RNA id: TCONS_00057591


Basic Information

Item Value
RNA id TCONS_00057591
length 540
lncRNA type intronic
GC content 0.49
exon number 2
gene id XLOC_027053
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5424860 ~ 5456948 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCACAGGTCAGCAGTCCAACATCAGTTCCAGCAGGTGTTCAGACAGGAGAGGCGAGAGGAGGATGCAGATGGCATGAAATTATTTTAATGCTCAcacttaaccccacccctaaccacacccctcacagtgacatcactagctcaaTTAGGTGGATTGTGTCTGAGACTGCAAGTCTGacatatgcagtctcagcttgcaaatcTAAGTGTGCATCCAGATAATATCATCTGTGGTAAGAGCGCTGCCCCACGGCTTCAGGGGTTGCTGGTATCGGTCCCAGCCAGAACTCTGCGATATGTGTGaatggtgagtgagtgtgaggcgcgcctgaagaaggggggataccagttcggtctccccctggagcttccggagccgtgtccagcaggggttatactttacagcctgaaagaaataaaatcaactgtaaaaaaaaatacacctcTGACCCTTCCACACCCGcttcggttaccatcatttactttctagaggagtgaccctccacaaagcaaatgatggtaaccgacatgtggaacaga

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057571 lncRNA upstream 814 5420906 ~ 5424158 (+) False XLOC_027052
TCONS_00057570 lncRNA upstream 2014 5420906 ~ 5422958 (+) False XLOC_027052
TCONS_00057589 lncRNA upstream 2014 5421798 ~ 5422958 (+) False XLOC_027052
TCONS_00053331 lncRNA upstream 3502 5420906 ~ 5421470 (+) False XLOC_027052
TCONS_00057569 lncRNA upstream 120300 5302949 ~ 5304672 (+) True XLOC_027046
TCONS_00053335 lncRNA downstream 49998 5506946 ~ 5513391 (+) False XLOC_027055
TCONS_00053339 lncRNA downstream 58083 5515031 ~ 5519419 (+) True XLOC_027055
TCONS_00053341 lncRNA downstream 71746 5528694 ~ 5530359 (+) True XLOC_027056
TCONS_00053345 lncRNA downstream 80989 5537937 ~ 5539842 (+) True XLOC_027058
TCONS_00053347 lncRNA downstream 185766 5642714 ~ 5644808 (+) True XLOC_027059
TCONS_00053328 mRNA upstream 37494 5378338 ~ 5387478 (+) True XLOC_027050
TCONS_00053327 mRNA upstream 56814 5341592 ~ 5368158 (+) True XLOC_027049
TCONS_00053326 mRNA upstream 60140 5341592 ~ 5364832 (+) False XLOC_027049
TCONS_00053324 mRNA upstream 84442 5334439 ~ 5340530 (+) False XLOC_027048
TCONS_00053337 mRNA downstream 50004 5506952 ~ 5522437 (+) False XLOC_027055
TCONS_00053338 mRNA downstream 50110 5507058 ~ 5521500 (+) False XLOC_027055
TCONS_00053340 mRNA downstream 66742 5523690 ~ 5530441 (+) False XLOC_027056
TCONS_00053342 mRNA downstream 74635 5531583 ~ 5533756 (+) False XLOC_027057
TCONS_00053343 mRNA downstream 74641 5531589 ~ 5533803 (+) True XLOC_027057
TCONS_00053330 other upstream 7985 5403115 ~ 5416987 (+) False XLOC_027051
TCONS_00053314 other upstream 151134 5255078 ~ 5273838 (+) True XLOC_027045
TCONS_00053296 other upstream 536468 4834085 ~ 4888504 (+) False XLOC_027034
TCONS_00053293 other upstream 734131 4690726 ~ 4690841 (+) True XLOC_027031
TCONS_00053290 other upstream 1037964 4376498 ~ 4387008 (+) True XLOC_027026
TCONS_00053333 other downstream 9050 5465998 ~ 5478348 (+) False XLOC_027051
TCONS_00053334 other downstream 31333 5488281 ~ 5494298 (+) True XLOC_027051
TCONS_00053336 other downstream 50004 5506952 ~ 5515862 (+) False XLOC_027055
TCONS_00053350 other downstream 321281 5778229 ~ 5784871 (+) True XLOC_027061
TCONS_00053381 other downstream 1457768 6914716 ~ 6914851 (+) True XLOC_027079

Expression Profile

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