACATGATGTGTTTGTGGGAAGCCTTGAAATAGGTGGCTTTAACTCACATTGGACTTGTTCAGACTTCTCTGTGTTCCAACCAGTGGATCAAGAAGCCTTGCATTCCCCCCACGTCTCCTCCTAAGCTCATCAGAAACCACCTCCTGTTGCCCAGTTTTCCACTAACCCATAAACATACAGTAGCTGCGCCATAGAGAGGTATTTTGCCAACATGGACACAACTCAAGTGTGGAGGTGGTTGCTGAACTGATTTCAGTGGAAATAGGATCCCATATAAGACAGCAAAATAACCAAACACTGAGGCTCGGGACTAGGAGTCTTGGTCTACAGCAAGTTCTCTTTCAAGCAAAGCGAGACCACTCTCTTATGGGTGGCAAAAGTAACCCATCACTTGGTACGTGTAAGCCAATATTCTGCTGCTCTCTTGTTGTTCTAAGCACAACTGTGAATGTGTATTAATGGTCAAAGCTTTTCTTCTCTCTTAtcccctctctacccccagcATCCGCTCACACACACTGTATGTTAAGCTTGTCTGATTCAACTTCATCCCGTGTGTGGGTGGAGTAAAACTCTCCAAATTTGCCCAGACTTGCCAAACAATTAACCGATGCCAGTCTTTTCCCCGGGCTCCCAGCTCTCAGAACTCTGCAGATAAGGAGGCCCGTGATCTCAACCGGAAAGCCTGGGTCGTCTTTTCACAGTTTGCCACTCTGAGATAAAGGAATAATATCAGTGTACATTATGCATATTTTATTCAgcattctttatttttatttggctGTTTGAGTTCACTTGTTTTGAGGTCTCGGGAATAAAGTTGTTCCCCTTTGTTTGGTCTTGCCTTGAGTGGGACTATTTGAAATGCCCAGAGATATTTCAGGAGATAAACTTTTGCATTCAGAAGTTGAACAGGATATGTTCTAATTTGAAGAAGGGGATTGGTTACTCAGTCAACCTGTTGGTACCATGCCAGCTCAAATGGAGGAGAGCATAGCTGCCTGACTATAATGTGTGCCCTACCCATGTAATGTGAAGTCTCTCATACTATATGCTTTAGATCATCAGCCATGTCCACAGGATAGAATGCTGCCTGCGGAACCAAATGTAAACACTGTGTACTGTAAAAGAGCTTCTCATCATCATGTGACTTTCCCAAATACCATGTTAACACTGGAGCTCAGTCAATCCAGACTGTATACCTACTGTGATCTAGCTGCTCATCAATGGAAATGTATAGGAATATAttctgtacatttttatttttatttcctgTATTTTGTTCATTTGGCTACTGTGAGACTACTGTATATACGCTGACTGTTTTAAGTGAGTGTATTGTTCATGCCAGATATGGAATTTCACTTTTTTCACCATTACCATCCTTGACATTTTAGTCGAGAGATAAGggaaagacaaaaacaaacacaatcaCTGATAAATGCAAAAGGACTTGTATGGTAGATCCACAATGCCTCCTCTCTGCTAGCTAGCCTGCTGTGGAGGGCGACATGGTCACATGAAACACAGGGCATGTCAGGTACAGGACAAGTACTTTAACACCAGACAAGACCAACCACGATAATGTTAATCCAGTACAGCACACTATATTGGATGAGATAATCAATGATAATGACgaaaatatacagtacatcattTTGCCACCACgctacatatacatatacatacacaccatACAGTCAGGCCTGCGCTACCATACAGTACAAGACTTATGAGTCCTCCATTGTAGAGGTCTTAAGTAGGGTGGTGCAGAATTACAGTAATTCTCAAGGGCAGTTTTTGGAGTGTCAGTTATTTACAGTATATTACTTGTCTGCAATTCAACCTCGCAATTATACAGTATCATAGGTTACATCATCAGTTAGCCTTCAAAAGCCAGTAAAAGTTGTTTGCCTGTGGGTGGCTTCTAGGTCTGGACAGACAGGCCCTGCTTTCTGACATTAGTTAGTTTATTATTCGATTTTATATCAGAGAAGGGTAAAGTTTTGCCTAATGCCAGGAAAACAACATACTCCAGTTTTACGGCAATACAGTAGACACCGAGTTGTAATGGTGATGTAATTTCCTGTTTTTCAAATCTAAAACTGTCCTTTCGTATCTCATTATTTTGCATGGCTCTTCTTCTGCAGGAATACTTGGCCAATGGAATAGATAAATGTACTAACTAGTCCTTCACTTTTGTTGTCTTGCTGAAAGTTGACAATCCTTTCTAAGAATTAGACTGTACCTTCAACAAATGAGAAAGTTGTTGCTCTAAGCATTTTACATGTGATTATATTCAAGGCATTTCAATGGGCTTTTCTACATGAGTGGTGGTGGTTTGACTCTAATTTTACAAATGGATTGGTGCCCATTGTACGGCTTAAACACAAAAAGGTCTGTGTCAATGCTGATAATTCAGCTTGGCTCTTAGAACACTGTATATAAATTTCCATGCTCTCTGTATATAATTTTGCAGTTACATATTTTCTCAGTCAGTTTTCAGTATATTAGAGCAAAACAAATCCCTATACCATCAATTGTACAGACAGACAATCAATTTTCCATTCCTTTTCTCTCTCAGCATTCATCTCCCACCAAGCTTGTCTTTGCAAACAAGTTGTTTGTGTGAGCAGTTTTTAATCTCTTTGTggcagtctctctcacacagtcacacggTCAAAGCTGTTTGGCCCTTGGGTGTGGCACGCAAACTGTTCATGGAGTGAGATGGGAGCTAGAATGTCCTTAGATAAAAGAAACTCTCTTCCACTTGCTTCCCTTCCCAGATTCAGCCCTGTCTCACTGATGGGTTAGAATAGTACCAACTAACTGGAGCCGTAGTGCAGCAACTCTTTGTTACCAGCAAActggatggattaataaatgaaaTGCTATTCTACCAACCCCCCAACGTCAACTTGCTATAGTGGGAGTCTGTATACAGTATCACCTGTGCCATGCTCATCACATATACCGCTGTGGGAATCAAAGCCCATGTGGGTACACATACACCAGTCTGCATGTTTGACCTGAGGAGGGGTGTTTGTTTGGCACCAGCTGGTGCTGTTTGCCATGTTTTAGAAATATGCCTTGGCCAAACATGAATAAATATGCCCACAATGATAACACAGCATTGCTGCCCTTCCCTGATAAAACACAACATCCATTTCCAGGGTCATCGAGCCAAGGAGGTAAATCCTTTATTTTTCAGTAGTGTTGAAGACCACTGTTTGGTCAACATTTCCCCCATCCCACAAGTCTGTTTcttggggatgggggagaggggggagctaCTGTAGTCTCAGATTGGTGGATAGTTCTCTTTGTAATGATTTCTGTGCCCTGTGGCTATATTGCATCAGTGACTTGTGCTCCGCAGAACATTTTGCTTGGTCTGAGTTAAATAGTAGAACAAAACGTATGAAGAAATATATCATGCCTAACACTGACACTGTCATAATGTAGCTCTGCCTGAAAATTGTGGTTTACAGACACTAACAAGTATATGCTACAAAATCCTCCATTTTCTTTTCTACCAATCAATATCTTGATAGTCTGCTGCAAAAAGATATTGACATGGAAGTTTTAAAAGTCAATATAAATAGTGAATCAtcaatgtatatactgtaatttAAAGAGAAAGTGAACGTTGTACTGGGTAAACCACTATTTTCATGCAGTGGCCCTCTGTATTTAAAACAAATTTGAAAAATatgaaaaaatgtattttacctgTACTGGTCTGTGAATCTATGATGCTTTTGCTCTGTATATTTgggggaaaaaataataataattgtctgAACGTGTCTTGATTTCGCCTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2189166 lncRNA downstream 2413 22459225 ~ 22459853 (-) True G1914246
TU2189163 lncRNA downstream 3335 22458000 ~ 22458931 (-) True G1914243
TU2189144 lncRNA downstream 54641 22407290 ~ 22407625 (-) True G1914226
TU2188879 lncRNA downstream 93223 22368590 ~ 22369043 (-) True G1913971
TU2188877 lncRNA downstream 93908 22368115 ~ 22368358 (-) True G1913969
TU2189344 lncRNA upstream 7959 22684235 ~ 22684459 (-) True G1914423
TU2189365 lncRNA upstream 22955 22699231 ~ 22699439 (-) True G1914444
TU2189373 lncRNA upstream 29349 22705625 ~ 22705904 (-) True G1914452
TU2189381 lncRNA upstream 40295 22716571 ~ 22716772 (-) True G1914460
TU2189386 lncRNA upstream 43453 22719729 ~ 22719959 (-) True G1914465
XM_036961086.1 mRNA downstream 196765 22246578 ~ 22265501 (-) True mxh
XM_021582821.2 mRNA downstream 288467 22081435 ~ 22173799 (-) True LOC110504029
XM_021582822.2 mRNA downstream 364396 22081435 ~ 22097870 (-) False LOC110504029
XM_036961102.1 mRNA downstream 474770 21899621 ~ 21987496 (-) False LOC110504027
XM_021582815.2 mRNA downstream 474771 21899621 ~ 21987495 (-) False LOC110504027
XM_021582830.2 mRNA upstream 322781 22999057 ~ 23036494 (-) False LOC110504033
XM_021582828.2 mRNA upstream 322781 22999057 ~ 23048741 (-) False LOC110504033
XM_021582829.2 mRNA upstream 322781 22999057 ~ 23048741 (-) False LOC110504033
XM_036961173.1 mRNA upstream 322781 22999057 ~ 23048741 (-) True LOC110504033
XM_021582835.2 mRNA upstream 463691 23139967 ~ 23144967 (-) True LOC110504036
TU2188549 other downstream 590117 21871253 ~ 21872149 (-) True G1913663
TU2188551 other downstream 597992 21863588 ~ 21864274 (-) True G1913665
TU2187184 other downstream 1486030 20972679 ~ 20976236 (-) True G1912470
TU2186472 other downstream 2000829 20460668 ~ 20461437 (-) True G1911862
TU2185535 other downstream 2770753 19691066 ~ 19691513 (-) True G1910996
TU2190851 other upstream 1075567 23751843 ~ 23752463 (-) True G1915836
TU2193838 other upstream 3487189 26163465 ~ 26165245 (-) True LOC110504083
TU2193901 other upstream 3534140 26210416 ~ 26211871 (-) True LOC110503381
TU2194781 other upstream 4234508 26910784 ~ 26935725 (-) True LOC110504098
TU2195209 other upstream 4653174 27329450 ~ 27331899 (-) True G1919707

Expression Profile