RNA id: XM_021582835.2


Basic Information

Item Value
RNA id XM_021582835.2
length 1464
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC110504036
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 23139967 ~ 23144967 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgtgtaaacatcaCCTGAAGTGATTCCAATCCCAACAGTACAAGGCTTTATAAAAGCACACACAGCTGTAGCACTGAGACACTACAGTTCAGAGGGCACACCATCAGAgactggctgagagagagagacagagacagaggtgatCCAGGGTGCAACACAGTTTCCACACTCACAGGAAAACTCAGTTTGAGTGAGGAGCTCATCTTCTGTAGTTGGACCATTATCATCCAACGACAGGAGCTAGAAAATGGTGTTTGGTATCCAGAAGCTCATCCAGGACCACCTGGTGGAGCGAAGAATCCGCAGAACTCGGCTGGTGACCAAAGATGGCCGCTGCAACATTGAATTTGGCAACGTCAAATACGGCAACCACTTTGCTTTCCTTGTGGACTTCTGGACGACCTTTGTGGAGTTCCGCTGGCGCTTTGTCCTTTTCTTCTTCATCACCTCCTTCACCCTGAGCTGGTTCATCTTCAGCCTGCTGTGGTTCTGGATTGCCCGGAACAACGGGGATCTGAAGTGGCAGAACCCCTCAAACGATCACACCCCATGTGTGTGGAACGTCGTCGGTCTCACTACAGCCTTCCTTTTCTCCCTGGAGACCCAGACCACCATCGGGTATGGTGTACGCGCCATTACCCCTCACTGTCCTGTTGCTGTAGCCCTTATCATTATCCAGACTCTCATAGGGGCCCTCATACACTGCTTCATATGTGGAGTCATCGTGTCCAAGATATCCCTCCCTAAGAAAAGGGCCAAGACCATCACATTCAGTGAGATGGCTGTCATCTGTCCTAAGAAGGACTTCCTTTGCCTCATGATAAGAGTGGCCAACTTACGCAAGACCCTGATGATCGGGAGCCAAATCTACGGCAAGCTGTTGAGGACAACCGTCAAGCCCGATGGGGAGACAATCATCATGGACCAGGTGAACATTGAGTTCCTGATGGACGCTGGGAAGGACAACCTCTTCTTTGTGTGCCCTCTCACACTCTACCATGTGATTGACAAGGCTAGCCCTTTCTTTGACATGGCAGAGGACACCTTCCGTAAACAGGAGTTTGAGCTGGTGGTATTTCTGGACGGCACAGCCGAGACCACCAGCTCAGCCTGCCAGGTCAGGACTTCCTTCATCCCTCAGGAGATCATGTGGGGTTACAACTTCCTGCCCATCATCTCCCGCAGTAAAGAGGGCAAGTACAGAGTGGACTTCTCCAACTTCTCCAAGGTGGTGGCGGTGACCACTGCACACTGTGCCTACTGCTTCCACAACATAGTAGGACACCACATCTCCTCCATTAATGGAATCGACAACGGTGGATTTGGAGTGATTGGTATCCTAGAATAACTTAATATGACCAAGTTGTGAACTTTTGGAGGAAAAATGtataatatgtacagttgaagtgggaagtttacatacacttaggttggagtcatttaaaatagtttttcaaccag

Function

GO: NA

KEGG:

id description
K04995 KCNJ1, KIR1.1; potassium inwardly-rectifying channel subfamily J member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2190164 lncRNA downstream 9270 23125809 ~ 23130697 (-) True G1915200
TU2190162 lncRNA downstream 10661 23125096 ~ 23129306 (-) True G1915199
TU2190141 lncRNA downstream 42381 23095780 ~ 23097586 (-) True G1915179
TU2190142 lncRNA downstream 43831 23091134 ~ 23096136 (-) False G1915179
TU2190128 lncRNA downstream 65778 23073946 ~ 23074189 (-) True G1915166
TU2190171 lncRNA upstream 57158 23202125 ~ 23202459 (-) True G1915207
TU2190220 lncRNA upstream 74619 23219586 ~ 23219798 (-) True G1915254
TU2190248 lncRNA upstream 150703 23295670 ~ 23295905 (-) True G1915279
TU2190258 lncRNA upstream 163870 23308837 ~ 23309911 (-) True G1915288
TU2190269 lncRNA upstream 166550 23311517 ~ 23312147 (-) True G1915296
XM_021582828.2 mRNA downstream 91226 22999057 ~ 23048741 (-) False LOC110504033
XM_021582829.2 mRNA downstream 91226 22999057 ~ 23048741 (-) False LOC110504033
XM_036961173.1 mRNA downstream 91226 22999057 ~ 23048741 (-) True LOC110504033
XM_021582830.2 mRNA downstream 103473 22999057 ~ 23036494 (-) False LOC110504033
XM_036961435.1 mRNA downstream 463691 22462266 ~ 22676276 (-) False LOC110503369
XM_021582839.2 mRNA upstream 81830 23226797 ~ 23288842 (-) False LOC110504038
XM_021582840.2 mRNA upstream 81830 23226797 ~ 23295086 (-) False LOC110504038
XM_036961429.1 mRNA upstream 81830 23226797 ~ 23295134 (-) False LOC110504038
XM_021582838.2 mRNA upstream 81830 23226797 ~ 23295189 (-) False LOC110504038
XM_021582841.2 mRNA upstream 87292 23232259 ~ 23295189 (-) True LOC110504038
TU2188549 other downstream 1267818 21871253 ~ 21872149 (-) True G1913663
TU2188551 other downstream 1275693 21863588 ~ 21864274 (-) True G1913665
TU2187184 other downstream 2163731 20972679 ~ 20976236 (-) True G1912470
TU2186472 other downstream 2678530 20460668 ~ 20461437 (-) True G1911862
TU2185535 other downstream 3448454 19691066 ~ 19691513 (-) True G1910996
TU2190851 other upstream 606876 23751843 ~ 23752463 (-) True G1915836
TU2193838 other upstream 3018498 26163465 ~ 26165245 (-) True LOC110504083
TU2193901 other upstream 3065449 26210416 ~ 26211871 (-) True LOC110503381
TU2194781 other upstream 3765817 26910784 ~ 26935725 (-) True LOC110504098
TU2195209 other upstream 4184483 27329450 ~ 27331899 (-) True G1919707

Expression Profile