RNA id: LOC110503376


Basic Information

Item Value
RNA id LOC110503376
length 1395
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC110503376
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 23792880 ~ 23795998 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atggaaatcacaGATTTACTGCTCCTTGTGGTGGTTGCTCAGTCATTTGCTATGCCTCTATCATCACTGGAGGAGACTAAAAAGTGGCTATTAGCCGAGAAATACCTCCGCAGGTTCTACAACCTTCGAGCTGGACTTCAGGGAACAAAGACCGACAGGTCTTCAGACGCCATGCAGGCTAAGATCAGGGAGATGCAGTCCTTCTTCAACCTCCAGGTGACGGGGAGCCTGGACGCTAACACCCAGGAGCTGATGAGCATGGCCAGGTGTGGTGTCCCTGACGTGGGGGAATACAACCACTTCCCCCGACACCTCAAATGGCAGAACACCATTGTGACCTTCAGAGTAGTGAATTATACTCCTGATCTGAAGAAGGCTGATGTGGACAGAGCTATCCGTAACGCCTTCAGCATCTGGGCTGACGTCACTCCTCTGACCTTCAAGAAACTGCATGAGGGGAAGGCTGACATCATGATTTTATTTGGGACCAAAGAACATGGAGACTTCAACCCCTTCGACGGCCCTGACGGTCTCTTAGCCCATGCCTATGCCCCTGGCAGAGACATTGGAGGAGACACACACTTTGATGAAGATGAACATTGGTCAAAAGACTCAGACGCCTACAACCTTTTCCTGGTGGCCACCCATGAGTTTGGCCATTCCCTTGGCTTGTCCCATTCTACTGATCCTGGGGCTCTGATGTACCCAGTCTACTCCTATAGCCAGGGTAACCCACTGTCTGAAGATGATATCACCGGCATTCAAGCTCTTCATGGCCCGAACCCCAGGCACAGGAAAGTGAAGCCGAagccagatgccccaaacaaatGTGACCCCATGTTGAGTTTTGATGCTGTTACTGAGCTCAGAGGAGAAACGATCATCTTCAAAGACAGGTTTTACTAGCGTCTCCATCCCGAGTTTGCAGAGCCTGAGCAAACCCTGATCAAATCCACCTGGCCCTTCCTCCCCAACAAAGTGGATGCTGCCTATGAGTACCCTGAGAAAGACATGGTCTTCATATTCAGTGGTATTAGAATGTGGGCTCTGAATGGCTATAACCTGGTGGAGGGCTACCCCAAATACATCTTTAAACTGGGACTCCCCAAGACCGTGCGGACGGTGGATGCTGCTGTGTACATCCCAGTCACCGGCAAGACACTGTTGTTCTCTGAGGAAGATTACTGGAGTTATAATGAGAAAACTAACACAATGGACAGCGGCTTCGCAAGATCCATTGAGATGGATTTCTCTGGAATGGCAGAGGAGGTGGATGCTGCTGTATATCAATATGGATATTTGCATTTCttccatgaacacacacagttTGAATACAGCTACAGTGCAAGGAAGGTCATTCAGATTGTTAGGACAAACTCCTTTCTCAACTGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2190850 lncRNA upstream 40221 23752326 ~ 23752659 (+) True G1915835
TU2190848 lncRNA upstream 43657 23748926 ~ 23749223 (+) True G1915833
TU2190841 lncRNA upstream 48268 23744402 ~ 23744612 (+) True G1915826
TU2190793 lncRNA upstream 77485 23715164 ~ 23715395 (+) True G1915778
TU2190791 lncRNA upstream 78415 23713939 ~ 23714465 (+) True G1915776
TU2190887 lncRNA downstream 18641 23814639 ~ 23816814 (+) True G1915868
TU2191027 lncRNA downstream 115483 23911481 ~ 23911684 (+) True G1915999
TU2191036 lncRNA downstream 121690 23917688 ~ 23917908 (+) True G1916008
TU2191053 lncRNA downstream 131302 23927300 ~ 23927701 (+) True G1916025
TU2191072 lncRNA downstream 140754 23936752 ~ 23937101 (+) True G1916043
XM_036961089.1 mRNA upstream 26662 23752934 ~ 23766218 (+) True LOC110503375
XR_005039436.1 mRNA upstream 291203 23487167 ~ 23501677 (+) True LOC118944115
LOC110503371 mRNA upstream 397286 23388846 ~ 23395594 (+) True LOC110503371
XM_021582842.2 mRNA upstream 462815 23314403 ~ 23330065 (+) False LOC110504039
XM_036961824.1 mRNA upstream 605614 23152236 ~ 23187266 (+) True LOC110504037
XR_002470550.2 mRNA downstream 59145 23855143 ~ 23888178 (+) True LOC110504048
LOC118944003 mRNA downstream 140319 23936317 ~ 23952562 (+) True LOC118944003
XM_021582866.2 mRNA downstream 857976 24653974 ~ 24670701 (+) True pipox
LOC110503380 mRNA downstream 1313102 25109100 ~ 25111331 (+) False LOC110503380
XM_036962074.1 mRNA downstream 1324740 25120738 ~ 25239451 (+) False LOC110504061
TU2190341 other upstream 366808 23425189 ~ 23426072 (+) True G1915361
TU2187949 other upstream 1598273 22193790 ~ 22194607 (+) True G1913153
TU2187558 other upstream 2131182 21660162 ~ 21661698 (+) False sacs
TU2187319 other upstream 2590431 21201136 ~ 21202449 (+) True G1912565
TU2186058 other upstream 3485488 20304763 ~ 20307392 (+) True G1911474
TU2191158 other downstream 216267 24012265 ~ 24012808 (+) True G1916129
TU2191642 other downstream 722362 24518360 ~ 24519017 (+) True G1916588
TU2191732 other downstream 845700 24641698 ~ 24642134 (+) True G1916660
TU2191909 other downstream 1129136 24925134 ~ 24927054 (+) True G1916811
TU2192259 other downstream 1590321 25386319 ~ 25387517 (+) True G1917109

Expression Profile