RNA id: XM_036962197.1


Basic Information

Item Value
RNA id XM_036962197.1
length 3017
RNA type mRNA
GC content 0.45
exon number 1
gene id LOC118944114
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 23423853 ~ 23426869 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaaaggagacaactcacaaatgtgggaattctggagattttttaaaattctgacaatgagtctgaaagtcaggaatcagattctgacagtgaggagctgccccCCAACCTTGTAGCCATTGAGAAACCTGAATCTGAATTTCCCTTGTCCACTGACGAAGTACCAggtccctttgaagatgctggtggtgatggaggcagaccgacagtggatgaagtacaggagttctgtggtagctggaaggtCACCAGtcatttcacccctcctggccctgctgtttgctttgacgagtcccagtctggagtgcaacgccccttgccatttccaactgaggcagagtgcttcaagttgtttctgacagaggagctggtgggaaACATAGTAGAGGAGACCAATCGCTATTCCTTGGAGCTACAGGAGATGAGAGAGCCAGGAGTGAGGGGGAAACTCGCTAAATGGGTGACAACCACAATTAGcgaaatgtataccttcctggtgacagtcctcctcatggggatagtaaagaagaactctaagagaatactggagcacagatcctatgtttgcaactcccttctttgccaccctcttttcccaagaCCGCTTCCTAGTTCTGCTGCGATGCCTGCATTTCGTCAACAATGCTACTAAGTCACAcgttatacaaaataagaaatgttcTCATCAGCCTGACATCAGCGTTTGGTCGGGTCTTTGTGCCATACAAGGACCTATGCATTGATGAGTCCCTGATGTTATGGAAAGGTAGGCTGGCGTTCTGTCAATATATTTCCTCCAAAAGGCACAGGTTTGGAGTCAAGTTCCTTGTCATGTGCGACGTGAAGACAGGATTTGTCCAGGATATTATAGTTTACACAGGGTCCACCACTGACATCAAACATTATGAGGAGCTTGGGGTGTCCGGGTCCGTGGTGATGACCATGCTGGCTCCTTATCTCGGCAAGGGACACACTTTGTATGTGGACAATTGGTATAGCAGTCCCACACTCTTCCAGCATCTGATCTCCAACAGCACAGGGGCCTGTGGCACAGTCGTGTCGAACAGGAAGGGGATGCTGGCATTCGGATGCAGGAAGAtgcagagaggggaggtggagttcCAGGAGAACggtcaacagctggcagtaaagtggcatgacaaacgagacgtccatgtcctctccactgtccatacagcaaccatgtcggccacagggaaggtggaccacctgacgggagagagaaagatcaaaCCAGATTGTGTGCTTGATtataacctcaaaatgggggccatggataaggcggacatgataaacagctttgtggaatgcactAGGAAAACGACCAAGTGGTATAAGAAGATATTTTTCCATCTGATCGACACTGCTGCCCTCAATGGTCACATAATTCACCGCCAACTAACAGGTGAGATGATTACTGAACAAGGTATTTTTGTAACTGGATGTACAGTTCACATACGCATTATGCAATTATAGTGACAATATCTCACCCACCTACCCACTGCCTCATCATCCTCTAACTTTCCTCATTCTCCCCACTCCCTCATAGGTAAAGTAATTACCTACCAAAAATACAGCGATAACCTCATGAGAGCTGCTGGAGGAGCACCACACTCCTCGGCGCCCAACCACTGGGGGTCGTCCTGCTGTAGACAATCCCCTACGCCTCACTGCACGGCATTTTCCCTGCAAAGTCCCTCAAACTGCTGCTCATGGTAGTTGCACACGGAGGCACTGCAAAGTCTGCCTGTCTGGCGCCAGGAGACGTAAGCAGAGGAAGATGACAAAGATGGCAGTGTTTAGCTTGTGATACACCTCTATGTATTTCACCATGCTTTGAGGAGTATCACATGCTCAAGCATTATTGAGCATATCTGCAGCAAAAAGTGACTGACTGACCTAACAGGTGACCtgccatgatactatgccttTAGAGATGGGGGTGGAAATGCAGTTGTTGTTCAGTCACTGCATGGATATTAAATATGGGTTATGCATATTCCGTTTTTTGTCCTCTAGTAAAACAAGTTGTTGAACCAACTACCAATATTGCAATAAAATAGATGACTATTACATATTGGCATATGTGTTTTCTTGATGTGTTTTCATCCAGTACAACTGTTAAGTTGTACGTTAGCATACGTTAGCATACAAAAGCTGTCATTCTGTACGTTAGCATACAAAAGCTGTCATTCTTCAGCTCCAAAGATGTCCAGCTCTAGTTATGATATTGGCAAATAATGTTTGTGGTTTCTGAAAGTACAGAATAAAGAATAATTATTAATTAGAATACAATATAAGGATATCGCAATACAACAATACTACAAAGAAGTAACATGCTATAAAAAAAATAGTTTATTGCATTGACAAAAATCACAGATTTGAGTTATAACAGTAAGAGGGGCaaggcagggcagaacagagctaTGTTGAATAGACCAAATAAACAAACCATGGTCATATTTTTATCTAGGCAAATCATTTAAGAACAaactattatttacaatgatggcctacaccggccaaactcggACAACGCAGccaggatttgaaccagggtgtctgtagtgactgagatgcagtgccatagaccgctgcgccacttgggagtcataagtacagggtagcttcaaaatacaacacaataGTTCTCTGACGCAactagcattgttttacagagcaAATAGAATAATGTAGCTACGTAAGCACGATTGACTATAATATATAAAGGCTATAAAATGTGTAACGTTACCTCACGTGTCCGCGGTTATAAGACATATATTATGATCCATACATACAGTGAGCTACAGCAGAAACGGCATACGGAAACTATTATAACGTAacaaggcacttactttgatagaaacgctGCCTAAATTTGAACCAgggagtctgtagtgacgcctctagcactgatgcgcggtgcctttgaccgctgcaccacttgggagtcataaggccacacagcttcaaaatacaacacaagataatacttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2190321 lncRNA downstream 16335 23407289 ~ 23407518 (-) True G1915347
TU2190315 lncRNA downstream 20580 23402903 ~ 23403273 (-) True G1915341
TU2190313 lncRNA downstream 21225 23402389 ~ 23402628 (-) True G1915339
TU2190285 lncRNA downstream 72235 23351306 ~ 23351618 (-) True G1915311
TU2190282 lncRNA downstream 72712 23350897 ~ 23351141 (-) True G1915309
TU2190604 lncRNA upstream 164690 23591559 ~ 23591974 (-) True G1915593
TU2190812 lncRNA upstream 297092 23723961 ~ 23724175 (-) True LOC110503372
TU2190818 lncRNA upstream 300738 23727607 ~ 23727920 (-) True G1915803
TU2190822 lncRNA upstream 302710 23729579 ~ 23729860 (-) True LOC110503373
TU2190849 lncRNA upstream 322053 23748922 ~ 23749386 (-) True G1915834
XM_021582847.2 mRNA downstream 35159 23360153 ~ 23388694 (-) False glb1l2
XM_021582848.2 mRNA downstream 35159 23360153 ~ 23388694 (-) False glb1l2
XR_005039348.1 mRNA downstream 51278 23361928 ~ 23372575 (-) True glb1l2
XM_021582846.2 mRNA downstream 51284 23360153 ~ 23372569 (-) False glb1l2
XM_036961553.1 mRNA downstream 65193 23352112 ~ 23358660 (-) True LOC110504042
trnaa-ugc-180 mRNA upstream 157810 23584679 ~ 23584754 (-) True trnaa-ugc-180
LOC110503372 mRNA upstream 294078 23720947 ~ 23724037 (-) False LOC110503372
LOC110503373 mRNA upstream 301850 23728719 ~ 23730247 (-) False LOC110503373
XM_021581726.2 mRNA upstream 304131 23731000 ~ 23735028 (-) True mmp20a
XM_021582855.2 mRNA upstream 387733 23814602 ~ 23820173 (-) False LOC110504045
TU2188549 other downstream 1551704 21871253 ~ 21872149 (-) True G1913663
TU2188551 other downstream 1559579 21863588 ~ 21864274 (-) True G1913665
TU2187184 other downstream 2447617 20972679 ~ 20976236 (-) True G1912470
TU2186472 other downstream 2962416 20460668 ~ 20461437 (-) True G1911862
TU2185535 other downstream 3732340 19691066 ~ 19691513 (-) True G1910996
TU2190851 other upstream 324974 23751843 ~ 23752463 (-) True G1915836
TU2193838 other upstream 2736596 26163465 ~ 26165245 (-) True LOC110504083
TU2193901 other upstream 2783547 26210416 ~ 26211871 (-) True LOC110503381
TU2194781 other upstream 3483915 26910784 ~ 26935725 (-) True LOC110504098
TU2195209 other upstream 3902581 27329450 ~ 27331899 (-) True G1919707

Expression Profile