RNA id: LOC110503370


Basic Information

Item Value
RNA id LOC110503370
length 568
RNA type mRNA
GC content 0.55
exon number 4
gene id LOC110503370
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 23281883 ~ 23300679 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTACCGCTCCAGGATTTGTTGGAGCCAGACCTACGACGTGTGTCTGTGCCATAGTCCTATGGACATCGAAGAAGCCATCCGTCTGGATTCTTACCTGGAGAACCCGCCATGTGGCCTGCGCTGTTTCCTGTCGGCAGCGTGATGCCATCGTGGGGGGTGCCATCCCCACTGAACTATGCCAGGCTGTGCAGAGCAGCCATTGCTGGGCCCTTCTCATCACCCCCAACTTCCTGCTGGATGACTGGTGCCAGTACACGATGCACCAGGCACTGTCTGAGGGGCCCATGTCCAACCGGATCATTCCCCTGGTCCTCACCCTGCCTTACTCTCAGTACCCAAAGGAGCTACGCTTTTACTACTACAAGGACCTGAGCAAGAACCCAGAGTGAGGCTACACACAGGTGTACAAGATAGAGCTGAAGTACTTGGAGGACATGGTTGAAAAAGATCCTGATAAAGTTGATTACAACATGGATAGCTGCTCCCCACATGCCACACAGACAGTCATTGTGCTGCCTCTGAGGACCTGTGCCTCCTGCTCAGAGCAGGCATGTGGAGCTGGTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2190220 lncRNA downstream 62085 23219586 ~ 23219798 (-) True G1915254
TU2190171 lncRNA downstream 79424 23202125 ~ 23202459 (-) True G1915207
TU2190164 lncRNA downstream 151186 23125809 ~ 23130697 (-) True G1915200
TU2190162 lncRNA downstream 152577 23125096 ~ 23129306 (-) True G1915199
TU2190141 lncRNA downstream 184297 23095780 ~ 23097586 (-) True G1915179
TU2190258 lncRNA upstream 8158 23308837 ~ 23309911 (-) True G1915288
TU2190269 lncRNA upstream 10838 23311517 ~ 23312147 (-) True G1915296
TU2190273 lncRNA upstream 43335 23344014 ~ 23344741 (-) True G1915300
TU2190275 lncRNA upstream 45255 23345934 ~ 23346391 (-) True G1915302
TU2190276 lncRNA upstream 46066 23346745 ~ 23347071 (-) True G1915303
XM_021582835.2 mRNA downstream 136916 23139967 ~ 23144967 (-) True LOC110504036
XM_021582828.2 mRNA downstream 233142 22999057 ~ 23048741 (-) False LOC110504033
XM_021582829.2 mRNA downstream 233142 22999057 ~ 23048741 (-) False LOC110504033
XM_036961173.1 mRNA downstream 233142 22999057 ~ 23048741 (-) True LOC110504033
XM_021582830.2 mRNA downstream 245389 22999057 ~ 23036494 (-) False LOC110504033
XM_021582843.2 mRNA upstream 29440 23330119 ~ 23341771 (-) False LOC110504040
XM_021582844.2 mRNA upstream 29440 23330119 ~ 23341771 (-) True LOC110504040
XM_021582845.2 mRNA upstream 51433 23352112 ~ 23358074 (-) False LOC110504042
XM_036961553.1 mRNA upstream 51433 23352112 ~ 23358660 (-) True LOC110504042
XM_021582846.2 mRNA upstream 59474 23360153 ~ 23372569 (-) False glb1l2
TU2188549 other downstream 1409734 21871253 ~ 21872149 (-) True G1913663
TU2188551 other downstream 1417609 21863588 ~ 21864274 (-) True G1913665
TU2187184 other downstream 2305647 20972679 ~ 20976236 (-) True G1912470
TU2186472 other downstream 2820446 20460668 ~ 20461437 (-) True G1911862
TU2185535 other downstream 3590370 19691066 ~ 19691513 (-) True G1910996
TU2190851 other upstream 451164 23751843 ~ 23752463 (-) True G1915836
TU2193838 other upstream 2862786 26163465 ~ 26165245 (-) True LOC110504083
TU2193901 other upstream 2909737 26210416 ~ 26211871 (-) True LOC110503381
TU2194781 other upstream 3610105 26910784 ~ 26935725 (-) True LOC110504098
TU2195209 other upstream 4028771 27329450 ~ 27331899 (-) True G1919707

Expression Profile