RNA id: XM_021582845.2


Basic Information

Item Value
RNA id XM_021582845.2
length 3817
RNA type mRNA
GC content 0.46
exon number 14
gene id LOC110504042
representative False

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 23352112 ~ 23358660 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAAAAACGGGGGGCAAAACACTTGCTGGAGAAGGCAGATTTTGGAAAAAAATTATCTGTCacacttctcctcttcctctctgtttttATTCACGATCCCAGTAGTTGCGGAGCACTGCGTTGTTGACCGTGAATATCCATTTTGCGACATTTGCGTCAACAGTGAGCAATAGCAATCATTGGTCATTTGAAGTTGAAATACGGTGGTTAGTTTCATTGCACAAGCGGGTGGAGTATGGGTTTCTACGCGTTTCTTGTACAGTAGGCTAGTAAATGGTGCATTTGAAATGCCTGTCTATAAATAGCAAGGTTACTAGGATGTGCATTGGATGAACAGCAGCCTAAACCGGAGAGCTATTCGATCAGGATAAAATATTGGTTACTGCTTTTATTTTAGGACTTGCTTCTGTATTTTGACACATTGCCGTCGGTTGGAAATGGAGATTGCCACCGCACTGGGGTGTTTTGTTGGTTTTGCCTTCGGAGGACTAGTATTTGTAGCGTATAAACTTGGTTTACTGTATCAGTTGTTTCATAAGACTGAGACCCAGAGCCCTCGCCATGGtggggagagtgtggcagaggtTCTGCGTGCCCATGGGGTTAAGTTTGTCTTCACCCTGGTGGGGGGGCACATCTCGCCCATCTTGGTGGCCTGCGAGAAGCTGGGCATCCGCATCGTGGACACCAGGCACGAGGCCACTGCCGTCTTTGCAGCTGACGCAGTAGCCAGGCTCTCCGGCACTGTAGGTGTAGCTGCAGTGACTGCTGGCCCAGGCCTGACTAACACAGTCACAGCAGTGAAGAACGCTCAGATGGCCGAGTCTCCACTGCTTCTCTTGGGGGGAGCTGCTGCAACATTACTTCAGGGTAGAGGAGCCCTGCAGGACATTGACCAGATGTCCCTGTTCAAGCCGCTGTGTAAGTTCTGCGCCTCAGTGAGGAGTGTGAAGGACATCGCCATCACTGTGAGGAAGGCCCTGGCCATCGCCCAGTCTGGAACTCCAGGCCCTGTGTTCATAGAGTTCCCCATCGACACACTCTACCCCTTCCACCTGGTGTCCAAAGAGTTCGGAGTGAAAAACCCTCCCAAGGGAATAATGGGAAAAGTTGTCACTTGGTACCTCCACAATCATCTAAAGAACTTGTTTGCTGGGGCCTGGGAAACCAGAGATGTGTCCCCTCTCCCTGTACACATCCCTCAGGCCACAGACAATCAGGTACAAAAGTGTATAGAGCTGGTGAGCAGAGCCAAGAAGCCTGTTatcctactggggagccaggcaacACTACCTCCAACACCTACAGATGACATCAGGGCGGCCCTGGAGTCCCTAGGTATCCCCTGCTTCCTGGGTGGAATGTCCCGTGGCATGCTGGGTAGGAACAGTCCCTTGCACATCAGACAGAACAGGAGTGATGCCCTGAAGGAAGCAGACCTTGTGCTGCTAGCAGGAACTGTATGTGACTTCCGATTAAGCTACGGCAGAGTGCTAAACAGACGCAGCAGGATCATTGCTGTCAACAGAGACAAGACTCAACTTCTGAAGAACTCTGACATGTTTTGGAAGCCCACTGTGGCCATTCAGGGAGATGCAGGCTCCTTCCTACTCCGCCTCTCCAAAGGCCTCAAGGGCCACACATGTCCAGAAGATTGGCCACAGTGTCTCAAAGCAGGAGATGTCACCAAAGAGAAGGCTAATCGGAGGAAGGCTGATGAGAAGACGGACCGCCACCTGAACCCCCTGAGTGTCCTGCACCGCGTGGATGAGTTGATGGCTGACGACAGCATCATAGTGGCGGATGGGGGCGACTTTGTGGGCAGTGCTGCTTACATCATGAGACCAAGGGGCCCACTCCGCTGGCTGGATCCAGGAGCATTTGGAACCCTTGGTGTTGGAGGAGGGTTTGCTCTGGGAGCCAAGCTGTGTCGACCTGAGTCAGAGGTGTGGATCATCTATGGCGATGGATCCCTGGGATACAGTGTTGCAGAATTTGACACCTTTACCAGACACAAGACGCCAGTAATTGCCCTGGTGGGGAACGATGCCTGTTGGAGCCAGATCGCCAGGGAGCAGGTTCCCATCCTGGGCAGCAATGTGGCCTGTGGCCTGGCCTTCACAGATTACCACATAGTTGCCGACGGTTATGGAGGCAAAGGCACCCTCATTGGTCGCGAAGACGAGGACAAGCTGGACGGCATCATAAAAGAGGCCCAGAAGGAGACCAGACAGGGAAGAGCCACACTTCTCAATGTTCTCATAGGGAAGACCAACTTCAGAGATGGCTCCATCTCTGTGTAGAGTAGCTCACAGACTGCAACCCCTGGGGTCCCTGTCTGGACCTGCGGGTCCTAAAACCTTCCCACCTTGCCTAGAAACACATATGTTCACATGCTGTGGAACAGTACAAATGCTTTATTTTTTTCTGGTGAAAGGAAAACAATTCAGGAACTCAATCTTCTCAACCTTTATCAGCCTTTCAAACAGCTGTGAAGAGGAGTTTTGATCATGGACTTTTTGGTTATTTTTGCTGGAGAGAAACAAACTTGACATGTAGGCTTTGCTGCTGTTATTATGTAGTAGGCCAGTACCCTTGCTGTATACACTTAACTAATACCTGTGTATTGACTTCAGATTGCCTATTgatctactgaactctacttcgAAACTGGCTATTTATTTTGAAAAACCAAATAAAGTGAATTTTGGAATGGCACGTCCTTAATAGAGATATTTATGGAAATGAATCATACACTAACCTACAAGTCTCTGCAGAATCTGTAGGGTTAATAACAAGATAATAATACAATTGTAATCATTTAATTTAAATGGTATATAATTGATGATTGTATGGCTTTGATTATTGAACGTGCTGTAAGACTCCACTAATACATCAATCAACAGAATGGATACACAAATACAAGACGCCCTATGAAAGAGGAAGGAATTTAAACGAAGATGTTACCATATTTTACCATTTGGGTATTGATCATTATCTTAAATAAATGATCAAATCTGACTTATTACACTGCTCATTCTATTTCAGGTTGACTTATTTTAAGGAATTCTGCATTATCCTGATTGTGCAAATTGAAGTCCACCTTAAATTTGAGTGTTTTGAGAATATTGGAATATTTTTCTGTTTTGCTTTGAATGTACTATTCATAATGTTTGTCGTTTGTAAGGAGAGGGATTGGTAGATACCTGACCTGAATATGGGTCTGAGAATCTCTTGCACTAGCATATGGTATTTGATTATATAAAATGTCATCTTCTACATAAACACAGTGATACTAGTATGCCTCCTTTGTTTTTCAATGTTGACACAATGCATTTAGTCATCAGTTCTGGAATCCAAACACTGGGATTATAGGAACAGTTATTTTTGTCGTTGCAATAGAGAataatgtaaatgtgtttttttcccctctctatTGAGTGGTGCGTTTGTGACACCAACTACACTGGTTGTCTAATTCTCAGATCCTGACCATTGAATGACTACACTATCCACTCCACTGCCCTCCTTATCCTCTATCATTTACCTTGAACTTTTATCAACTCAGATGTCAAGATTGTGTTGGCTGTAGGCAGAGCTACTGTACATACAGATCTCTATATGTCTCTGGCTATATAGTCACAAACTTGCTCGTCTTACGTTACCATACTACCAAGTCTTGTTAAATGTTCTACTGTATTAATGTTCTATGACTGTTTTGGATAATATGATATTATGGTTTGCTTTTAGATTAGATGTTCAAAGTCTACAAGTGTTCCAATCAGTGTATTACATAATACAATTTGGATCATCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2190285 lncRNA downstream 494 23351306 ~ 23351618 (-) True G1915311
TU2190282 lncRNA downstream 971 23350897 ~ 23351141 (-) True G1915309
TU2190281 lncRNA downstream 1422 23350452 ~ 23350690 (-) True G1915308
TU2190280 lncRNA downstream 2120 23349697 ~ 23349992 (-) True G1915307
TU2190279 lncRNA downstream 2600 23349043 ~ 23349512 (-) True G1915306
TU2190313 lncRNA upstream 44315 23402389 ~ 23402628 (-) True G1915339
TU2190315 lncRNA upstream 44829 23402903 ~ 23403273 (-) True G1915341
TU2190321 lncRNA upstream 49215 23407289 ~ 23407518 (-) True G1915347
TU2190604 lncRNA upstream 233485 23591559 ~ 23591974 (-) True G1915593
TU2190812 lncRNA upstream 365887 23723961 ~ 23724175 (-) True LOC110503372
XM_021582843.2 mRNA downstream 10341 23330119 ~ 23341771 (-) False LOC110504040
XM_021582844.2 mRNA downstream 10341 23330119 ~ 23341771 (-) True LOC110504040
LOC110503370 mRNA downstream 51433 23281883 ~ 23300679 (-) True LOC110503370
XM_021582838.2 mRNA downstream 56923 23226797 ~ 23295189 (-) False LOC110504038
XM_021582841.2 mRNA downstream 56923 23232259 ~ 23295189 (-) True LOC110504038
XM_021582846.2 mRNA upstream 2079 23360153 ~ 23372569 (-) False glb1l2
XM_021582847.2 mRNA upstream 2079 23360153 ~ 23388694 (-) False glb1l2
XM_021582848.2 mRNA upstream 2079 23360153 ~ 23388694 (-) False glb1l2
XR_005039348.1 mRNA upstream 3854 23361928 ~ 23372575 (-) True glb1l2
XM_036962196.1 mRNA upstream 54105 23412179 ~ 23428493 (-) False LOC110504044
TU2188549 other downstream 1479963 21871253 ~ 21872149 (-) True G1913663
TU2188551 other downstream 1487838 21863588 ~ 21864274 (-) True G1913665
TU2187184 other downstream 2375876 20972679 ~ 20976236 (-) True G1912470
TU2186472 other downstream 2890675 20460668 ~ 20461437 (-) True G1911862
TU2185535 other downstream 3660599 19691066 ~ 19691513 (-) True G1910996
TU2190851 other upstream 393769 23751843 ~ 23752463 (-) True G1915836
TU2193838 other upstream 2805391 26163465 ~ 26165245 (-) True LOC110504083
TU2193901 other upstream 2852342 26210416 ~ 26211871 (-) True LOC110503381
TU2194781 other upstream 3552710 26910784 ~ 26935725 (-) True LOC110504098
TU2195209 other upstream 3971376 27329450 ~ 27331899 (-) True G1919707

Expression Profile